NO04G01750, NO04G01750 (gene) Nannochloropsis oceanica

Overview
NameNO04G01750
Unique NameNO04G01750
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length877
Alignment locationchr4:515849..516725 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:515849..516725 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO04G01750 vs. NCBI_GenBank
Match: XP_008870547.1 (hypothetical protein H310_07049 [Aphanomyces invadans] >ETW00412.1 hypothetical protein H310_07049 [Aphanomyces invadans])

HSP 1 Score: 82.4 bits (202), Expect = 6.800e-13
Identity = 43/75 (57.33%), Postives = 52/75 (69.33%), Query Frame = 0 
Query:    4 RALSPASNKEKDPYAKKKEVNYQILMPLIYAPILPLIRIGLRGRIPQRQIDIIFGGAVLTALGHAGYIMASDSSV 79
            R  +P    E  P   K EVNY +  PL+Y P++PLIRIGLRGR+PQ+QID IF  +V  AL HAGY+M SDSSV
Sbjct:    7 REWTPPPQVEAKP---KGEVNYHMYAPLLYGPMIPLIRIGLRGRLPQKQIDAIFLTSVGLALSHAGYVMFSDSSV 78
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BLAST of NO04G01750 vs. NCBI_GenBank
Match: XP_008604084.1 (hypothetical protein SDRG_00389 [Saprolegnia diclina VS20] >EQC42661.1 hypothetical protein SDRG_00389 [Saprolegnia diclina VS20])

HSP 1 Score: 79.3 bits (194), Expect = 5.800e-12
Identity = 38/55 (69.09%), Postives = 43/55 (78.18%), Query Frame = 0 
Query:   24 NYQILMPLIYAPILPLIRIGLRGRIPQRQIDIIFGGAVLTALGHAGYIMASDSSV 79
            NY I  PL Y PI+PLIR+GLRGR+PQR+ID+IF   V  ALGHAG IM SDSSV
Sbjct:   22 NYHIFAPLAYGPIIPLIRLGLRGRLPQRKIDVIFLSTVFFALGHAGSIMFSDSSV 76
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BLAST of NO04G01750 vs. NCBI_GenBank
Match: XP_012213255.1 (hypothetical protein SPRG_18427 [Saprolegnia parasitica CBS 223.65] >KDO16038.1 hypothetical protein SPRG_18427 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 79.0 bits (193), Expect = 7.600e-12
Identity = 36/55 (65.45%), Postives = 45/55 (81.82%), Query Frame = 0 
Query:   24 NYQILMPLIYAPILPLIRIGLRGRIPQRQIDIIFGGAVLTALGHAGYIMASDSSV 79
            N  +  PL+Y P++PL+RIGLRGR+PQ+QID+IF  +V  ALGHAGYIM SDSSV
Sbjct:   23 NLHLFAPLLYGPLIPLLRIGLRGRLPQKQIDVIFLSSVGLALGHAGYIMFSDSSV 77
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BLAST of NO04G01750 vs. NCBI_GenBank
Match: XP_009842048.1 (hypothetical protein H257_15585 [Aphanomyces astaci] >ETV68422.1 hypothetical protein H257_15585 [Aphanomyces astaci])

HSP 1 Score: 78.6 bits (192), Expect = 9.900e-12
Identity = 39/75 (52.00%), Postives = 52/75 (69.33%), Query Frame = 0 
Query:    4 RALSPASNKEKDPYAKKKEVNYQILMPLIYAPILPLIRIGLRGRIPQRQIDIIFGGAVLTALGHAGYIMASDSSV 79
            R  +P    E  P   + E+NY +  PL+Y P++PL+RIGLRGR+PQ+QID IF  +V  AL HAG++M SDSSV
Sbjct:    7 REWTPPPQVEAKP---RGEINYHMYAPLLYGPMIPLLRIGLRGRLPQKQIDAIFLTSVGLALSHAGFVMFSDSSV 78
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BLAST of NO04G01750 vs. NCBI_GenBank
Match: OQS00640.1 (atlastin [Thraustotheca clavata])

HSP 1 Score: 78.6 bits (192), Expect = 9.900e-12
Identity = 37/57 (64.91%), Postives = 45/57 (78.95%), Query Frame = 0 
Query:   22 EVNYQILMPLIYAPILPLIRIGLRGRIPQRQIDIIFGGAVLTALGHAGYIMASDSSV 79
            E N+ +  PL Y P++PLIRIGLRGR+PQ+QID+IF  +V  AL HAGYIM SDSSV
Sbjct:   21 EPNWHMFAPLAYGPLIPLIRIGLRGRLPQKQIDVIFLSSVGIALSHAGYIMFSDSSV 77
[Close]
BLAST of NO04G01750 vs. NCBI_GenBank
Match: OQR83479.1 (hypothetical protein ACHHYP_14652 [Achlya hypogyna])

HSP 1 Score: 77.0 bits (188), Expect = 2.900e-11
Identity = 36/55 (65.45%), Postives = 44/55 (80.00%), Query Frame = 0 
Query:   24 NYQILMPLIYAPILPLIRIGLRGRIPQRQIDIIFGGAVLTALGHAGYIMASDSSV 79
            NY +  PL+Y P++PLIRIGLRGR+PQ+QID +F  +V  AL HAGYIM SDSSV
Sbjct:   23 NYHMFAPLLYGPMIPLIRIGLRGRLPQKQIDAVFLTSVGLALSHAGYIMFSDSSV 77
[Close]
BLAST of NO04G01750 vs. NCBI_GenBank
Match: XP_002503756.1 (predicted protein [Micromonas commoda] >ACO65014.1 predicted protein [Micromonas commoda])

HSP 1 Score: 62.4 bits (150), Expect = 7.300e-7
Identity = 31/61 (50.82%), Postives = 44/61 (72.13%), Query Frame = 0 
Query:   18 AKKKEVNYQILMPLIYAPILPLIRIGLRGRIPQRQIDIIFGGAVLTALGHAGYIMASDSSV 79
            A+K  +  ++++PLIYAP+LPLIRIG       R  + ++G +++ AL HAGYIMASDSSV
Sbjct:   17 ARKASIQRKLMVPLIYAPMLPLIRIGFNHNPTLR--NRLYGASLIAALAHAGYIMASDSSV 75
The following BLAST results are available for this feature:
BLAST of NO04G01750 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 7
Match NameE-valueIdentityDescription
XP_008870547.16.800e-1357.33hypothetical protein H310_07049 [Aphanomyces invad... [more]
XP_008604084.15.800e-1269.09hypothetical protein SDRG_00389 [Saprolegnia dicli... [more]
XP_012213255.17.600e-1265.45hypothetical protein SPRG_18427 [Saprolegnia paras... [more]
XP_009842048.19.900e-1252.00hypothetical protein H257_15585 [Aphanomyces astac... [more]
OQS00640.19.900e-1264.91atlastin [Thraustotheca clavata][more]
OQR83479.12.900e-1165.45hypothetical protein ACHHYP_14652 [Achlya hypogyna... [more]
XP_002503756.17.300e-750.82predicted protein [Micromonas commoda] >ACO65014.1... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL079nonsL079Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR059ncniR059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR109ngnoR109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009636NSK009636Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G01750.1NO04G01750.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G01750.1NO04G01750.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G01750 ID=NO04G01750|Name=NO04G01750|organism=Nannochloropsis oceanica|type=gene|length=877bp
GTTGGCGAAGACGCTCGCCATCACTGTCCGTCTTGCCCACCATCTCTCAC
AAATCTGAGCACAATACGTTTCCACGCACACTCATACCCACGCCCATCCC
AGGAAGACAAAGGCCAAGCACGTCCACGCCCTCATGTACATCCGTGCCCT
TTCCCCAGCGTCTAACAAGGAGAAGGACCCTTACGCCAAGAAAAAGGAGG
TCAATTACCAGATTCTGgtacgttttttgtgggattgtttcgagccacag
agtctcaaaaataatgttggcgtttttctaggcatgattacttaaccttt
tcgaggaactcgccataaacatgcaaagaggctgcacccgagactcaaca
cggaccatcgcgttcctgtatgtctcggcacgtgtatttggttatctccg
ttcgacacattcagaacgaccgctcaatctctacatttcatattacgaca
gATGCCCCTCATTTATGCGCCCATTCTTCCCTTAATCCGCATTGGACTCC
GAGGACGCATACCTCAGAGACAGATCGACATCATTTTTGGGGGGGCCGTC
CTAACGGCATTGGGGCACGCTGGgtaagcaatgatgaaattggttgggga
aggagcaatttgtgcgctgccattgcgttgttgcatctatgttatgagcg
ttaaatgcatgggaattgccgtttcaacttgcttgacctacgatttactc
gagctcgtacatacacacatgcacccacacagGTATATCATGGCCTCAGA
CTCGTCTGTGTAGCGCCTGTCTGGCGTGTTGGAAATGTTAACATGGCAAT
TGAGTGGATTGCACAATTTTGTAGGCTGGCCGTGAGAGGGCGAAAAGAAA
ATGAACATAACTAGTACGTCTGCTCTC
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protein sequence of NO04G01750.1

>NO04G01750.1-protein ID=NO04G01750.1-protein|Name=NO04G01750.1|organism=Nannochloropsis oceanica|type=polypeptide|length=79bp
MYIRALSPASNKEKDPYAKKKEVNYQILMPLIYAPILPLIRIGLRGRIPQ
RQIDIIFGGAVLTALGHAGYIMASDSSV*
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Synonyms
Publications