NO03G03930, NO03G03930 (gene) Nannochloropsis oceanica

Overview
NameNO03G03930
Unique NameNO03G03930
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2828
Alignment locationchr3:1151107..1153934 -

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Properties
Property NameValue
DescriptionRNA binding protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1151107..1153934 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR000504RRM_dom
Homology
[Close]
BLAST of NO03G03930 vs. NCBI_GenBank
Match: XP_005832831.1 (hypothetical protein GUITHDRAFT_108300 [Guillardia theta CCMP2712] >EKX45851.1 hypothetical protein GUITHDRAFT_108300 [Guillardia theta CCMP2712])

HSP 1 Score: 96.3 bits (238), Expect = 1.100e-16
Identity = 42/74 (56.76%), Postives = 53/74 (71.62%), Query Frame = 0 
Query:    6 VYVGNLDPDATDRDLDKEFARYGKIAHIWIARKPPGFAFVTYEDERDAMDACAELNGKSILAQRVRVEISQNTR 80
            V+VGNL PDA  RDL   F +YG+I   W+ARKPPGF FV ++D+RDA DAC +L+G  ++  RVRVEIS   R
Sbjct:    2 VFVGNLPPDAEGRDLQDFFRKYGQINDAWVARKPPGFGFVWFDDDRDARDACQDLDGTDLMGNRVRVEISTGRR 75
[Close]
BLAST of NO03G03930 vs. NCBI_GenBank
Match: XP_012769827.1 (splicing factor, arginine/serine-rich 3, putative [Babesia bigemina] >CDR97641.1 splicing factor, arginine/serine-rich 3, putative [Babesia bigemina])

HSP 1 Score: 96.3 bits (238), Expect = 1.100e-16
Identity = 40/75 (53.33%), Postives = 58/75 (77.33%), Query Frame = 0 
Query:    5 KVYVGNLDPDATDRDLDKEFARYGKIAHIWIARKPPGFAFVTYEDERDAMDACAELNGKSILAQRVRVEISQNTR 80
            KVY+GNL+P+AT  D++  F+++G IA++W+AR+PPGFAFVT+ED RDA DA  EL+G     Q ++VE+S+  R
Sbjct:   12 KVYIGNLNPEATVDDVESLFSKFGTIANVWVARRPPGFAFVTFEDSRDASDAIDELDGTEFKGQNLKVELSKGPR 86
[Close]
BLAST of NO03G03930 vs. NCBI_GenBank
Match: XP_001610609.1 (splicing factor, arginine/serine-rich 3 [Babesia bovis T2Bo] >EDO07041.1 splicing factor, arginine/serine-rich 3, putative [Babesia bovis] >BAN64825.1 splicing factor, arginine/serine-rich 3, putative [Babesia bovis] >BAN66124.1 splicing factor, arginine/serine-rich 3, putative [Babesia bovis])

HSP 1 Score: 95.9 bits (237), Expect = 1.500e-16
Identity = 40/75 (53.33%), Postives = 57/75 (76.00%), Query Frame = 0 
Query:    5 KVYVGNLDPDATDRDLDKEFARYGKIAHIWIARKPPGFAFVTYEDERDAMDACAELNGKSILAQRVRVEISQNTR 80
            KVY+GNL+P+AT  D++  F+++G I +IW+AR+PPGFAFVT+ED RDA DA  EL+G     Q ++VE+S+  R
Sbjct:   12 KVYIGNLNPEATVEDVESLFSKFGTIGNIWVARRPPGFAFVTFEDPRDATDAIEELDGSEYKGQNLKVELSKGPR 86
[Close]
BLAST of NO03G03930 vs. NCBI_GenBank
Match: XP_787177.1 (PREDICTED: probable splicing factor, arginine/serine-rich 6 [Strongylocentrotus purpuratus])

HSP 1 Score: 95.5 bits (236), Expect = 2.000e-16
Identity = 40/73 (54.79%), Postives = 56/73 (76.71%), Query Frame = 0 
Query:    3 EAKVYVGNLDPDATDRDLDKEFARYGKIAHIWIARKPPGFAFVTYEDERDAMDACAELNGKSILAQRVRVEIS 76
            E KVYVGNL   A+  +L++ F+RYG++ ++W+AR PPGFAFV +EDERDA DAC  L+ +++   RVRVE+S
Sbjct:   15 ECKVYVGNLPSGASRTELEEAFSRYGRVKNVWVARNPPGFAFVMFEDERDASDACKALDDRNVCGVRVRVEMS 87
[Close]
BLAST of NO03G03930 vs. NCBI_GenBank
Match: XP_022187740.1 (serine/arginine-rich splicing factor 7-like isoform X2 [Nilaparvata lugens])

HSP 1 Score: 94.0 bits (232), Expect = 5.700e-16
Identity = 40/78 (51.28%), Postives = 57/78 (73.08%), Query Frame = 0 
Query:    2 PEAKVYVGNLDPDATDRDLDKEFARYGKIAHIWIARKPPGFAFVTYEDERDAMDACAELNGKSILAQRVRVEISQNTR 80
            P+ K+YVG+L   A+ +DL+  F+ YG I ++W+AR PPGFAFV +ED RDA DA   L+G+S+  +RVRVE+S  +R
Sbjct:   11 PDCKIYVGDLGSSASKQDLEDAFSYYGPIRNVWVARNPPGFAFVEFEDPRDAEDAVRGLDGRSVCGRRVRVEMSNGSR 88
[Close]
BLAST of NO03G03930 vs. NCBI_GenBank
Match: XP_020602298.1 (serine/arginine-rich splicing factor 7-like [Orbicella faveolata])

HSP 1 Score: 93.2 bits (230), Expect = 9.700e-16
Identity = 38/72 (52.78%), Postives = 56/72 (77.78%), Query Frame = 0 
Query:    5 KVYVGNLDPDATDRDLDKEFARYGKIAHIWIARKPPGFAFVTYEDERDAMDACAELNGKSILAQRVRVEISQ 77
            +VYVGNL  + + R+L++EF R+G +  +W+AR PPGFAFV +ED RDA DAC E++GK I  ++VRVE+++
Sbjct:    3 RVYVGNLGKNGSRRELEREFERFGPLRDVWVARNPPGFAFVLFEDARDAEDACHEMDGKYICGEKVRVEMAR 74
[Close]
BLAST of NO03G03930 vs. NCBI_GenBank
Match: XP_001952396.1 (PREDICTED: serine/arginine-rich splicing factor 7-like [Acyrthosiphon pisum] >XP_022174683.1 serine/arginine-rich splicing factor 7-like [Myzus persicae])

HSP 1 Score: 92.8 bits (229), Expect = 1.300e-15
Identity = 40/74 (54.05%), Postives = 55/74 (74.32%), Query Frame = 0 
Query:    2 PEAKVYVGNLDPDATDRDLDKEFARYGKIAHIWIARKPPGFAFVTYEDERDAMDACAELNGKSILAQRVRVEIS 76
            P+ K+YVG+L   A+ +DL+  F+ YG I ++W+AR PPGFAFV +ED RDA DA   L+G+SI  +RVRVE+S
Sbjct:   13 PDCKIYVGDLGSSASKQDLEDAFSYYGSIRNVWVARNPPGFAFVEFEDPRDAEDAVRGLDGRSICGRRVRVELS 86
[Close]
BLAST of NO03G03930 vs. NCBI_GenBank
Match: XP_015375652.1 (PREDICTED: serine/arginine-rich splicing factor 7-like [Diuraphis noxia])

HSP 1 Score: 92.8 bits (229), Expect = 1.300e-15
Identity = 40/74 (54.05%), Postives = 55/74 (74.32%), Query Frame = 0 
Query:    2 PEAKVYVGNLDPDATDRDLDKEFARYGKIAHIWIARKPPGFAFVTYEDERDAMDACAELNGKSILAQRVRVEIS 76
            P+ K+YVG+L   A+ +DL+  F+ YG I ++W+AR PPGFAFV +ED RDA DA   L+G+SI  +RVRVE+S
Sbjct:   13 PDCKIYVGDLGSSASKQDLEDAFSYYGSIRNVWVARNPPGFAFVEFEDPRDAEDAVRGLDGRSICGRRVRVELS 86
[Close]
BLAST of NO03G03930 vs. NCBI_GenBank
Match: XP_021608202.1 (serine/arginine-rich splicing factor RSZ22A-like [Manihot esculenta] >OAY53546.1 hypothetical protein MANES_03G004900 [Manihot esculenta])

HSP 1 Score: 92.8 bits (229), Expect = 1.300e-15
Identity = 41/76 (53.95%), Postives = 58/76 (76.32%), Query Frame = 0 
Query:    4 AKVYVGNLDPDATDRDLDKEFARYGKIAHIWIARKPPGFAFVTYEDERDAMDACAELNGKSILAQRVRVEISQNTR 80
            ++VYVGNLDP  T+RDL+ EF R+G I  +W+AR+PPG+AF+ ++D+RDA DA  EL+GK+      RVE+S N+R
Sbjct:    2 SRVYVGNLDPRVTERDLEDEFRRFGVIRSVWVARRPPGYAFIDFDDKRDAEDAIHELDGKN----GWRVELSHNSR 73
[Close]
BLAST of NO03G03930 vs. NCBI_GenBank
Match: XP_020613936.1 (probable splicing factor, arginine/serine-rich 6 [Orbicella faveolata])

HSP 1 Score: 92.8 bits (229), Expect = 1.300e-15
Identity = 38/73 (52.05%), Postives = 56/73 (76.71%), Query Frame = 0 
Query:    5 KVYVGNLDPDATDRDLDKEFARYGKIAHIWIARKPPGFAFVTYEDERDAMDACAELNGKSILAQRVRVEISQN 78
            KVYVGNL  + + ++L++EF R+G++  +W+AR PPGFAFV +E+ RDA DAC  L+G  I  +RVRVE+++N
Sbjct:   11 KVYVGNLGNNGSKKELEREFERFGRLHDVWVARNPPGFAFVEFEEYRDAEDACKSLDGARICGERVRVEMARN 83
The following BLAST results are available for this feature:
BLAST of NO03G03930 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005832831.11.100e-1656.76hypothetical protein GUITHDRAFT_108300 [Guillardia... [more]
XP_012769827.11.100e-1653.33splicing factor, arginine/serine-rich 3, putative ... [more]
XP_001610609.11.500e-1653.33splicing factor, arginine/serine-rich 3 [Babesia b... [more]
XP_787177.12.000e-1654.79PREDICTED: probable splicing factor, arginine/seri... [more]
XP_022187740.15.700e-1651.28serine/arginine-rich splicing factor 7-like isofor... [more]
XP_020602298.19.700e-1652.78serine/arginine-rich splicing factor 7-like [Orbic... [more]
XP_001952396.11.300e-1554.05PREDICTED: serine/arginine-rich splicing factor 7-... [more]
XP_015375652.11.300e-1554.05PREDICTED: serine/arginine-rich splicing factor 7-... [more]
XP_021608202.11.300e-1553.95serine/arginine-rich splicing factor RSZ22A-like [... [more]
XP_020613936.11.300e-1552.05probable splicing factor, arginine/serine-rich 6 [... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL068nonsL068Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR052ngnoR052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005504NSK005504Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G03930.1NO03G03930.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|667496gene_1589Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G03930.1NO03G03930.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G03930 ID=NO03G03930|Name=NO03G03930|organism=Nannochloropsis oceanica|type=gene|length=2828bp
ATTACGCATGAGCACTGCCATCATTTCTTTTCATGACATGACGTGACACA
AACAGAATGTTTACCACACATTTTCTGAATTTACTTCATCTGTTTTGATG
ACCCTTAAGCGTCGTAGTGGAATCTCTCATGTTATGACGGCCCTCCCTCC
GCGCATGTACCGGCGACCGAGTTCCTCAGCGAATCAACGATTGCCTGGCA
GTCAAATACGCCCTCATCATTTCTAACCGCCACCTTCGATGATGGACCAC
GAATTTCGTACTCGCACCCCATACCAATTTAACACGTATACATATCTACA
CATACATTACCTATGAATGAATCACAACTAATCCGCTTTTCCCCTCCCCA
ACTTCTACGACGATAACGACAAATCCACTGAGGCATACTCCGCAGTGTAC
ATCTTTGCCAACGAGTTAAACGCCCGCATGTCCCCCGCCCTGACCATGTT
ACCCGCGTCACAGTTCAAAGGGCTGTCCGCATCCGGCGCGGCCAACAAGG
CCATAACGGCCCGACAGGCCGCCTGCAGACTCCATGCGGGCGACCACTCC
TTCTTCAAAATGTCCAAACAAATCTCACCCGTCTCAAAATGAATGTTGGG
GTGGAAGACCCGTGTGATGAAATGGATGAGCGGAGGGCGGAGGGGGTATT
CTGGTCCTACCTCGATGAGGAGCTGAAATGTCCCTCCCTCAAAGGGGGTC
TCGCCTGGGCCACGAATTACGGCCTGCCACCTCCGTATGTCGTTTTGCTG
CGGCTGGAGGTCGATGTCGGCGTCCGGGGCTCGTTCCAAGGCTTGCAGCT
CCTGTGTTGTGGAAGAGTGATCGGTGCAGAGAGATGAAGGGCTGCTTTGC
TTTGTGAAGGGTGGAAAACTTTACCTTGCGCAGTCGTTTGAGCGGTCCCA
TGGCCATAACTACCGCGCTTCGTATTGCTGCGGCGTAAATGTGCCTGTAC
TGGGAGCATGGAAGGCGTTTTGAGCGTTGGAAAAAGGGCTTGGAATGCTG
CTGCCAAGTTGCTGATAAAAAAACAATAGAGGACTTCGGCGACCGGTGTG
GCGACTGGGACCCGGATTACGAAGGTTACTTCGCCTGCCTTCTCCCGGAG
GGGCTCGTCACAACTAAGGGTGGCGATCCTTTGCGCCTCTACATGCACCA
CCCGCACCCCGCACCACCACAACTACACCGATGAGGACAAGGATGACGCC
CTGTCCTTTTACCGCGCCTTCTTTTGCCTTGATCGTTAAACATCGCCCTC
AAAGCTCTCCCATGCCCCTTCTTCTTCGCCCTCCCCCATCCAACACCCTG
CACTGCACCACCCTTGACCGCGCCCCGCGCACCATTCTCCCCTCGCCCCT
TCTCCCTTTCCTTCTTCTCTGCATATTCTTCTGCATGCCATACGCCTCCT
TGTCCCATCCCTGCCTCCTCGTCTTTGTGGTGAGAACGAGCCGGCCTCTT
CTGCGGAAGATATTCGACGGACGGTGCCTGTGCAACACCACCCTCATCCG
GCCAGCGGCACCACACCCACTCGCACACAAGCAGCACATGCATACGTAGC
CCTTTGACAGGCAGCGGCGACCGCTTCTGCGCAACCCTCGTCTTCTTCCA
CTTATCCCCCTCATCCTCCCATCATCACTTCGTCTCTTCACCTGCACATC
TACCATCAACACCAACAACCATACACTACTTCTTCCATTTTCATCACCAC
CATCACGCAGCCATAATAACAACAAGAAAAGTAAGCAAACATGCCTGAAG
CCAAGGTGTACGTGGGGAATCTTGACCCCGATGCCACGGACCGTGACCTC
GACAAAGAGTTTGCCCGGTATGGCAAGATTGCGCACATTTGGATTGCCCG
CAAGCCACCTGgtaagtcagaagaagacagagccatgcaacgaatggaaa
gtgacaaatgagtcgattttagacagcgaatagaaaagcgaagtaaatga
gcattctaatcaccccccctcccccccccttccttgtcccactcgaaata
gGGTTCGCTTTCGTAACCTATGAAGATGAGCGGGATGCCATGGACGCTTG
TGCAGAGCTGAATGGCAAGTCCATCCTCGCTCAGCGTGTGCGTGTCGAGA
TTTCTCAGAACACCCGCGGGGGGGGAGGACGAGGGGGAGGTGGGGGCCGG
GGGCGAGATTATGGCGGGCGGGATTACGGAGGTGGGGGCGGACGACGCGA
TGACCGATACGGAGGGGGGGGGCGATCTCGTTCCCCTCCCCGTCGTCAGC
GCAGTGATTCACGTGATCGCCGAGCGGTTCGTCGTTCTCCTTCTTACGAC
CGCGTGGCTCCTCATGCTCGTTCTCGTTCTCGCAGTCCGGCACGGAATGG
CGGTGGGGGGCGGAGCCGCAGTCCAAGCCCGCGTGGTGGAGGATATGGAG
CGGGAGGAAGAGGTCGGAGCCCTAGCCCAGGTCGTCGCTCTCTCTCCCCT
CCTCGCGGACGCTCGCCTCGGTAAAGGGTAGGGAAGACCGCTGATACCGG
TTGAGAAATAAGAGGGGGGAAAGTCTTGCTTTTCTGATTTCTCCATTTCC
CCCCCCGTCCATTAATCACTACCAGTCTAGGATGTGTGTGTATGTGTTAG
TATGAGGGAGAAGGTGTAAATGTGTTCTCTGCGTCATATAAAACACAAGA
GGTAGCGGAAGGCAGGGCATCAGCTGCATCCCAAAAAGAATTAGAGGACT
TCAGATGCTGGCCTCTTGCTCGCTAACGGATAACTTCTCATTTTGCTGTT
TTGCGGCCTGTGTGGGTATTTCAACAATTCGCCCACGGGAAAGGCAAAGA
CCACACAAACAACAATACCTAAATCCGA
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protein sequence of NO03G03930.1

>NO03G03930.1-protein ID=NO03G03930.1-protein|Name=NO03G03930.1|organism=Nannochloropsis oceanica|type=polypeptide|length=198bp
MPEAKVYVGNLDPDATDRDLDKEFARYGKIAHIWIARKPPGFAFVTYEDE
RDAMDACAELNGKSILAQRVRVEISQNTRGGGGRGGGGGRGRDYGGRDYG
GGGGRRDDRYGGGGRSRSPPRRQRSDSRDRRAVRRSPSYDRVAPHARSRS
RSPARNGGGGRSRSPSPRGGGYGAGGRGRSPSPGRRSLSPPRGRSPR*
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Synonyms
Publications