NO04G01440, NO04G01440 (gene) Nannochloropsis oceanica

Overview
NameNO04G01440
Unique NameNO04G01440
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length931
Alignment locationchr4:449845..450775 -

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Properties
Property NameValue
DescriptionHistone-like transcription factor family protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:449845..450775 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046982protein heterodimerization activity
GO:0003700DNA-binding transcription factor activity
GO:0005515protein binding
GO:0003700DNA-binding transcription factor activity
GO:0003677DNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0016602CCAAT-binding factor complex
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO:0009058biosynthetic process
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR009072Histone-fold
IPR027170NFYC/HAP5_su
IPR003958CBFA_NFYB_domain
Homology
BLAST of NO04G01440 vs. NCBI_GenBank
Match: EWM28620.1 (histone-like transcription factor family protein [Nannochloropsis gaditana])

HSP 1 Score: 174.5 bits (441), Expect = 2.900e-40
Identity = 88/110 (80.00%), Postives = 101/110 (91.82%), Query Frame = 0
Query:   64 APIPSKKPRNAPAPPISATSEYVTEETTFLIPKASIKRIMKLDPDSKQLSQDAIMLMAKATELFVDKLAKASHAMAVSNKRKTIKYEDIADARLSVKSLEFLDGVVPQIP 174
            AP+ SKK RNAP PP+S ++ YVTE+TT  IP+ASIKRIMKLDPD+KQLSQDAIM+MAKATELF+DKLAKASH+MAV+NKRKTIKYEDIADAR S K++EFLDGVVPQIP
Sbjct:   90 APVSSKKARNAPIPPLSTSNAYVTEDTTLAIPRASIKRIMKLDPDTKQLSQDAIMVMAKATELFIDKLAKASHSMAVTNKRKTIKYEDIADARFSQKNMEFLDGVVPQIP 199          
BLAST of NO04G01440 vs. NCBI_GenBank
Match: XP_009036970.1 (hypothetical protein AURANDRAFT_17325, partial [Aureococcus anophagefferens] >EGB08239.1 hypothetical protein AURANDRAFT_17325, partial [Aureococcus anophagefferens])

HSP 1 Score: 84.0 bits (206), Expect = 5.200e-13
Identity = 41/80 (51.25%), Postives = 58/80 (72.50%), Query Frame = 0
Query:   91 TFLIPKASIKRIMKLDPDSKQLSQDAIMLMAKATELFVDKLAKASHAMAVSNKRKTIKYEDIADARLSVKSLEFLDGVVP 171
            + LIPKA++KRIMKLDP+  Q++ DA++L+AKATE+F++K +  + A A    R T+KYEDIAD     K+ EFL  V+P
Sbjct:    1 SLLIPKAAVKRIMKLDPEVNQVANDAVILVAKATEMFLEKFSAEARAQATLRSRTTVKYEDIADTVSGDKNYEFLATVIP 80          
BLAST of NO04G01440 vs. NCBI_GenBank
Match: CDJ96319.1 (Transcription factor CBF NF-Y archaeal histone domain containing protein [Haemonchus contortus])

HSP 1 Score: 73.2 bits (178), Expect = 9.100e-10
Identity = 43/101 (42.57%), Postives = 59/101 (58.42%), Query Frame = 0
Query:   73 NAPAPPISATSEYVTEETTFLIPKASIKRIMKLDPDSKQLSQDAIMLMAKATELFVDKLAKASHAMAVSNKRKTIKYEDIADARLSVKSLEFLDGVVPQIP 174
            ++ A  IS     V E     +P + +K+I +LDPD   +  DA++ + KATELFV +LAKAS+  AV  KRKTI+ +DI  A  S    EFLDG +   P
Sbjct:    2 SSEADTISQEHVQVAELLNCTLPTSRVKKICRLDPDLSMIGSDAVLFITKATELFVAELAKASYTQAVLEKRKTIQTKDIDRAIASKAIYEFLDGALTDWP 102          
BLAST of NO04G01440 vs. NCBI_GenBank
Match: XP_017466633.1 (PREDICTED: DNA polymerase epsilon subunit 4 [Rhagoletis zephyria])

HSP 1 Score: 72.8 bits (177), Expect = 1.200e-9
Identity = 37/92 (40.22%), Postives = 57/92 (61.96%), Query Frame = 0
Query:   78 PISATSEYVTEETTFLIPKASIKRIMKLDPDSKQLSQDAIMLMAKATELFVDKLAKASHAMAVSNKRKTIKYEDIADARLSVKSLEFLDGVV 170
            PI+ T   V E+  F +P+  IK +MKLDPD    S +A+ ++ +ATELF++ LA  + +    +K+KT++  D+  A  SV SL FLDG +
Sbjct:   56 PIATTENDVPEQRLFQLPQTRIKNLMKLDPDMNLASAEAVFVVTRATELFIESLASEAFSYTTQSKKKTVQKRDVDLAISSVDSLMFLDGAM 147          
BLAST of NO04G01440 vs. NCBI_GenBank
Match: XP_014281795.1 (DNA polymerase epsilon subunit C-like [Halyomorpha halys])

HSP 1 Score: 72.4 bits (176), Expect = 1.600e-9
Identity = 42/104 (40.38%), Postives = 62/104 (59.62%), Query Frame = 0
Query:   66 IPSKKPRNAPAPPISATSEYVTEETTFLIPKASIKRIMKLDPDSKQLSQDAIMLMAKATELFVDKLAKASHAMAVSNKRKTIKYEDIADARLSVKSLEFLDGVV 170
            IP KKP   P    S+  E  T      +P A +K+I+K+DPD      DA+ L+AKATELF++ L+K ++A   S K+KTI+ +D+  A  +  +L FLDG +
Sbjct:   65 IPDKKPALLP-DKTSSKKEETTRYRPLHLPLARVKQIIKMDPDVHMAGSDAVFLIAKATELFIELLSKDAYAFTSSAKKKTIQKKDVDSAITNADALVFLDGAL 167          
BLAST of NO04G01440 vs. NCBI_GenBank
Match: XP_644985.1 (hypothetical protein DDB_G0272740 [Dictyostelium discoideum AX4] >EAL71007.1 hypothetical protein DDB_G0272740 [Dictyostelium discoideum AX4])

HSP 1 Score: 70.1 bits (170), Expect = 7.700e-9
Identity = 36/78 (46.15%), Postives = 54/78 (69.23%), Query Frame = 0
Query:   94 IPKASIKRIMKLDPDSKQLSQDAIMLMAKATELFVDKLAKASHAMAVSNKRKTIKYEDIADARLSVKSLEFLDGVVPQ 172
            +P A IKRIM+ D D K +S DA+ML+AK+TE+F+D L K   A   S K+KT++Y+D+A     V +L+FL  ++P+
Sbjct:   79 LPVARIKRIMRCDKDVKIISSDAVMLVAKSTEMFLDYLVK--EAYKSSGKKKTLQYKDLASTIKGVDNLDFLSEIIPE 154          
BLAST of NO04G01440 vs. NCBI_GenBank
Match: KIH50123.1 (hypothetical protein ANCDUO_19802 [Ancylostoma duodenale])

HSP 1 Score: 69.7 bits (169), Expect = 1.000e-8
Identity = 36/80 (45.00%), Postives = 51/80 (63.75%), Query Frame = 0
Query:   94 IPKASIKRIMKLDPDSKQLSQDAIMLMAKATELFVDKLAKASHAMAVSNKRKTIKYEDIADARLSVKSLEFLDGVVPQIP 174
            +P + +K+I +LDPD   +  DA++ + KATELF+ +LAKAS+  AV  KRKTI+ +DI  A  S    EFLD  +   P
Sbjct:   21 LPTSRVKKICRLDPDLTMIGSDAVLFVTKATELFLTELAKASYTQAVLEKRKTIQAKDIEKAIASKHMFEFLDDALNDWP 100          
BLAST of NO04G01440 vs. NCBI_GenBank
Match: KYR01087.1 (putative histone-like transcription factor [Tieghemostelium lacteum])

HSP 1 Score: 69.7 bits (169), Expect = 1.000e-8
Identity = 36/82 (43.90%), Postives = 51/82 (62.20%), Query Frame = 0
Query:   90 TTFLIPKASIKRIMKLDPDSKQLSQDAIMLMAKATELFVDKLAKASHAMAVSNKRKTIKYEDIADARLSVKSLEFLDGVVPQ 172
            T   +P A +KRIMK D D K +SQDA  L+ K+TELF++ L K +    V+ KRKT+ Y+DI+        LEFL  ++P+
Sbjct:   75 TVTQLPIARVKRIMKSDKDVKLISQDATFLVTKSTELFLEYLVKEAFKKTVAEKRKTLSYKDISTTVKDTDPLEFLADIIPE 156          
BLAST of NO04G01440 vs. NCBI_GenBank
Match: PTY14204.1 (hypothetical protein OFAS_OFAS004733 [Oncopeltus fasciatus])

HSP 1 Score: 69.7 bits (169), Expect = 1.000e-8
Identity = 36/92 (39.13%), Postives = 59/92 (64.13%), Query Frame = 0
Query:   78 PISATSEYVTEETTFLIPKASIKRIMKLDPDSKQLSQDAIMLMAKATELFVDKLAKASHAMAVSNKRKTIKYEDIADARLSVKSLEFLDGVV 170
            P  +  E  +      +P A IK+I+K+DPD      DA+ L+AKATE+F++ L+K ++A+  S+K+KTI+ +D+  A L+  +L FLDG +
Sbjct:   71 PKKSKKEETSRYRPLNLPLARIKQIIKMDPDVNLAGSDAVFLIAKATEMFIELLSKDAYAITASSKKKTIQKKDVDTAILNTDALIFLDGAM 162          
BLAST of NO04G01440 vs. NCBI_GenBank
Match: EYC29042.1 (hypothetical protein Y032_0007g3556 [Ancylostoma ceylanicum])

HSP 1 Score: 69.3 bits (168), Expect = 1.300e-8
Identity = 35/80 (43.75%), Postives = 51/80 (63.75%), Query Frame = 0
Query:   94 IPKASIKRIMKLDPDSKQLSQDAIMLMAKATELFVDKLAKASHAMAVSNKRKTIKYEDIADARLSVKSLEFLDGVVPQIP 174
            +P + +K+I +LDPD   +  DA++ + KATELF+ +LAKAS+  AV  KRKTI+ +D+  A  S    EFLD  +   P
Sbjct:   21 LPTSRVKKICRLDPDLTMIGSDAVLFVTKATELFLTELAKASYTQAVLEKRKTIQTKDVEKAIASKHMFEFLDDALNDWP 100          
The following BLAST results are available for this feature:
BLAST of NO04G01440 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM28620.12.900e-4080.00histone-like transcription factor family protein [... [more]
XP_009036970.15.200e-1351.25hypothetical protein AURANDRAFT_17325, partial [Au... [more]
CDJ96319.19.100e-1042.57Transcription factor CBF NF-Y archaeal histone dom... [more]
XP_017466633.11.200e-940.22PREDICTED: DNA polymerase epsilon subunit 4 [Rhago... [more]
XP_014281795.11.600e-940.38DNA polymerase epsilon subunit C-like [Halyomorpha... [more]
XP_644985.17.700e-946.15hypothetical protein DDB_G0272740 [Dictyostelium d... [more]
KIH50123.11.000e-845.00hypothetical protein ANCDUO_19802 [Ancylostoma duo... [more]
KYR01087.11.000e-843.90putative histone-like transcription factor [Tieghe... [more]
PTY14204.11.000e-839.13hypothetical protein OFAS_OFAS004733 [Oncopeltus f... [more]
EYC29042.11.300e-843.75hypothetical protein Y032_0007g3556 [Ancylostoma c... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL079nonsL079Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR059ncniR059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR109ngnoR109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009670NSK009670Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G01440.1NO04G01440.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578445gene_1931Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100009g27gene2038Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G01440.1NO04G01440.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G01440 ID=NO04G01440|Name=NO04G01440|organism=Nannochloropsis oceanica|type=gene|length=931bp
GAGGGGAGGGTGGGGGAGGTCGATGGGAAAAGTGGAAATGCGTGGAAGCC
TTCCGTGGCAAAACCATGGCCACTGCTTACTCAAACACGACGTAATGTTG
ATCTTTAAGTGGTGCTTGTCGTGTGGCAGGATAAAAACGTAAAAAAGAGG
TTACAAGGGCCACCACGTCGAGCACCTTCTTGCCTACTTGTCGCTTTTCA
CTGAGGTCCGATGCGCGGTGACGGTTTTCCACAATACCCCTGTCCCTAGC
CTTCCACACACTCATTACAAAGCCTCCCAAACCACAACACCACGACAGCA
GGACCACCATGTCCTCTTCGACGCCCACCGAAGAGGAAGTGCCGTCGGCC
CCCGCAGAGACCGCGCCGGCGCAACTACCCGCGCCAGACCCTCCTGCAGC
GACAACAGACGCAGTGCCCGACGCTGCTATTGAGGACACCAAGCGCCCCG
CAGCAGAGGCAATGACAGAGGGAGAGGGAGCAGTGGCATCAGTGGCAGCG
CCCATACCAAGTAAAAAGCCTCGGAACGCTCCTGCCCCGCCAATCTCCGC
GACTTCAGAGTATGTGACCGAGGAGACAACTTTCCTGATTCCTAAGGCTT
CGATCAAGCGCATCATGAAACTGGACCCGGACTCGAAGCAATTATCCCAG
GACGCCATCATGCTAATGGCCAAGGCCACGGAGTTGTTTGTGGATAAGCT
TGCCAAGGCCTCGCATGCAATGGCGGTATCGAATAAACGGAAGACGATAA
AGTATGAGGACATTGCTGATGCCCGCCTTTCGGTTAAGTCTCTGGAGTTT
TTGGATGGAGTGGTGCCGCAGATTCCCTGAAGAGAAGTAAAGTGAAAGAG
AATGAGACAAAGAATACGTGGATCATATTTATCAACGTGCATATCTGTAA
TAAAAGAAAAAAGGAAGACATTAAAGATTTG
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protein sequence of NO04G01440.1

>NO04G01440.1-protein ID=NO04G01440.1-protein|Name=NO04G01440.1|organism=Nannochloropsis oceanica|type=polypeptide|length=174bp
MSSSTPTEEEVPSAPAETAPAQLPAPDPPAATTDAVPDAAIEDTKRPAAE
AMTEGEGAVASVAAPIPSKKPRNAPAPPISATSEYVTEETTFLIPKASIK
RIMKLDPDSKQLSQDAIMLMAKATELFVDKLAKASHAMAVSNKRKTIKYE
DIADARLSVKSLEFLDGVVPQIP*
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Synonyms
Publications