NO04G01560, NO04G01560 (gene) Nannochloropsis oceanica

Overview
NameNO04G01560
Unique NameNO04G01560
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1233
Alignment locationchr4:474926..476158 -

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Properties
Property NameValue
DescriptionG patch domain containing protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:474926..476158 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR000467G_patch_dom
Homology
BLAST of NO04G01560 vs. NCBI_GenBank
Match: EWM28589.1 (g patch domain containing protein [Nannochloropsis gaditana])

HSP 1 Score: 255.0 bits (650), Expect = 4.000e-64
Identity = 169/366 (46.17%), Postives = 201/366 (54.92%), Query Frame = 0
Query:   65 GHYGPATRHPPQXXXXXXXRLPCPPYVMAGFVRGKARYADEQVDEERQADQPSNRTSTSATTPNDECPSALYAALTARPAEGPEVMVLENDEVEILPTRKRRR--CAQGADPP-----THAADVT------ILFNSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQ-------SIPVFDCVICQERITSTDQATHERSTLHTFNAQKSASIRRIVLPESNRGVQLLARLGWKDDQGLGKNGQGRMQPTKSILKLDRTGLGHTQQLPARVTHFPSHSAEQAARAVDGKSEAQRKVEEIELWARDGRAMAQGRAXXXXXXXXXVTFGEVGRCETARERERRLRKEKETRARIIADLNGE 411
            GHYGP T              P     M  FVRGK RYAD + D +   +  ++R        +D CPS LYA L ARP E P+V +L ++++ ILPTRKRRR  C +    P     T A+ +T      I  N                                       +       +I  FDC++C ER+TSTD+ATHERSTLHTFNA+K  S  RI+LPESNRGVQLLARLGWK+D GLGK+ QG +QP KSILKLDRT LGH    PARVTHFPSH A QAARA DGKS AQRKVEE+E    +GRA A+            V   +  RCETAR R RRL KEKE+ +RI A LN E
Sbjct:   39 GHYGPQTSKYTSFQ-------PHRAIPMISFVRGKTRYADPK-DVDGDFNHDNDRHPAPGPASDDVCPSTLYAELIARPGEEPDVSILNDNDISILPTRKRRRRPCERPQRTPLGSSATAASSLTGDQNDRIEENERPYYKMVHGERKAVEPCVTLISASASSPVIFIVDEDDSEKETSGHATISAFDCLVCGERVTSTDRATHERSTLHTFNAKKRVSCGRIMLPESNRGVQLLARLGWKEDTGLGKHAQGSVQPVKSILKLDRTCLGHQPLPPARVTHFPSHDAGQAARARDGKSRAQRKVEEVERRVHEGRAAAR---------EGFVLSKKGERCETARGRRRRLEKEKESWSRISAALNQE 387          
BLAST of NO04G01560 vs. NCBI_GenBank
Match: CBJ33494.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 115.2 bits (287), Expect = 4.900e-22
Identity = 59/121 (48.76%), Postives = 75/121 (61.98%), Query Frame = 0
Query:  231 FDCVICQERITSTDQATHERSTLHTFNAQKSASIRRIVLPESNRGVQLLARLGWKDDQGLGKNGQGRMQPTKSILKLDRTGLGHTQQLPARVTHFPSHSAEQAARAVDGKSEAQRKVEEIE 352
            F C +C ER+ S  +  H  STLH FN Q     R++ + ESN+G QLLA +GWK D+GLG   QGR+ P ++  K D TGLG   +L  RVTHFPSH   QA  A DGKS+A R  E ++
Sbjct:  105 FFCRVCGERVASLSEEKHNTSTLHIFNQQHRPQGRKVQIHESNKGFQLLAGMGWKLDEGLGSRKQGRVNPLQTTFKRDTTGLGAGGKLRPRVTHFPSHVPSQALNAPDGKSDAVRAHERLD 225          
BLAST of NO04G01560 vs. NCBI_GenBank
Match: ETP24437.1 (hypothetical protein F441_02570 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 109.0 bits (271), Expect = 3.500e-20
Identity = 51/122 (41.80%), Postives = 76/122 (62.30%), Query Frame = 0
Query:  230 VFDCVICQERITSTDQATHERSTLHTFNAQKSASIRRIVLPESNRGVQLLARLGWKDDQGLGKNGQGRMQPTKSILKLDRTGLG-HTQQLPARVTHFPSHSAEQAARAVDGKSEAQRKVEEI 351
            ++ C  C   +  +  A H+++T H  ++ K  S+R++ LPE+NRG QLL  +GW+D+ GLG  G G++ P  +  K DR G+G       AR+THFPSH  +QA  AVDG+SEAQR  + +
Sbjct:    1 MYFCAACNVYVKDSSVAEHDQTTAHLLSSSKGVSVRKVWLPETNRGYQLLKSMGWQDNGGLGPTGDGKVMPIATTFKTDRAGVGVQPTAKQARITHFPSHDEQQARMAVDGRSEAQRMQDRL 122          
BLAST of NO04G01560 vs. NCBI_GenBank
Match: XP_008899855.1 (hypothetical protein PPTG_07430 [Phytophthora parasitica INRA-310] >ETI54603.1 hypothetical protein F443_02612 [Phytophthora parasitica P1569] >ETK94463.1 hypothetical protein L915_02495 [Phytophthora parasitica] >ETL47840.1 hypothetical protein L916_02466 [Phytophthora parasitica] >ETM00950.1 hypothetical protein L917_02395 [Phytophthora parasitica] >ETN15279.1 hypothetical protein PPTG_07430 [Phytophthora parasitica INRA-310] >ETO83357.1 hypothetical protein F444_02612 [Phytophthora parasitica P1976] >ETP52391.1 hypothetical protein F442_02588 [Phytophthora parasitica P10297] >KUF89037.1 hypothetical protein AM588_10002125 [Phytophthora nicotianae])

HSP 1 Score: 107.8 bits (268), Expect = 7.900e-20
Identity = 50/122 (40.98%), Postives = 76/122 (62.30%), Query Frame = 0
Query:  230 VFDCVICQERITSTDQATHERSTLHTFNAQKSASIRRIVLPESNRGVQLLARLGWKDDQGLGKNGQGRMQPTKSILKLDRTGLG-HTQQLPARVTHFPSHSAEQAARAVDGKSEAQRKVEEI 351
            ++ C  C   +  +  A H+++T H  ++ K  S+R++ LPE+NRG QLL  +GW+D+ GLG  G G++ P  +  K DR G+G       AR+THFP+H  +QA  AVDG+SEAQR  + +
Sbjct:    1 MYFCAACNVYVKDSSVAEHDQTTAHLLSSSKGVSVRKVWLPETNRGYQLLKSMGWQDNGGLGPTGDGKVMPIATTFKTDRAGVGVQPTAKQARITHFPAHDEQQARMAVDGRSEAQRMQDRL 122          
BLAST of NO04G01560 vs. NCBI_GenBank
Match: KUF80071.1 (G patch domain and ankyrin repeat-containing protein 1 [Phytophthora nicotianae])

HSP 1 Score: 107.8 bits (268), Expect = 7.900e-20
Identity = 50/122 (40.98%), Postives = 76/122 (62.30%), Query Frame = 0
Query:  230 VFDCVICQERITSTDQATHERSTLHTFNAQKSASIRRIVLPESNRGVQLLARLGWKDDQGLGKNGQGRMQPTKSILKLDRTGLG-HTQQLPARVTHFPSHSAEQAARAVDGKSEAQRKVEEI 351
            ++ C  C   +  +  A H+++T H  ++ K  S+R++ LPE+NRG QLL  +GW+D+ GLG  G G++ P  +  K DR G+G       AR+THFP+H  +QA  AVDG+SEAQR  + +
Sbjct:  450 MYFCAACNVYVKDSSVAEHDQTTAHLLSSSKGVSVRKVWLPETNRGYQLLKSMGWQDNGGLGPTGDGKVMPIATTFKTDRAGVGVQPTAKQARITHFPAHDEQQARMAVDGRSEAQRMQDRL 571          
BLAST of NO04G01560 vs. NCBI_GenBank
Match: KUF96727.1 (G patch domain and ankyrin repeat-containing protein 1 [Phytophthora nicotianae])

HSP 1 Score: 107.8 bits (268), Expect = 7.900e-20
Identity = 50/122 (40.98%), Postives = 76/122 (62.30%), Query Frame = 0
Query:  230 VFDCVICQERITSTDQATHERSTLHTFNAQKSASIRRIVLPESNRGVQLLARLGWKDDQGLGKNGQGRMQPTKSILKLDRTGLG-HTQQLPARVTHFPSHSAEQAARAVDGKSEAQRKVEEI 351
            ++ C  C   +  +  A H+++T H  ++ K  S+R++ LPE+NRG QLL  +GW+D+ GLG  G G++ P  +  K DR G+G       AR+THFP+H  +QA  AVDG+SEAQR  + +
Sbjct:  450 MYFCAACNVYVKDSSVAEHDQTTAHLLSSSKGVSVRKVWLPETNRGYQLLKSMGWQDNGGLGPTGDGKVMPIATTFKTDRAGVGVQPTAKQARITHFPAHDEQQARMAVDGRSEAQRMQDRL 571          
BLAST of NO04G01560 vs. NCBI_GenBank
Match: ETM54125.1 (hypothetical protein L914_02489, partial [Phytophthora parasitica])

HSP 1 Score: 107.5 bits (267), Expect = 1.000e-19
Identity = 50/122 (40.98%), Postives = 76/122 (62.30%), Query Frame = 0
Query:  230 VFDCVICQERITSTDQATHERSTLHTFNAQKSASIRRIVLPESNRGVQLLARLGWKDDQGLGKNGQGRMQPTKSILKLDRTGLG-HTQQLPARVTHFPSHSAEQAARAVDGKSEAQRKVEEI 351
            ++ C  C   +  +  A H+++T H  ++ K  S+R++ LPE+NRG QLL  +GW+D+ GLG  G G++ P  +  K DR G+G       AR+THFP+H  +QA  AVDG+SEAQR  + +
Sbjct:    1 MYFCASCNVYVKDSSVAEHDQTTAHLLSSSKGVSVRKVWLPETNRGYQLLKSMGWQDNGGLGPTGDGKVMPIATTFKTDRAGVGVQPTAKQARITHFPAHDEQQARMAVDGRSEAQRMQDRL 122          
BLAST of NO04G01560 vs. NCBI_GenBank
Match: XP_002997103.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >EEY69691.1 conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 107.1 bits (266), Expect = 1.300e-19
Identity = 50/124 (40.32%), Postives = 78/124 (62.90%), Query Frame = 0
Query:  230 VFDCVICQERITSTDQATHERSTLHTFNAQKSASIRRIVLPESNRGVQLLARLGWKDDQGLGKNGQGRMQPTKSILKLDRTGLG-HTQQLPARVTHFPSHSAEQAARAVDGKSEAQRKVEEIEL 353
            ++ C  C   +  +  A H+++T H  ++ K  S+R++ LPE+NRG Q+L  +GW+++ GLG  G G++ P  +I K DR G+G  +    ARVTHFP+H  +QA  A DG+SEAQR  + + L
Sbjct:    1 MYFCAACNVYVKDSCVAEHDQTTAHLLSSSKGVSVRKVWLPETNRGYQMLKSMGWQENGGLGPTGDGKVTPIATIFKTDRAGVGVQSTAKQARVTHFPAHDEQQATMAADGRSEAQRTQDRLAL 124          
BLAST of NO04G01560 vs. NCBI_GenBank
Match: GAY02519.1 (replication factor C subunit 3 [Pythium insidiosum])

HSP 1 Score: 104.4 bits (259), Expect = 8.700e-19
Identity = 51/110 (46.36%), Postives = 69/110 (62.73%), Query Frame = 0
Query:  236 CQERITSTDQATHERSTLHTFNAQKSASIRRIVLPESNRGVQLLARLGWKDDQGLGKNGQGRMQPTKSILKLDRTGLGHTQQLPARVTHFPSHSAEQAARAVDGKSEAQR 346
            C   +  T    H++S  HT ++ ++ S++++ LPESNRG QLL  +GW+ D GLG+   GRM+P  ++LK DR GLG     P RVTHFP H  +Q   A DG SEAQR
Sbjct:  602 CNLYVHDTTVEDHDQSLAHTLSSTRAPSLKKVWLPESNRGYQLLLNMGWQQDSGLGRRNDGRMEPIATVLKTDRAGLGMPGPTP-RVTHFPPHDEQQQRAASDGLSEAQR 710          
BLAST of NO04G01560 vs. NCBI_GenBank
Match: POM79883.1 (G patch domain containing protein [Phytophthora palmivora var. palmivora])

HSP 1 Score: 104.4 bits (259), Expect = 8.700e-19
Identity = 52/134 (38.81%), Postives = 80/134 (59.70%), Query Frame = 0
Query:  230 VFDCVICQERITSTDQATHERSTLHTFNAQKSASIRRIVLPESNRGVQLLARLGWKDDQGLGKNGQGRMQPTKSILKLDRTGLG-HTQQLPARVTHFPSHSAEQAARAVDGKSEAQRKVEEIELWARDGRAMAQ 363
            ++ C  C   +  +  A H+++T H  ++ K  S+R++ LPE+NRG Q+L  +GW++  GLG +G G++ P  +  K DR G+G  T     RVTHFP+H  +QA  A DG+SEAQR  + +   AR  +A  Q
Sbjct:    1 MYFCAACNVYVKDSSVAEHDQTTAHLLSSSKGVSVRKVWLPETNRGYQMLKSMGWQETGGLGPSGDGKVTPIATTFKTDRAGVGIQTTTKQTRVTHFPAHDEQQARMAADGRSEAQRMQDRL---ARKRKASQQ 131          
The following BLAST results are available for this feature:
BLAST of NO04G01560 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM28589.14.000e-6446.17g patch domain containing protein [Nannochloropsis... [more]
CBJ33494.14.900e-2248.76conserved unknown protein [Ectocarpus siliculosus][more]
ETP24437.13.500e-2041.80hypothetical protein F441_02570 [Phytophthora para... [more]
XP_008899855.17.900e-2040.98hypothetical protein PPTG_07430 [Phytophthora para... [more]
KUF80071.17.900e-2040.98G patch domain and ankyrin repeat-containing prote... [more]
KUF96727.17.900e-2040.98G patch domain and ankyrin repeat-containing prote... [more]
ETM54125.11.000e-1940.98hypothetical protein L914_02489, partial [Phytopht... [more]
XP_002997103.11.300e-1940.32conserved hypothetical protein [Phytophthora infes... [more]
GAY02519.18.700e-1946.36replication factor C subunit 3 [Pythium insidiosum... [more]
POM79883.18.700e-1938.81G patch domain containing protein [Phytophthora pa... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL079nonsL079Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR059ncniR059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR109ngnoR109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009656NSK009656Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G01560.1NO04G01560.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578479gene_1942Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100009g40gene2025Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G01560.1NO04G01560.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G01560 ID=NO04G01560|Name=NO04G01560|organism=Nannochloropsis oceanica|type=gene|length=1233bp
ATGAATGACACGCAGACCCGGCGATGGAGGCCCGAGGAATTGGAGTCGGA
GGGGGAAGAAGGAGAGGATGCCGCTGTCTACGAAGAGGAAGAGGAGGAGG
GGGAGGAGGAGGAGGGGGAGGAGGAGGAGGGGGAGGGGGAGGGCACGCCG
ACGCATCAGCCCCAGTATTATCACGCAGCATTTGGAGAGCCAGGGCACTA
CGGACCCGCAACACGACATCCACCGCAGCCACCGCCGCCGGCTGTGCCAC
GGCTTCCTTGCCCGCCCTATGTCATGGCGGGCTTCGTGCGGGGCAAGGCC
CGGTATGCCGATGAGCAAGTTGACGAGGAGAGGCAAGCCGATCAACCTTC
CAACCGCACAAGCACTTCTGCTACAACACCCAACGACGAGTGTCCCTCCG
CCTTGTATGCCGCACTGACAGCACGCCCTGCAGAAGGACCAGAAGTGATG
GTCCTGGAGAATGACGAGGTTGAGATTCTTCCCACGCGAAAGCGGCGACG
TTGTGCACAAGGTGCAGACCCCCCAACTCATGCTGCCGATGTCACTATTC
TCTTTAACAGCGACGAGGACGATGGTGATGGTGGTGATCTGACAGCCTCT
GCACCAGCCCAAGCCGCCGCAACAGCTGTTAGCAATACCAACGCTGACGT
TGTCGTTCTCCTCGACGACGACGACCAGTCGATCCCCGTGTTCGACTGCG
TCATTTGTCAGGAACGCATCACATCTACGGACCAGGCCACGCATGAACGA
AGTACCCTGCACACATTCAATGCACAAAAATCCGCGTCCATTCGTCGCAT
CGTGCTCCCCGAAAGCAACCGTGGCGTCCAGCTGCTCGCCCGCCTCGGGT
GGAAGGATGACCAAGGCCTCGGTAAAAACGGCCAGGGACGAATGCAACCC
ACAAAGTCCATCTTGAAGCTCGATCGGACGGGCTTGGGGCACACGCAGCA
GCTCCCGGCGCGGGTGACTCATTTCCCTTCCCACAGTGCCGAGCAGGCGG
CAAGGGCAGTGGATGGCAAAAGCGAGGCTCAGCGCAAAGTGGAGGAGATC
GAGCTTTGGGCGCGAGATGGACGAGCGATGGCACAAGGAAGGGCAGGAAA
ACAGGGAGAACGGGGGCGAAGCGTTACGTTTGGGGAGGTTGGGCGATGTG
AGACGGCAAGGGAGAGGGAGCGACGGTTGAGGAAGGAGAAGGAAACGAGG
GCTCGGATTATCGCGGACTTGAACGGGGAGTGA
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protein sequence of NO04G01560.1

>NO04G01560.1-protein ID=NO04G01560.1-protein|Name=NO04G01560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=411bp
MNDTQTRRWRPEELESEGEEGEDAAVYEEEEEEGEEEEGEEEEGEGEGTP
THQPQYYHAAFGEPGHYGPATRHPPQPPPPAVPRLPCPPYVMAGFVRGKA
RYADEQVDEERQADQPSNRTSTSATTPNDECPSALYAALTARPAEGPEVM
VLENDEVEILPTRKRRRCAQGADPPTHAADVTILFNSDEDDGDGGDLTAS
APAQAAATAVSNTNADVVVLLDDDDQSIPVFDCVICQERITSTDQATHER
STLHTFNAQKSASIRRIVLPESNRGVQLLARLGWKDDQGLGKNGQGRMQP
TKSILKLDRTGLGHTQQLPARVTHFPSHSAEQAARAVDGKSEAQRKVEEI
ELWARDGRAMAQGRAGKQGERGRSVTFGEVGRCETARERERRLRKEKETR
ARIIADLNGE*
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Synonyms
Publications