NO03G03750, NO03G03750 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO03G03750 vs. NCBI_GenBank
Match: PON65882.1 (U1 small nuclear ribonucleoprotein A/U2 small nuclear ribonucleoprotein B'' [Parasponia andersonii]) HSP 1 Score: 158.7 bits (400), Expect = 2.700e-35 Identity = 95/251 (37.85%), Postives = 146/251 (58.17%), Query Frame = 0 Query: 35 TPTATVYVNNINEKVRGEKLMQGLKQVFTPIGKVKKIHARKSLKLRGQAFIIYDRVVDAQSAVTKLQGFSFYGKSLRLAFADCPSDLTLKARGE-VP-ERRPAHPKKGMVAVKLEKVGSSGGRAVPKATPVAQPFAPEAAFGSRPPPPPM-QPGHVNGAAAEGHMSTAALPPALPHNVLFCEELPSEATEEMLATLFAQYAGFKGVRMVRAR-ACAFVDFGSEPEATTALHGLAGFKLTEENPLKVSYARQ 282 +P T+Y+NN+NEK++ ++L + L VF+ GK+ ++ A K+LK +GQA++++ V A +A+ ++QGF FY K +R+ +A SD+ KA G VP E+R H KG K + + G + A P A+G+ PP + PG V E PA P+N+LF + LP E T ML LF QY GFK VRMV + AFV++G E ++T A+ GL GFK+T++N + ++YA++ Sbjct: 11 SPNMTIYINNLNEKIKLDELKKSLNAVFSQFGKILEVLAFKTLKHKGQAWVVFQDVSSANNALRQMQGFPFYDKPMRIQYAKTKSDVIAKADGTFVPREKRKKHEDKGKKR-KDQHDANQAGMGLNPAYP--------GAYGAAPPLSQVPYPGSVKSMVPEA--------PAPPNNILFVQNLPQETTPMMLQMLFCQYPGFKEVRMVETKPGIAFVEYGDEMQSTVAMQGLQGFKMTQQNSMLITYAKK 244
BLAST of NO03G03750 vs. NCBI_GenBank
Match: XP_010545001.1 (PREDICTED: U1 small nuclear ribonucleoprotein A [Tarenaya hassleriana]) HSP 1 Score: 158.3 bits (399), Expect = 3.500e-35 Identity = 103/260 (39.62%), Postives = 153/260 (58.85%), Query Frame = 0 Query: 28 EAHMDDDTPT-ATVYVNNINEKVRGEKLMQGLKQVFTPIGKVKKIHARKSLKLRGQAFIIYDRVVDAQSAVTKLQGFSFYGKSLRLAFADCPSDLTLKARGE-VP-ERRPAHPKKGMVAVKLEKVGSSGGRAVPKATPVAQPFAPEAAFGSRPPPPPMQPGHVNGAAAEGHMSTAALP--PALPHNVLFCEELPSEATEEMLATLFAQYAGFKGVRMVRAR-ACAFVDFGSEPEATTALHGLAGFKLTEENPLKVSYARQ 282 EA+ + P+ T+Y+NN+NEKV+ ++L + L VF+ GK+ ++ A K+LK +GQA++++D V A +A+ K+ GF FY K +RL FA SD+ KA G VP E+R H +KG K + + SS + T + P A G PP+ G A A+P PA P+N+LF + LP E T ML LF QYAGFK VRM+ A+ AFV+FG E ++T A+ GL GFK+ ++N + ++YA++ Sbjct: 5 EANKGTEIPSNQTIYINNLNEKVKLDELKKSLNAVFSQFGKILEVLAFKTLKHKGQAWVVFDNVESASNAIAKMNGFPFYDKPMRLQFAKTKSDIIAKADGSFVPREKRKRHEEKGGKKRKDQNLDSS------QMTAASIP----AYLGMYGAAPPLSQVPYAGGA------RPAVPEAPAPPNNILFVQNLPHETTPMMLQMLFCQYAGFKEVRMIEAKPGIAFVEFGDEMQSTVAMQGLQGFKI-QQNQMLITYAKK 247
BLAST of NO03G03750 vs. NCBI_GenBank
Match: XP_017437795.1 (PREDICTED: U1 small nuclear ribonucleoprotein A [Vigna angularis] >KOM55702.1 hypothetical protein LR48_Vigan10g159400 [Vigna angularis]) HSP 1 Score: 158.3 bits (399), Expect = 3.500e-35 Identity = 96/250 (38.40%), Postives = 144/250 (57.60%), Query Frame = 0 Query: 35 TPTATVYVNNINEKVRGEKLMQGLKQVFTPIGKVKKIHARKSLKLRGQAFIIYDRVVDAQSAVTKLQGFSFYGKSLRLAFADCPSDLTLKARGE-VP-ERRPAHPKKGMVAVKLEKVGSSGGRAVPKATPVAQPFAPEAAFGSRPPPPPMQPGHVNGAAAEGHMSTAALPPALPHNVLFCEELPSEATEEMLATLFAQYAGFKGVRMVRAR-ACAFVDFGSEPEATTALHGLAGFKLTEENPLKVSYARQ 282 T T+Y+NN+NEK++ ++L + L VFT GK+ ++ A K+LK +GQA+++++ V A +A+ ++QGF FY K +R+ +A SD+ KA G VP E+R H KG +G P A A+G+ P P PG G S PA P+N+LF + LP+E+T ML LF QY GFK VRMV A+ AFV++G E ++T A+ L GFK+T +NP+ ++YA++ Sbjct: 11 TQNNTIYINNLNEKIKIDELKKSLNAVFTQFGKILEVLAFKTLKHKGQAWVVFEEVSSASNALRQMQGFPFYDKPMRIQYAKTKSDVIAKADGTFVPREKRKRHDDKGKKRKDQHDANLAGMGLNP---------AYSGAYGATPTIP--YPG--------GAKSMVPEAPAPPNNILFIQNLPNESTPMMLQMLFLQYPGFKEVRMVEAKPGIAFVEYGDEMQSTVAMQSLQGFKITPQNPMLITYAKK 241
BLAST of NO03G03750 vs. NCBI_GenBank
Match: PON55305.1 (U1 small nuclear ribonucleoprotein A/U2 small nuclear ribonucleoprotein B'' [Trema orientalis]) HSP 1 Score: 158.3 bits (399), Expect = 3.500e-35 Identity = 95/251 (37.85%), Postives = 146/251 (58.17%), Query Frame = 0 Query: 35 TPTATVYVNNINEKVRGEKLMQGLKQVFTPIGKVKKIHARKSLKLRGQAFIIYDRVVDAQSAVTKLQGFSFYGKSLRLAFADCPSDLTLKARGE-VP-ERRPAHPKKGMVAVKLEKVGSSGGRAVPKATPVAQPFAPEAAFGSRPPPPPM-QPGHVNGAAAEGHMSTAALPPALPHNVLFCEELPSEATEEMLATLFAQYAGFKGVRMVRAR-ACAFVDFGSEPEATTALHGLAGFKLTEENPLKVSYARQ 282 +P T+Y+NN+NEK++ ++L + L VF+ GK+ ++ A K+LK +GQA++++ V A +A+ ++QGF FY K +R+ +A SD+ KA G VP E+R H KG K + + G + A P A+G+ PP + PG V E PA P+N+LF + LP E T ML LF QY GFK VRMV + AFV++G E ++T A+ GL GFK+T++N + ++YA++ Sbjct: 11 SPNMTIYINNLNEKIKLDELKKSLNAVFSQFGKILEVLAFKTLKHKGQAWVVFQDVSSATNALRQMQGFPFYDKPMRIQYAKTKSDVIAKADGTFVPREKRKKHEDKGKKR-KDQHDANQAGMGLNPAYP--------GAYGAAPPLSQVPYPGSVKSMVPEA--------PAPPNNILFVQNLPQETTPMMLQMLFCQYPGFKEVRMVETKPGIAFVEYGDEMQSTVAMQGLQGFKMTQQNSMLITYAKK 244
BLAST of NO03G03750 vs. NCBI_GenBank
Match: XP_010931676.1 (PREDICTED: U1 small nuclear ribonucleoprotein A [Elaeis guineensis]) HSP 1 Score: 157.9 bits (398), Expect = 4.600e-35 Identity = 93/250 (37.20%), Postives = 145/250 (58.00%), Query Frame = 0 Query: 36 PTATVYVNNINEKVRGEKLMQGLKQVFTPIGKVKKIHARKSLKLRGQAFIIYDRVVDAQSAVTKLQGFSFYGKSLRLAFADCPSDLTLKARGE-VP-ERRPAHPKKGMVAVKLEKVGSSGGRAVPKATPVAQPFAPEAAFGSRPPPPPM-QPGHVNGAAAEGHMSTAALPPALPHNVLFCEELPSEATEEMLATLFAQYAGFKGVRMVRAR-ACAFVDFGSEPEATTALHGLAGFKLTEENPLKVSYARQ 282 P T+Y+NN+NEK++ ++L + L VF+ GK+ ++ A K+LK +GQA++++ V A A+ ++QGF FY K +R+ +A SD+ KA G VP ERR H ++ +++ ++ + P +G+ PP + PG G S PALP+N+LF + LP E T ML LF QY GFK VRMV A+ AFV++G E + T A+ GL GFK+T++NP+ ++YA++ Sbjct: 13 PNMTIYINNLNEKIKMDELKKSLHAVFSQFGKILEVLAFKTLKHKGQAWVVFKDVSSASEALKRMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPRERRKRHEERXXXXXXXQQLDAAQTGSGP--------------YGATPPLSQLPYPG--------GAKSMIPEAPALPNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMVDAKPGIAFVEYGDEMQGTLAMQGLQGFKITQQNPMLITYAKK 240
BLAST of NO03G03750 vs. NCBI_GenBank
Match: NP_001274791.1 (uncharacterized protein LOC102601989 [Solanum tuberosum] >CAA90282.1 U1snRNP-specific protein, U1A [Solanum tuberosum]) HSP 1 Score: 157.5 bits (397), Expect = 6.000e-35 Identity = 94/251 (37.45%), Postives = 149/251 (59.36%), Query Frame = 0 Query: 36 PTATVYVNNINEKVRGEKLMQGLKQVFTPIGKVKKIHARKSLKLRGQAFIIYDRVVDAQSAVTKLQGFSFYGKSLRLAFADCPSDLTLKARGE-VP-ERRPAHPKKGMVAVKLEKVGSSGGRAVPKATPVAQPFAPEAAFGSRPPPPPMQPGHVNGAAAEGHMSTAALP--PALPHNVLFCEELPSEATEEMLATLFAQYAGFKGVRMVRAR-ACAFVDFGSEPEATTALHGLAGFKLTEENPLKVSYARQ 282 P T+Y+NN+NEK++ E+L + + VF+ GK+ ++ A K+LK +GQA+++++ V A +A+ ++QGF FY K +R+ +A SD+ KA G VP E+R H KG + +G P A A+G+ PP Q ++ GA AA+P PA P+++LF + LP ++T ML LF QY GFK VRM+ A+ AF+++G E ++T A+ L GFK+T ENP+ ++YA++ Sbjct: 21 PNVTIYINNLNEKIKLEELKKSMHAVFSQFGKILEVLAFKTLKHKGQAWVVFEEVSSASNALRQMQGFPFYDKPMRIQYAKTKSDVVAKADGTFVPREKRKRHEDKGRKKKDQQDSNQAGMGLNP---------AYAGAYGA--APPFSQIPYMGGA-------KAAVPEAPAPPNSILFVQNLPHQSTPMMLQMLFCQYPGFKEVRMIEAKPGIAFIEYGDEMQSTVAMQALQGFKITAENPMLITYAKK 253
BLAST of NO03G03750 vs. NCBI_GenBank
Match: XP_009770643.1 (PREDICTED: U1 small nuclear ribonucleoprotein A [Nicotiana sylvestris] >XP_016433582.1 PREDICTED: U1 small nuclear ribonucleoprotein A-like [Nicotiana tabacum]) HSP 1 Score: 157.5 bits (397), Expect = 6.000e-35 Identity = 96/252 (38.10%), Postives = 145/252 (57.54%), Query Frame = 0 Query: 35 TPTATVYVNNINEKVRGEKLMQGLKQVFTPIGKVKKIHARKSLKLRGQAFIIYDRVVDAQSAVTKLQGFSFYGKSLRLAFADCPSDLTLKARGE-VP-ERRPAHPKKGMVAVKLEKVGSSGGRAVPKATPVAQPFAPEAAFGSRPPPPPMQPGHVNGAAAEGHMSTAALP--PALPHNVLFCEELPSEATEEMLATLFAQYAGFKGVRMVRAR-ACAFVDFGSEPEATTALHGLAGFKLTEENPLKVSYARQ 282 TP T+Y+NN+NEK++ E+L + L VF+ GK+ ++ A K+LK +GQA+++++ V A +A+ ++QGF FY K +R+ +A SD+ KA G VP E+R H KG + P A P A PP Q ++ GA AA+P PA P+++LF + LP ++T ML LF QY GFK VRMV + AFV++G E ++T A+ L GFK+T ENP+ ++YA++ Sbjct: 22 TPNVTIYINNLNEKIKLEELKKSLHAVFSQFGKILEVLAFKTLKHKGQAWVVFEEVSSASNALRQMQGFPFYDKPMRIQYAKTKSDVVAKADGTFVPREKRKRHEDKGRKK-----------KDQPDANQAGMGLNPAYAGAYGAAPPFSQIPYMGGA-------KAAVPEAPAPPNSILFVQNLPHQSTPMMLQMLFFQYPGFKEVRMVETKPGIAFVEYGDEMQSTVAMQALQGFKITPENPMLITYAKK 255
BLAST of NO03G03750 vs. NCBI_GenBank
Match: XP_014491470.1 (U1 small nuclear ribonucleoprotein A [Vigna radiata var. radiata]) HSP 1 Score: 157.5 bits (397), Expect = 6.000e-35 Identity = 95/246 (38.62%), Postives = 143/246 (58.13%), Query Frame = 0 Query: 39 TVYVNNINEKVRGEKLMQGLKQVFTPIGKVKKIHARKSLKLRGQAFIIYDRVVDAQSAVTKLQGFSFYGKSLRLAFADCPSDLTLKARGE-VP-ERRPAHPKKGMVAVKLEKVGSSGGRAVPKATPVAQPFAPEAAFGSRPPPPPMQPGHVNGAAAEGHMSTAALPPALPHNVLFCEELPSEATEEMLATLFAQYAGFKGVRMVRAR-ACAFVDFGSEPEATTALHGLAGFKLTEENPLKVSYARQ 282 T+Y+NN+NEK++ ++L + L VFT GK+ ++ A K+LK +GQA+++++ V A +A+ ++QGF FY K +R+ +A SD+ KA G VP E+R H KG +G P A A+G+ P P PG G S PA P+N+LF + LP+E+T ML LF QY GFK VRMV A+ AFV++G E ++T A+ L GFK+T +NP+ ++YA++ Sbjct: 15 TIYINNLNEKIKIDELKKSLNAVFTQFGKILEVLAFKTLKHKGQAWVVFEEVSSASNALRQMQGFPFYDKPMRIQYAKTKSDVIAKADGTFVPREKRKRHDDKGKKRKDQHDANLAGMGLNP---------AYSGAYGATPMIP--YPG--------GAKSMVPEAPAPPNNILFIQNLPNESTPMMLQMLFLQYPGFKEVRMVEAKPGIAFVEYGDEMQSTVAMQSLQGFKITPQNPMLITYAKK 241
BLAST of NO03G03750 vs. NCBI_GenBank
Match: XP_015086073.1 (PREDICTED: U1 small nuclear ribonucleoprotein A isoform X2 [Solanum pennellii]) HSP 1 Score: 157.5 bits (397), Expect = 6.000e-35 Identity = 94/251 (37.45%), Postives = 149/251 (59.36%), Query Frame = 0 Query: 36 PTATVYVNNINEKVRGEKLMQGLKQVFTPIGKVKKIHARKSLKLRGQAFIIYDRVVDAQSAVTKLQGFSFYGKSLRLAFADCPSDLTLKARGE-VP-ERRPAHPKKGMVAVKLEKVGSSGGRAVPKATPVAQPFAPEAAFGSRPPPPPMQPGHVNGAAAEGHMSTAALP--PALPHNVLFCEELPSEATEEMLATLFAQYAGFKGVRMVRAR-ACAFVDFGSEPEATTALHGLAGFKLTEENPLKVSYARQ 282 P T+Y+NN+NEK++ E+L + + VF+ GK+ ++ A K+LK +GQA+++++ V A +A+ ++QGF FY K +R+ +A SD+ KA G VP E+R H KG + +G P A A+G+ PP Q ++ GA AA+P PA P+++LF + LP ++T ML LF QY GFK VRMV A+ AF+++G E ++T A+ L GFK+T +NP+ ++YA++ Sbjct: 21 PNVTIYINNLNEKIKLEELKKSMHAVFSQFGKILEVLAFKTLKHKGQAWVVFEEVSSASNALRQMQGFPFYDKPMRIQYAKTKSDVVAKADGTFVPREKRKRHEDKGRKKKDQQDANQAGMGRNP---------AYAGAYGA--APPFSQIPYMGGA-------KAAVPEAPAPPNSILFVQNLPHQSTPMMLQMLFCQYPGFKEVRMVEAKPGIAFIEYGDEMQSTVAMQALQGFKITADNPMLITYAKK 253
BLAST of NO03G03750 vs. NCBI_GenBank
Match: XP_018843610.1 (PREDICTED: U1 small nuclear ribonucleoprotein A-like isoform X2 [Juglans regia]) HSP 1 Score: 157.5 bits (397), Expect = 6.000e-35 Identity = 97/249 (38.96%), Postives = 144/249 (57.83%), Query Frame = 0 Query: 36 PTATVYVNNINEKVRGEKLMQGLKQVFTPIGKVKKIHARKSLKLRGQAFIIYDRVVDAQSAVTKLQGFSFYGKSLRLAFADCPSDLTLKARGE-VP-ERRPAHPKKGMVAVKLEKVGSSGGRAVPKATPVAQPFAPEAAFGSRPPPPPMQPGHVNGAAAEGHMSTAALPPALPHNVLFCEELPSEATEEMLATLFAQYAGFKGVRMVRAR-ACAFVDFGSEPEATTALHGLAGFKLTEENPLKVSYARQ 282 P T+Y+NN+NEK++ E+L + L VF+ GK+ ++ A K+LK +GQA+++++ V A +A+ ++QGF FY K +R+ +A SD+ K G VP ERR H KG K +K +A P A A+G+ P P PG EG PA P+N+LF + LP E T ML LF QY GFK VRMV + AFV++G E ++T A+ L GFK+T++NP+ ++YA++ Sbjct: 12 PNVTIYINNLNEKIKLEELKKSLLAVFSQFGKILEVLAFKTLKHKGQAWVVFEDVSSASNALRQMQGFPFYDKPMRIQYAKTKSDIIAKGDGTFVPRERRKRHDDKG----KKKKEQHDANQAGMGLNP-----AYAGAYGATPALP--YPGSGKPMLPEG--------PAPPNNILFVQNLPHETTPMMLQMLFYQYTGFKEVRMVETKPGIAFVEYGDEMQSTAAMQALQGFKITQQNPMLITYAKK 241 The following BLAST results are available for this feature:
BLAST of NO03G03750 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO03G03750 ID=NO03G03750|Name=NO03G03750|organism=Nannochloropsis oceanica|type=gene|length=1169bpback to top protein sequence of NO03G03750.1 >NO03G03750.1-protein ID=NO03G03750.1-protein|Name=NO03G03750.1|organism=Nannochloropsis oceanica|type=polypeptide|length=282bpback to top Synonyms
Publications
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