NO03G02590, NO03G02590 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO03G02590
Unique Name	NO03G02590
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	4071
Alignment location	chr3:744841..748911 -

Link to JBrowse

Properties


Property Name	Value
Description	Actin

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr3	genome	chr3:744841..748911 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
PXD016054	2021-01-14
PXD016699	2021-01-08
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
PXD010030	2020-03-16
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
PXD008721	2019-04-30
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004000	Actin

Homology

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BLAST of NO03G02590 vs. NCBI_GenBank
Match: XP_005852345.1 (actin beta/gamma 1, partial [Nannochloropsis gaditana CCMP526] >EKU23482.1 actin beta/gamma 1, partial [Nannochloropsis gaditana CCMP526] >EWM20044.1 actin, partial [Nannochloropsis gaditana])

HSP 1 Score: 760.0 bits (1961), Expect = 3.500e-216
Identity = 373/376 (99.20%), Postives = 375/376 (99.73%), Query Frame = 0

Query:    1 MAEEDVQALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPKHPGIMVGMDQKDAYVGDEAQSKRGVLTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPMNPKANRERMTQIMFETFNVPAMYVNIQAVLSLYASGRTTGCVLDSGDGVSHTVPIYEGYALPHAIVRLDLAGRDLTEYLMKILTERGYSFTTTAEREIVRDIKEKLTYVALDFDQELKVAEESSSLEKSYELPDGNVIVIGSERFRAPEVLFQPSFIGKEASGVHDCTFQTIMKCDVDIRKDLYSNIVLSGGTTMFPGIGERMTKEISALAPATMKVKVVAPPERKYSVWIGGSILSSLSTFQSMWISKAEYDESGPSIVHRKCF 377
            MAEEDVQALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPKHPGIMVGMDQKDAYVGDEAQSKRGVLTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPMNPKANRERMTQIMFETFNVPAMYVNIQAVLSLYASGRTTGCVLDSGDGVSHTVPI+EGYALPHAIVRLDLAGRDLTEYLMKILTERGYSFTTTAEREIVRDIKEKLTYVALDFDQELKVAEESSSLEKSYELPDGNVIV+GSERFRAPEVLFQPSFIGKEASGVHDCTFQTIMKCDVDIRKDLYSNIVLSGGTTMFPGIGERMTKEISALAP TMKVKVVAPPERKYSVWIGGSILSSLSTFQSMWISKAEYDESGPSIVHRKCF
Sbjct:    1 MAEEDVQALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPKHPGIMVGMDQKDAYVGDEAQSKRGVLTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPMNPKANRERMTQIMFETFNVPAMYVNIQAVLSLYASGRTTGCVLDSGDGVSHTVPIFEGYALPHAIVRLDLAGRDLTEYLMKILTERGYSFTTTAEREIVRDIKEKLTYVALDFDQELKVAEESSSLEKSYELPDGNVIVLGSERFRAPEVLFQPSFIGKEASGVHDCTFQTIMKCDVDIRKDLYSNIVLSGGTTMFPGIGERMTKEISALAPPTMKVKVVAPPERKYSVWIGGSILSSLSTFQSMWISKAEYDESGPSIVHRKCF 376

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BLAST of NO03G02590 vs. NCBI_GenBank
Match: XP_009037302.1 (hypothetical protein AURANDRAFT_37636 [Aureococcus anophagefferens] >XP_009039473.1 hypothetical protein AURANDRAFT_60226 [Aureococcus anophagefferens] >EGB05933.1 hypothetical protein AURANDRAFT_60226 [Aureococcus anophagefferens] >EGB07929.1 hypothetical protein AURANDRAFT_37636 [Aureococcus anophagefferens])

HSP 1 Score: 741.1 bits (1912), Expect = 1.700e-210
Identity = 355/374 (94.92%), Postives = 371/374 (99.20%), Query Frame = 0

Query:    3 EEDVQALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPKHPGIMVGMDQKDAYVGDEAQSKRGVLTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPMNPKANRERMTQIMFETFNVPAMYVNIQAVLSLYASGRTTGCVLDSGDGVSHTVPIYEGYALPHAIVRLDLAGRDLTEYLMKILTERGYSFTTTAEREIVRDIKEKLTYVALDFDQELKVAEESSSLEKSYELPDGNVIVIGSERFRAPEVLFQPSFIGKEASGVHDCTFQTIMKCDVDIRKDLYSNIVLSGGTTMFPGIGERMTKEISALAPATMKVKVVAPPERKYSVWIGGSILSSLSTFQSMWISKAEYDESGPSIVHRKCF 377
            +EDVQALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPKHPGIMVGMDQKDAYVGDEAQSKRGVLTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP+NPKANRERMTQIMFETFNVPAMYVNIQAVLSLYASGRTTGCVLDSGDGVSHTVPIYEGYALPHAIVRLDLAGRDLT+Y+MKILTERGYSFTTTAEREIVRDIKEKLTY+ALDFDQE+K A ESS+LEKSYELPDGNVIVIG+ERFR PEVLFQPSFIGKEASG+HDCTFQTIMKCDVDIRKDLYSNIVLSGGTTM+PGIGERMTKE++ALAP+TMK+KVVAPPERKYSVWIGGSILSSLSTFQSMWISKAEYDESGP+IVHRKCF
Sbjct:    5 DEDVQALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPKHPGIMVGMDQKDAYVGDEAQSKRGVLTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANRERMTQIMFETFNVPAMYVNIQAVLSLYASGRTTGCVLDSGDGVSHTVPIYEGYALPHAIVRLDLAGRDLTDYMMKILTERGYSFTTTAEREIVRDIKEKLTYIALDFDQEMKTAAESSALEKSYELPDGNVIVIGNERFRCPEVLFQPSFIGKEASGIHDCTFQTIMKCDVDIRKDLYSNIVLSGGTTMYPGIGERMTKELTALAPSTMKIKVVAPPERKYSVWIGGSILSSLSTFQSMWISKAEYDESGPAIVHRKCF 378

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BLAST of NO03G02590 vs. NCBI_GenBank
Match: XP_008910655.1 (actin-1 [Phytophthora parasitica INRA-310] >XP_009528756.1 hypothetical protein PHYSODRAFT_354739 [Phytophthora sojae] >AAG01044.1 actin [Pythium splendens] >EGZ15007.1 hypothetical protein PHYSODRAFT_354739 [Phytophthora sojae] >ETI30074.1 actin-1 [Phytophthora parasitica P1569] >ETK79685.1 actin-1 [Phytophthora parasitica] >ETL33103.1 actin-1 [Phytophthora parasitica] >ETL86374.1 actin-1 [Phytophthora parasitica] >ETM39537.1 actin-1 [Phytophthora parasitica] >ETN03985.1 actin-1 [Phytophthora parasitica INRA-310] >ETO68252.1 actin-1 [Phytophthora parasitica P1976] >ETP09403.1 actin-1 [Phytophthora parasitica CJ01A1] >ETP37446.1 actin-1 [Phytophthora parasitica P10297])

HSP 1 Score: 735.7 bits (1898), Expect = 7.100e-209
Identity = 354/376 (94.15%), Postives = 368/376 (97.87%), Query Frame = 0

Query:    1 MAEEDVQALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPKHPGIMVGMDQKDAYVGDEAQSKRGVLTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPMNPKANRERMTQIMFETFNVPAMYVNIQAVLSLYASGRTTGCVLDSGDGVSHTVPIYEGYALPHAIVRLDLAGRDLTEYLMKILTERGYSFTTTAEREIVRDIKEKLTYVALDFDQELKVAEESSSLEKSYELPDGNVIVIGSERFRAPEVLFQPSFIGKEASGVHDCTFQTIMKCDVDIRKDLYSNIVLSGGTTMFPGIGERMTKEISALAPATMKVKVVAPPERKYSVWIGGSILSSLSTFQSMWISKAEYDESGPSIVHRKCF 377
            MA+EDVQALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPKH GIMVGMDQKDAYVGDEAQSKRGVLTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP+NPKANRERMTQIMFETFNVPAMYVNIQAVLSLYASGRTTGCVLDSGDGVSHTVPIYEGYALPHAIVRLDLAGRDLT+Y+MKILTERGYSFTTTAEREIVRDIKEKLTY+ALDFDQE+K A ESS LEKSYELPDGNVIVIG+ERFR PEVLFQPS IGKEASG+HDCTFQTIMKCDVDIRKDLY NIVLSGGTTM+PGIGERMTKE++ALAP+TMK+KVVAPPERKYSVWIGGSILSSLSTFQ MWISKAEYDESGPSIVHRKCF
Sbjct:    1 MADEDVQALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPKHLGIMVGMDQKDAYVGDEAQSKRGVLTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANRERMTQIMFETFNVPAMYVNIQAVLSLYASGRTTGCVLDSGDGVSHTVPIYEGYALPHAIVRLDLAGRDLTDYMMKILTERGYSFTTTAEREIVRDIKEKLTYIALDFDQEMKTAAESSGLEKSYELPDGNVIVIGNERFRTPEVLFQPSLIGKEASGIHDCTFQTIMKCDVDIRKDLYCNIVLSGGTTMYPGIGERMTKELTALAPSTMKIKVVAPPERKYSVWIGGSILSSLSTFQQMWISKAEYDESGPSIVHRKCF 376

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BLAST of NO03G02590 vs. NCBI_GenBank
Match: AAO92429.1 (actin A [Phytophthora brassicae])

HSP 1 Score: 735.3 bits (1897), Expect = 9.300e-209
Identity = 353/376 (93.88%), Postives = 368/376 (97.87%), Query Frame = 0

Query:    1 MAEEDVQALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPKHPGIMVGMDQKDAYVGDEAQSKRGVLTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPMNPKANRERMTQIMFETFNVPAMYVNIQAVLSLYASGRTTGCVLDSGDGVSHTVPIYEGYALPHAIVRLDLAGRDLTEYLMKILTERGYSFTTTAEREIVRDIKEKLTYVALDFDQELKVAEESSSLEKSYELPDGNVIVIGSERFRAPEVLFQPSFIGKEASGVHDCTFQTIMKCDVDIRKDLYSNIVLSGGTTMFPGIGERMTKEISALAPATMKVKVVAPPERKYSVWIGGSILSSLSTFQSMWISKAEYDESGPSIVHRKCF 377
            MA+EDVQALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPKH GIMVGMDQKDAYVGDEAQSKRGVLTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP+NPKANRERMTQIMFETFNVPAMYVNIQAVLSLYASGRTTGCVLDSGDGVSHTVPIYEGYALPHAIVRLDLAGRDLT+Y+MKILTERGYSFTTTAEREIVRDIKEKLTY+ALDFDQE+K A ESS LEKSYELPDGNVIVIG+ERFR PEVLFQPS IGKEASG+HDCTFQTIMKCDVDIRKDLY NIVLSGGTTM+PG+GERMTKE++ALAP+TMK+KVVAPPERKYSVWIGGSILSSLSTFQ MWISKAEYDESGPSIVHRKCF
Sbjct:    1 MADEDVQALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPKHLGIMVGMDQKDAYVGDEAQSKRGVLTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANRERMTQIMFETFNVPAMYVNIQAVLSLYASGRTTGCVLDSGDGVSHTVPIYEGYALPHAIVRLDLAGRDLTDYMMKILTERGYSFTTTAEREIVRDIKEKLTYIALDFDQEMKTAAESSGLEKSYELPDGNVIVIGNERFRTPEVLFQPSLIGKEASGIHDCTFQTIMKCDVDIRKDLYCNIVLSGGTTMYPGVGERMTKELTALAPSTMKIKVVAPPERKYSVWIGGSILSSLSTFQQMWISKAEYDESGPSIVHRKCF 376

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BLAST of NO03G02590 vs. NCBI_GenBank
Match: XP_009036992.1 (actin A [Aureococcus anophagefferens] >EGB08263.1 actin A [Aureococcus anophagefferens])

HSP 1 Score: 734.9 bits (1896), Expect = 1.200e-208
Identity = 354/376 (94.15%), Postives = 370/376 (98.40%), Query Frame = 0

Query:    3 EEDVQALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPKHPGIMVGMDQKDAYVGDEAQSKRGVLTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPMNPKANRERMTQIMFETFNVPAMYVNIQAVLSLYASGRTTGCVLDSGDGVSHTVPIYEGYALPHAIVRLDLAGRDLTEYLMKILTERGYSFTTTAEREIVRDIKEKLTYVALDFDQELKVAEESSSLEKSYELPDGNVIVIGSERFRAPEVLFQPSFIGKEASGVHDCT--FQTIMKCDVDIRKDLYSNIVLSGGTTMFPGIGERMTKEISALAPATMKVKVVAPPERKYSVWIGGSILSSLSTFQSMWISKAEYDESGPSIVHRKCF 377
            +EDVQALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPKHPGIMVGMDQKDAYVGDEAQSKRGVLTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP+NPKANRERMTQIMFETFNVPAMYVNIQAVLSLYASGRTTGCVLDSGDGVSHTVPIYEGYALPHAIVRLDLAGRDLT+Y+MKILTERGYSFTTTAEREIVRDIKEKLTY+ALDFDQE+K A ESS+LEKSYELPDGNVIVIG+ERFR PEVLFQPSFIGKEASG+HDCT  FQTIMKCDVDIRKDLY NIVLSGGTTMFPG+GERMTKE++ALAP+TMK+KVVAPPERKYSVWIGGSILSSLSTFQSMWISKAEYDESGP+IVHRKCF
Sbjct:    5 DEDVQALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPKHPGIMVGMDQKDAYVGDEAQSKRGVLTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANRERMTQIMFETFNVPAMYVNIQAVLSLYASGRTTGCVLDSGDGVSHTVPIYEGYALPHAIVRLDLAGRDLTDYMMKILTERGYSFTTTAEREIVRDIKEKLTYIALDFDQEMKTAAESSALEKSYELPDGNVIVIGNERFRCPEVLFQPSFIGKEASGIHDCTFQFQTIMKCDVDIRKDLYCNIVLSGGTTMFPGVGERMTKELTALAPSTMKIKVVAPPERKYSVWIGGSILSSLSTFQSMWISKAEYDESGPAIVHRKCF 380

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BLAST of NO03G02590 vs. NCBI_GenBank
Match: XP_008613070.1 (actin [Saprolegnia diclina VS20] >XP_012204798.1 actin [Saprolegnia parasitica CBS 223.65] >EQC33430.1 actin [Saprolegnia diclina VS20] >KDO24536.1 actin [Saprolegnia parasitica CBS 223.65] >OQR92716.1 actin-like protein [Achlya hypogyna])

HSP 1 Score: 734.9 bits (1896), Expect = 1.200e-208
Identity = 352/376 (93.62%), Postives = 368/376 (97.87%), Query Frame = 0

Query:    1 MAEEDVQALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPKHPGIMVGMDQKDAYVGDEAQSKRGVLTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPMNPKANRERMTQIMFETFNVPAMYVNIQAVLSLYASGRTTGCVLDSGDGVSHTVPIYEGYALPHAIVRLDLAGRDLTEYLMKILTERGYSFTTTAEREIVRDIKEKLTYVALDFDQELKVAEESSSLEKSYELPDGNVIVIGSERFRAPEVLFQPSFIGKEASGVHDCTFQTIMKCDVDIRKDLYSNIVLSGGTTMFPGIGERMTKEISALAPATMKVKVVAPPERKYSVWIGGSILSSLSTFQSMWISKAEYDESGPSIVHRKCF 377
            MA++DVQALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPKHPGIMVGMDQKDAYVGDEAQSKRGVLTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP+NPKANRERMTQIMFETFNVPAMYVNIQAVLSLYASGRTTGCVLDSGDGVSHTVPIYEGYALPHAIVRLDLAGRDLT+Y+MKILTERGYSFTTTAEREIVRDIKEKLTY+ALDFDQE+K A ESS LEKSYELPDGNVIVIG+ERFR PEVLFQP+ IGKEASG+HDCTFQTIMKCDVDIRKDLY NIVLSGGTTM+PGI ERMTKE++ALAP+TMK+KVVAPPERKYSVWIGGSILSSLSTFQ MWISKAEYDESGPSIVHRKCF
Sbjct:    1 MADDDVQALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPKHPGIMVGMDQKDAYVGDEAQSKRGVLTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANRERMTQIMFETFNVPAMYVNIQAVLSLYASGRTTGCVLDSGDGVSHTVPIYEGYALPHAIVRLDLAGRDLTDYMMKILTERGYSFTTTAEREIVRDIKEKLTYIALDFDQEMKTAAESSGLEKSYELPDGNVIVIGNERFRTPEVLFQPALIGKEASGIHDCTFQTIMKCDVDIRKDLYCNIVLSGGTTMYPGISERMTKELTALAPSTMKIKVVAPPERKYSVWIGGSILSSLSTFQQMWISKAEYDESGPSIVHRKCF 376

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BLAST of NO03G02590 vs. NCBI_GenBank
Match: GAX93305.1 (actin-like protein [Pythium insidiosum])

HSP 1 Score: 734.9 bits (1896), Expect = 1.200e-208
Identity = 354/376 (94.15%), Postives = 368/376 (97.87%), Query Frame = 0

Query:    1 MAEEDVQALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPKHPGIMVGMDQKDAYVGDEAQSKRGVLTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPMNPKANRERMTQIMFETFNVPAMYVNIQAVLSLYASGRTTGCVLDSGDGVSHTVPIYEGYALPHAIVRLDLAGRDLTEYLMKILTERGYSFTTTAEREIVRDIKEKLTYVALDFDQELKVAEESSSLEKSYELPDGNVIVIGSERFRAPEVLFQPSFIGKEASGVHDCTFQTIMKCDVDIRKDLYSNIVLSGGTTMFPGIGERMTKEISALAPATMKVKVVAPPERKYSVWIGGSILSSLSTFQSMWISKAEYDESGPSIVHRKCF 377
            MA++DVQALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPKH GIMVGMDQKDAYVGDEAQSKRGVLTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP+NPKANRERMTQIMFETFNVPAMYVNIQAVLSLYASGRTTGCVLDSGDGVSHTVPIYEGYALPHAIVRLDLAGRDLT+Y+MKILTERGYSFTTTAEREIVRDIKEKLTYVALD+DQE+K A ESS LEKSYELPDGNVIVIG+ERFR PEVLFQPS IGKEASG+HDCTFQTIMKCDVDIRKDLY NIVLSGGTTMFPGIGERMTKE++ALAP+TMK+KVVAPPERKYSVWIGGSILSSLSTFQ MWISKAEYDESGPSIVHRKCF
Sbjct:    1 MADDDVQALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPKHLGIMVGMDQKDAYVGDEAQSKRGVLTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANRERMTQIMFETFNVPAMYVNIQAVLSLYASGRTTGCVLDSGDGVSHTVPIYEGYALPHAIVRLDLAGRDLTDYMMKILTERGYSFTTTAEREIVRDIKEKLTYVALDYDQEMKTAAESSGLEKSYELPDGNVIVIGNERFRTPEVLFQPSMIGKEASGIHDCTFQTIMKCDVDIRKDLYCNIVLSGGTTMFPGIGERMTKELTALAPSTMKIKVVAPPERKYSVWIGGSILSSLSTFQQMWISKAEYDESGPSIVHRKCF 376

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BLAST of NO03G02590 vs. NCBI_GenBank
Match: XP_009038528.1 (actin A [Aureococcus anophagefferens] >EGB06780.1 actin A [Aureococcus anophagefferens])

HSP 1 Score: 734.6 bits (1895), Expect = 1.600e-208
Identity = 353/376 (93.88%), Postives = 370/376 (98.40%), Query Frame = 0

Query:    3 EEDVQALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPKHPGIMVGMDQKDAYVGDEAQSKRGVLTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPMNPKANRERMTQIMFETFNVPAMYVNIQAVLSLYASGRTTGCVLDSGDGVSHTVPIYEGYALPHAIVRLDLAGRDLTEYLMKILTERGYSFTTTAEREIVRDIKEKLTYVALDFDQELKVAEESSSLEKSYELPDGNVIVIGSERFRAPEVLFQPSFIGKEASGVHDCT--FQTIMKCDVDIRKDLYSNIVLSGGTTMFPGIGERMTKEISALAPATMKVKVVAPPERKYSVWIGGSILSSLSTFQSMWISKAEYDESGPSIVHRKCF 377
            +EDVQALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPKHPGIMVGMDQKDAYVGDEAQSKRGVLTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP+NPKANRERMTQIMFETFNVPAMYVNIQAVLSLYASGRTTGCVLDSGDGVSHTVPIYEGYALPHAIVRLDLAGRDLT+Y+MKILTERGYSFTTTAEREIVRDIKEKLTY+ALDFDQE+K A ESS+LEKSYELPDGNVIVIG+ERFR PEVLFQPSFIGKEASG+HDCT  FQTIMKCDVDIRKDLY NIVLSGGTTMFPG+GERMTKE++ALAP+TMK+KV+APPERKYSVWIGGSILSSLSTFQSMWISKAEYDESGP+IVHRKCF
Sbjct:    5 DEDVQALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPKHPGIMVGMDQKDAYVGDEAQSKRGVLTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANRERMTQIMFETFNVPAMYVNIQAVLSLYASGRTTGCVLDSGDGVSHTVPIYEGYALPHAIVRLDLAGRDLTDYMMKILTERGYSFTTTAEREIVRDIKEKLTYIALDFDQEMKTAAESSALEKSYELPDGNVIVIGNERFRCPEVLFQPSFIGKEASGIHDCTFQFQTIMKCDVDIRKDLYCNIVLSGGTTMFPGVGERMTKELTALAPSTMKIKVIAPPERKYSVWIGGSILSSLSTFQSMWISKAEYDESGPAIVHRKCF 380

[Close]

BLAST of NO03G02590 vs. NCBI_GenBank
Match: XP_002898284.1 (actin-like protein [Phytophthora infestans T30-4] >ABG78274.1 actin, partial [Phytophthora melonis] >EEY63399.1 actin-like protein [Phytophthora infestans T30-4])

HSP 1 Score: 734.6 bits (1895), Expect = 1.600e-208
Identity = 353/376 (93.88%), Postives = 368/376 (97.87%), Query Frame = 0

Query:    1 MAEEDVQALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPKHPGIMVGMDQKDAYVGDEAQSKRGVLTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPMNPKANRERMTQIMFETFNVPAMYVNIQAVLSLYASGRTTGCVLDSGDGVSHTVPIYEGYALPHAIVRLDLAGRDLTEYLMKILTERGYSFTTTAEREIVRDIKEKLTYVALDFDQELKVAEESSSLEKSYELPDGNVIVIGSERFRAPEVLFQPSFIGKEASGVHDCTFQTIMKCDVDIRKDLYSNIVLSGGTTMFPGIGERMTKEISALAPATMKVKVVAPPERKYSVWIGGSILSSLSTFQSMWISKAEYDESGPSIVHRKCF 377
            MA++DVQALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPKH GIMVGMDQKDAYVGDEAQSKRGVLTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP+NPKANRERMTQIMFETFNVPAMYVNIQAVLSLYASGRTTGCVLDSGDGVSHTVPIYEGYALPHAIVRLDLAGRDLT+Y+MKILTERGYSFTTTAEREIVRDIKEKLTY+ALDFDQE+K A ESS LEKSYELPDGNVIVIG+ERFR PEVLFQPS IGKEASG+HDCTFQTIMKCDVDIRKDLY NIVLSGGTTM+PGIGERMTKE++ALAP+TMK+KVVAPPERKYSVWIGGSILSSLSTFQ MWISKAEYDESGPSIVHRKCF
Sbjct:    1 MADDDVQALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPKHLGIMVGMDQKDAYVGDEAQSKRGVLTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANRERMTQIMFETFNVPAMYVNIQAVLSLYASGRTTGCVLDSGDGVSHTVPIYEGYALPHAIVRLDLAGRDLTDYMMKILTERGYSFTTTAEREIVRDIKEKLTYIALDFDQEMKTAAESSGLEKSYELPDGNVIVIGNERFRTPEVLFQPSLIGKEASGIHDCTFQTIMKCDVDIRKDLYCNIVLSGGTTMYPGIGERMTKELTALAPSTMKIKVVAPPERKYSVWIGGSILSSLSTFQQMWISKAEYDESGPSIVHRKCF 376

[Close]

BLAST of NO03G02590 vs. NCBI_GenBank
Match: P26182.1 (RecName: Full=Actin >CAA42559.1 actin [Achlya bisexualis] >ABB17316.1 actin A [Peronospora viciae])

HSP 1 Score: 734.2 bits (1894), Expect = 2.100e-208
Identity = 351/376 (93.35%), Postives = 368/376 (97.87%), Query Frame = 0

Query:    1 MAEEDVQALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPKHPGIMVGMDQKDAYVGDEAQSKRGVLTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPMNPKANRERMTQIMFETFNVPAMYVNIQAVLSLYASGRTTGCVLDSGDGVSHTVPIYEGYALPHAIVRLDLAGRDLTEYLMKILTERGYSFTTTAEREIVRDIKEKLTYVALDFDQELKVAEESSSLEKSYELPDGNVIVIGSERFRAPEVLFQPSFIGKEASGVHDCTFQTIMKCDVDIRKDLYSNIVLSGGTTMFPGIGERMTKEISALAPATMKVKVVAPPERKYSVWIGGSILSSLSTFQSMWISKAEYDESGPSIVHRKCF 377
            MA++DVQALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPKHPGIMVGMDQKDAYVGDEAQSKRGVLTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP+NPKANRERMTQIMFETFNVPAMYVNIQAVLSLYASGRTTGCVLDSGDGVSHTVPIYEGYALPHAIVRLDLAGRDLT+Y+MKILTERGYSFTTTAEREIVRDIKEKLTY+ALDFDQE+K A ESS LEKSYELPDGNV+VIG+ERFR PEVLFQP+ IGKEASG+HDCTFQTIMKCDVDIRKDLY NIVLSGGTTM+PGI ERMTKE++ALAP+TMK+KVVAPPERKYSVWIGGSILSSLSTFQ MWISKAEYDESGPSIVHRKCF
Sbjct:    1 MADDDVQALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPKHPGIMVGMDQKDAYVGDEAQSKRGVLTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANRERMTQIMFETFNVPAMYVNIQAVLSLYASGRTTGCVLDSGDGVSHTVPIYEGYALPHAIVRLDLAGRDLTDYMMKILTERGYSFTTTAEREIVRDIKEKLTYIALDFDQEMKTAAESSGLEKSYELPDGNVLVIGNERFRTPEVLFQPALIGKEASGIHDCTFQTIMKCDVDIRKDLYCNIVLSGGTTMYPGISERMTKELTALAPSTMKIKVVAPPERKYSVWIGGSILSSLSTFQQMWISKAEYDESGPSIVHRKCF 376

The following BLAST results are available for this feature:

BLAST of NO03G02590 vs. NCBI_GenBank

BLAST of NO03G02590 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
XP_005852345.1	3.500e-216	99.20	actin beta/gamma 1, partial [Nannochloropsis gadit...	[more]
XP_009037302.1	1.700e-210	94.92	hypothetical protein AURANDRAFT_37636 [Aureococcus...	[more]
XP_008910655.1	7.100e-209	94.15	actin-1 [Phytophthora parasitica INRA-310] >XP_009...	[more]
AAO92429.1	9.300e-209	93.88	actin A [Phytophthora brassicae]	[more]
XP_009036992.1	1.200e-208	94.15	actin A [Aureococcus anophagefferens] >EGB08263.1 ...	[more]
XP_008613070.1	1.200e-208	93.62	actin [Saprolegnia diclina VS20] >XP_012204798.1 a...	[more]
GAX93305.1	1.200e-208	94.15	actin-like protein [Pythium insidiosum]	[more]
XP_009038528.1	1.600e-208	93.88	actin A [Aureococcus anophagefferens] >EGB06780.1 ...	[more]
XP_002898284.1	1.600e-208	93.88	actin-like protein [Phytophthora infestans T30-4] ...	[more]
P26182.1	2.100e-208	93.35	RecName: Full=Actin >CAA42559.1 actin [Achlya bise...	[more]

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Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL068	nonsL068	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR001	ncniR001	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR000	ncniR000	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR052	ngnoR052	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO03G02590.1	NO03G02590.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|6408	gene_1449	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO03G02590.1	NO03G02590.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO03G02590 ID=NO03G02590|Name=NO03G02590|organism=Nannochloropsis oceanica|type=gene|length=4071bp
GGTCTTGTGATGAGGCCCAACTGTGTTTGTCAAAGGAGGGAAAGGGAAGA
TGTCAGGAGGATGTGAGATCATGCAAGATTCCGGACGCGGTACGCGGACA
GTAGGGGTCGCAGCCATTGCCAGTCATCGCACATGCGATGCTACAAGGAG
GCTAACAGGTGCTCAAGCACGGTGGTGATGTGCATGACAAGAGCGAGGAT
GACGAACTCTCCATGACTACTAGGGAGAAACGCCCATACAGTTAAATCTC
GGTCGCAGTCTATTCTGGAGGGAGAAACGGCAGCTTGTTTGTCTTGCATT
AATTGTAAATCACACGTCATGCGAAGGCTTGCTCAAAAGTTTTCAAAAGA
CACGGACCCCCATGTTGTGTGGATGTGGCTGGCACCTCGTTTCGGGTGGT
CGGGCGTGACGGGCGAAGGGCTGTCGTCAGTTAACGCGTGGGTTTTTGGC
GATGATGAAGGCTCACGAACCACGACTTCGAAGGGTGAAACTCCTCCTAT
CACACCTTTGCTTGCCTCTCTCACGTCTCCCGACTTTGCAAACGACCATC
CCCGAACCTGAGGACCACTCTTGGAGGTACCCGACGCCCGCTTGTCCCGG
GATACTGAAGGCGCTGTATGCTGTAGAATGCTGTAAAAGGTGGCTTCGTT
CGCGGGGCCTTGGGCGCCGGGGAAAGCGTACCATGAACGCGCCCTGTTAA
CATTCGGAGCCTGATGGCATCGCATGTGCGATGACTGGCAATGGCTGCGA
CCCCTACTGTCCGCGTACCGCGTCCGGAATCTTGCATGATCTCACATCCT
CCTGACATCTTCCCTTTCCCTCCTTTGACAAACACAGTTGGGCCTCATCA
CAAGACCCTGTTACCGTAAGCAACGACCACCCACATCATCGACAATGGCG
GAAGAGGACGTGCAAGCGCTGGTCATTGACAATGGCTCTGGCATGTGCAA
GGCTGGGTTTGCGGGCGACGACGCGCCACGGGCAGTGTTCCCGTCCATCG
TGGGGCGGCCTAAGCACCCGGGCATCATGGTTGGGATGGACCAGAAGGAT
GCGTACGTCGGGGACGAGGCGCAGTCGAAGCGCGGCGTGTTGACGCTCAA
ATACCCGATCGAGCACGGTATCGTGACGAACTGGGACGATATGGAGAAGA
TCTGGCACCACACCTTCTACAACGAGCTGCGTGTGGCCCCCGAGGAGCAC
CCAGTGCTGCTGACGGAGGCGCCGATGAACCCCAAGGCAAACCGGGAGCG
TATGACCCAGATTATGTTTGAGACGTTCAACGTGCCGGCGATGTACGTGA
ACATCCAGGCGGTGCTCTCGCTGTACGCCTCGGGGCGGACCACGGGGTGT
GTGCTAGATTCTGGGGACGGCGTGAGCCACACGGTGCCCATCTACGAGGG
GTACGCGTTGCCGCATGCCATCGTGCGCTTGGACCTGGCGGGCCGGGACC
TGACGGAGTACTTGATGAAGATTCTTACGGAGCGGGGATACTCCTTCACT
ACCACGGCGGAGCGGGAGATTGTGCGTGACATCAAGGAGAAGCTGACCTA
CGTGGCGCTGGACTTCGACCAGGAGCTCAAGGTGGCGGAGGAGTCTTCCA
GCTTGGAAAAGAGCTACGAGCTACCGGATGGAAACGTGATCGTGATTGGC
TCGGAGCGCTTCCGGGCGCCTGAGGTGCTCTTCCAGCCGTCCTTCATCGG
GAAGGAGGCCAGCGGCGTGCATGACTGCACGTTCCAGACCATTATGAAGT
GCGACGTGGACATCCGCAAGGATCTTTACTCGAACATCGTCTTGTCTGGT
GGGACAACCATGTTCCCAGGCATCGGGGAGCGCATGACCAAGGAGATCTC
GGCCCTGGCGCCCGCCACCATGAAAGTCAAGGTGGTGGCCCCGCCCGAGC
GCAAGTACAGCGTATGGATCGGCGGCTCCATCCTCTCCTCCCTCTCCACC
TTCCAGAGCATGTGGATCTCTAAGGCCGAGTACGACGAGTCGGGGCCCTC
TATCGTCCACCGCAAGTGCTTTTAATTTTTGGATCAAGGAAGGAGAGGGG
TGTTGATTCTTTTCCTTTTTCGTGTGCCAGTTCGCGATAGCTGAAAGTGT
TTTGTTTGGTTGTGTAGAGCATCACGAAGCTAACAAGAAAAAGGTTGCAT
GGAAGGAAGAAAAGTAGGGGAGGGAAGACAGTGCATAAGTCGTTTCTTTT
TTGGGGGGGGGCATGGGCGGTGTGTCCAAACAGCACGATAGCGATGAGGA
TGGTGTGGGATATCGAAAACGAAGTGGTTTGACTGAAGAGGAGACGGGAC
AAGGAAGACAGAGATGGAACATGTTAAGTGTCGGAGACAAGTCAAGGCAA
GGGTGATATTTGTGTGTACTCTTGTCTTGTTTCGATTTAGCACACATGGA
TATTATTTACTTTTTCCACTGTTTCTTGCTTTTATCTCGCGCACCCTGGT
GTCTTTCCCTTACTCATTCTCGCGCTCCTTTCTCATTTACTCAATCCTGA
AAATGCATCCCATAACTTTAACCAGACACTACACGATCTTCACCGCATAT
CATTTCATAATTCCTAACCCCACCTTCATTCCCTCCCCTCCTTACCATCG
CCTTACCGTCGTTTACTTAGCTTCCTCGAGTACACCAACCTATTAATCGC
TGCTGAGAACCGCTGCAGCAACTCCTCCTCACCCGGCAGCGCCTCCGTCA
ACATGCCCCCTGTCGCGTCTTCTCTCAATATTTTTATTGACTTCGACACG
TTATCCAACTGAATGCACCACCTCCCGGATCCCCTGATTTTCAAATCCTT
CTGGACAAACTGCCATATGATATCAGCCCCAGAGTCGGTCATCGCAACGA
TCGCTGGCTTGGGCGAGTTCAACACCCGGGAAATAGCAAGCGTCGAGAGC
CCCGCCCCAAAGTCATCCTTCAACCAGTCCTGCAACACCGGAAGATCCAC
CCGTTCATTCGCCGCCAGTACCTTCTCGAAAACGGTCACCCCTCCCCTCG
TGTCGAGCCCTGCCAACTGCTGCTCCCAATCCCCCACACAAGGCGCCTGT
CCTTCCAAACTCACCACGCTGAAATCCGCAATGCTCCCCACCACCTCTAC
CGCCCTTACCATCGCCTCAGCCAACGTTGACCTCAACGTAGCCGCATTCG
CGTTTCTGGATAAGGAGCTCCCCAAGGCCAATAAAATATTTTGCTTCGCG
TAAGACTCCTCCACCACAGGCCTCTGCAAAGGCCCACTCACGAAAGGCAA
TGGCTGAGTAGCCTTTCCCCCAACAGTAAAAGGATTAGCCGCGCCAAACA
AACGCGCATGCTGTACAAGCACGATCCGCGAGCCCCCACTTTCTCGACGA
ATGGCCTCCACGGCCTCCTTCGGGTTCACGCCCTTTGCAAAAATATTGAG
TTGCAACCCACCCCCACCGCTTTGCCCCGTCCCTGACGTGTCATTCGCAT
ACGCTGCTACCAGCACCTTGGCCGATTCTGGAATGGCTGCGAGCAAGGTC
GGCAGCGACAAGTAATTGCCTGGATCCGCCCCTACCTCTGCTCCCGGCCC
CTTGTCCAAACTAATAAGAGCCACTGAGGCGCCTGCCAGATCTTCTGCCA
TCACACTTTCCAGATTTTTGTAGGTCACTTGCACGTTGACGGGGAAAGAG
GCAGCTTCGCTATCGCTATCATCTCCTTTGTCTAAAATTGCACGCACGAT
GGCATCCTTATGCATTGTGGCCATCTTAGCCGCCAGTAGCTGGGCCGCCC
CGCTTTGGTACCCCACCACCACGGCGACAGTGCCCGCACTCACGGTGCTG
CTTGCACCGTCTCCTGCCATCATCTCCACGATAGGCTGTCTTACTCGCTG
GGTGGGCCCCGCTGCTGCTGTGGACGAGAAAGCGAATGCTTTGGGATGAA
GAAAGGCCAGGGTGTCTTGCTGCAGCAGCATCAGGAGGAGGGCGAGGGGA
AGGAGGCTAGGAAGGGATCTGGAAGCAAAAAGGGCTCTAAAAGCGCTCAG
CCTTGTGGAGGAAGCCATGCTAATGCTGTTGCGGCTAGCTCTACTGCTTC
TGCTCCTGTCTTTGCTCCTGT

protein sequence of NO03G02590.1

>NO03G02590.1-protein ID=NO03G02590.1-protein|Name=NO03G02590.1|organism=Nannochloropsis oceanica|type=polypeptide|length=377bp
MAEEDVQALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPKHPGIMVGMDQ
KDAYVGDEAQSKRGVLTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE
EHPVLLTEAPMNPKANRERMTQIMFETFNVPAMYVNIQAVLSLYASGRTT
GCVLDSGDGVSHTVPIYEGYALPHAIVRLDLAGRDLTEYLMKILTERGYS
FTTTAEREIVRDIKEKLTYVALDFDQELKVAEESSSLEKSYELPDGNVIV
IGSERFRAPEVLFQPSFIGKEASGVHDCTFQTIMKCDVDIRKDLYSNIVL
SGGTTMFPGIGERMTKEISALAPATMKVKVVAPPERKYSVWIGGSILSSL
STFQSMWISKAEYDESGPSIVHRKCF*

Synonyms

Publications