NO03G02530, NO03G02530 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO03G02530 vs. NCBI_GenBank
Match: XP_009906079.1 (PREDICTED: RNA-binding protein 34 [Picoides pubescens]) HSP 1 Score: 160.2 bits (404), Expect = 1.700e-35 Identity = 97/203 (47.78%), Postives = 129/203 (63.55%), Query Frame = 0 Query: 224 DEAKDRRTIFVGNLPTSINKKRVQSLFKEYGEIESVRFRSMALAGAKVDDHGNQQLVKKVSANKRLLSDTKDTFNAYVVFVKEKAAVAALAVN-KKVVEEKHLRVDRVGNAATRDPKRSVFLGNLPFDAKEDAVRAHVAKGLEGGERDVEGVRLVRDSETLQGKGFGFILLKDRASVAAALRLNESTFLGRKIRVTVCGKRTK 426 DE RRT+FVGNLP S ++ ++SLFKEYG I+SVRFRS+ A A L KK++A K + NAYVVF +E AV AL N +++ H+RVD ++ D KRS+FLGNL +D +DAVR H + + GG V GVR+VRD +T GKGFG++L ++ +V AL+LNES +GRKIRV CGK+ K Sbjct: 141 DETVGRRTVFVGNLPVSCTRQALKSLFKEYGRIKSVRFRSLVPAEA--------TLSKKLAAIKNKVHPNAKFINAYVVFEEECDAVEALKENGREIASGFHIRVDIASKSSLHDNKRSIFLGNLSYDISDDAVREHFS--VCGG---VVGVRIVRDRKTGLGKGFGYVLFENTDAVHLALKLNESNLMGRKIRVKRCGKKWK 330
BLAST of NO03G02530 vs. NCBI_GenBank
Match: XP_002904848.1 (RNA-binding protein, putative [Phytophthora infestans T30-4] >EEY53230.1 RNA-binding protein, putative [Phytophthora infestans T30-4]) HSP 1 Score: 159.1 bits (401), Expect = 3.800e-35 Identity = 100/239 (41.84%), Postives = 141/239 (59.00%), Query Frame = 0 Query: 217 VEEEVGQDEAKDRRTIFVGNLPTSINKKRVQSLFKEYGEIESVRFRSMALAGAKVDDHGNQQLVKKVSANKRLLSDTKDTFNAYVVFVKEKAAVAALAVNKKVVEEKHLRVDRVGNAATRDPKRSVFLGNLPFDAKEDAVRAHVAKGLEGGE--RDVEGVRLVRDSETLQGKGFGFILLKDRASVAAALRLNESTFLGRKIRVTVCGKRTKQRNDDGKPRVKPKHNAKRRLEAAGPRKR 454 V +E+ DE K+RRT+FVGN+ +K ++ F G++ESVR R + +AG V D GNQ+L+ KV ANK++L+ KD NAYV FV+E +A AA+ +N + + +RVDR D +RSVF+GN+PF ++ + K L+ + +E VRL+RD E+ GKGFG++LLK A VA L L R++RV VCGKR K N G+ K K R +AG R R Sbjct: 61 VAKELTPDELKERRTVFVGNVSLDATQKDIKKHFSVCGQVESVRLRHLPIAGCAVGDAGNQKLMMKVCANKKILTTAKDNCNAYVTFVEESSAEAAIKLNGTTLVQMKIRVDRC--EPVIDARRSVFIGNVPFKCTDEQIFQFFLKRLKSDDEPEPIENVRLIRDRESGLGKGFGYLLLKTPALVAKTLTLRNLKMETRELRVQVCGKRFK--NLRGEETTKEKFEGLR--ASAGARAR 293
BLAST of NO03G02530 vs. NCBI_GenBank
Match: XP_019618663.1 (PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 34-like [Branchiostoma belcheri]) HSP 1 Score: 159.1 bits (401), Expect = 3.800e-35 Identity = 115/295 (38.98%), Postives = 158/295 (53.56%), Query Frame = 0 Query: 223 QDEAKDRRTIFVGNLPTSINKKRVQSLFKEYGEIESVRFRSMALAGAKVDDHGNQQLVKKVSANKRLLSDTKDTFNAYVVFVKEKAAVAALAVNKKVV-EEKHLRVDRVGNAATRDPKRSVFLGNLPFDAKEDAVRAHVAKGLEGGERDVEGVRLVRDSETLQGKGFGFILLKDRASVAAALRLNESTFLGRKIRVTVCGKRTKQRNDD---------GKPRVKPKHNAKRRLEAAGPRKRGVSSSSSPSKSSLGDKAKPFFEGRRVSADAGVVNLKKRGRSAPKKSSGRFKNGK 508 +D +D+RT+FVGNLP S KK ++ +F+++GEIESVRFRS+A N + K+V+ ++ + + K N YVVF +E +A AAL N +V H+RVD N+ D K SVF+GNLPFD ++D+V H + + GE VEGVR+VRD ++ GKGFG++L +D ASV A+RLNE F GRKIRV K+ K +N KP +K K K + KSS D KP + G LK+R R+ P G GK Sbjct: 340 RDPERDQRTVFVGNLPVSTTKKELKKMFQKFGEIESVRFRSIA--------QSNPNVSKRVAMMRQEIQEKKKNMNCYVVFTEEASAQAALKRNGTIVGGSHHIRVDLASNSQKFDHKLSVFVGNLPFDVEDDSVYEHFS---QCGE--VEGVRIVRDGKSGLGKGFGYVLFQDSASVGLAIRLNEKPFSGRKIRVKRAVKKEKVKNTSLASGSASKGDKPFLKGKFYQK---------------TDQGFKSSGKDNFKPKDKAMGFKKKQGGKKLKERWRNKPGFKGGLKSRGK 606
BLAST of NO03G02530 vs. NCBI_GenBank
Match: XP_010002860.1 (PREDICTED: RNA-binding protein 34 [Chaetura pelagica]) HSP 1 Score: 158.7 bits (400), Expect = 5.000e-35 Identity = 105/250 (42.00%), Postives = 142/250 (56.80%), Query Frame = 0 Query: 224 DEAKDRRTIFVGNLPTSINKKRVQSLFKEYGEIESVRFRSMALAGAKVDDHGNQQLVKKVSANKRLLSDTKDTFNAYVVFVKEKAAVAALAVN-KKVVEEKHLRVDRVGNAATRDPKRSVFLGNLPFDAKEDAVRAHVAKGLEGGERDVEGVRLVRDSETLQGKGFGFILLKDRASVAAALRLNESTFLGRKIRVTVCGKRTKQRNDDGKPRVKPKHNAKRRLEAAGPRKRGVSSSSSPSKSSLGDKAKP 473 DEA +RRT+FVGNLP S + ++SLFKEYG+I+S+RFRS+ A V KK++A K + NAYVVF +E A+ AL N ++ H+RVD ++ D KRSVFLGNL +D +DAVR H + DV VR+VRD ET G+GFG++L ++ +V AL+LNE+ LGRKIRV CG++ K P PK A RL+ + S S +G+KA P Sbjct: 106 DEAVNRRTVFVGNLPVSCTVQELKSLFKEYGQIKSIRFRSLVPAEDTVS--------KKLAAIKHKVHPNAKFVNAYVVFKEESDAIKALNENGTEIASGFHIRVDIASKNSSHDNKRSVFLGNLSYDISDDAVREHFSVC-----GDVVAVRVVRDRETGLGRGFGYVLFENTDAVHLALKLNETVLLGRKIRVKRCGEKWKVPQKSSNPSPAPKDRAGTRLK----------NKRCSSDSFVGEKATP 332
BLAST of NO03G02530 vs. NCBI_GenBank
Match: ETI32376.1 (hypothetical protein F443_20803 [Phytophthora parasitica P1569]) HSP 1 Score: 156.8 bits (395), Expect = 1.900e-34 Identity = 100/232 (43.10%), Postives = 138/232 (59.48%), Query Frame = 0 Query: 224 DEAKDRRTIFVGNLPTSINKKRVQSLFKEYGEIESVRFRSMALAGAKVDDHGNQQLVKKVSANKRLLSDTKDTFNAYVVFVKEKAAVAALAVNKKVVEEKHLRVDRVGNAATRDPKRSVFLGNLPFDAKEDAVRAHVAKGLEGGE--RDVEGVRLVRDSETLQGKGFGFILLKDRASVAAALRLNESTFLGRKIRVTVCGKRTKQRNDDGKPRVKPKHNAKRRLEAAGPRKR 454 D+ K RRT+FVGN+ ++K +++ F G++ESVR R + +AG V GNQ+L+ KV ANK++L+ KD NAYV FV+E + AAL +N + +K +RVDR + D +RSVF+GN+PF ++ + +K L E VE VRL+RD E+ GKGFG+ILLK A VA L L R++RV VCGKR K N G+ K K R +AG R R Sbjct: 152 DDLKARRTVFVGNVSLDASQKDIKNHFSVCGKVESVRLRHLPIAGCAVGQAGNQKLMMKVCANKKILTTAKDNCNAYVTFVEESSVEAALKLNGTTLVQKKIRVDR--SEPVIDARRSVFIGNVPFKCTDEQMLQFFSKRLRSDEEPEPVENVRLIRDRESGLGKGFGYILLKTPALVAKTLTLRNLKMETRELRVQVCGKRFK--NLRGEETEKEKFEGLR--ASAGARAR 377
BLAST of NO03G02530 vs. NCBI_GenBank
Match: XP_008898089.1 (hypothetical protein PPTG_06080 [Phytophthora parasitica INRA-310] >ETK72752.1 hypothetical protein L915_20215 [Phytophthora parasitica] >ETL26206.1 hypothetical protein L916_20082 [Phytophthora parasitica] >ETN17017.1 hypothetical protein PPTG_06080 [Phytophthora parasitica INRA-310] >ETP02239.1 hypothetical protein F441_20664 [Phytophthora parasitica CJ01A1]) HSP 1 Score: 156.0 bits (393), Expect = 3.200e-34 Identity = 99/230 (43.04%), Postives = 137/230 (59.57%), Query Frame = 0 Query: 224 DEAKDRRTIFVGNLPTSINKKRVQSLFKEYGEIESVRFRSMALAGAKVDDHGNQQLVKKVSANKRLLSDTKDTFNAYVVFVKEKAAVAALAVNKKVVEEKHLRVDRVGNAATRDPKRSVFLGNLPFDAKEDAVRAHVAKGLEGGE--RDVEGVRLVRDSETLQGKGFGFILLKDRASVAAALRLNESTFLGRKIRVTVCGKRTKQRNDDGKPRVKPKHNAKRRLEAAGPR 452 D+ K RRT+FVGN+ ++K +++ F G++ESVR R + +AG V GNQ+L+ KV ANK++L+ KD NAYV FV+E + AAL +N + +K +RVDR + D +RSVF+GN+PF ++ + +K L E VE VRL+RD E+ GKGFG+ILLK A VA L L R++RV VCGKR K N G+ K K R +AG R Sbjct: 152 DDLKARRTVFVGNVSLDASQKDIKNHFSVCGKVESVRLRHLPIAGCAVGQAGNQKLMMKVCANKKILTTAKDNCNAYVTFVEESSVEAALKLNGTTLVQKKIRVDR--SEPVIDARRSVFIGNVPFKCTDEQMLQFFSKRLRSDEEPEPVENVRLIRDRESGLGKGFGYILLKTPALVAKTLTLRNLKMETRELRVQVCGKRFK--NLRGEETEKEKFEGLR--ASAGAR 375
BLAST of NO03G02530 vs. NCBI_GenBank
Match: ETM32667.1 (hypothetical protein L914_19980 [Phytophthora parasitica] >ETO61108.1 hypothetical protein F444_20821 [Phytophthora parasitica P1976]) HSP 1 Score: 156.0 bits (393), Expect = 3.200e-34 Identity = 99/230 (43.04%), Postives = 137/230 (59.57%), Query Frame = 0 Query: 224 DEAKDRRTIFVGNLPTSINKKRVQSLFKEYGEIESVRFRSMALAGAKVDDHGNQQLVKKVSANKRLLSDTKDTFNAYVVFVKEKAAVAALAVNKKVVEEKHLRVDRVGNAATRDPKRSVFLGNLPFDAKEDAVRAHVAKGLEGGE--RDVEGVRLVRDSETLQGKGFGFILLKDRASVAAALRLNESTFLGRKIRVTVCGKRTKQRNDDGKPRVKPKHNAKRRLEAAGPR 452 D+ K RRT+FVGN+ ++K +++ F G++ESVR R + +AG V GNQ+L+ KV ANK++L+ KD NAYV FV+E + AAL +N + +K +RVDR + D +RSVF+GN+PF ++ + +K L E VE VRL+RD E+ GKGFG+ILLK A VA L L R++RV VCGKR K N G+ K K R +AG R Sbjct: 152 DDLKARRTVFVGNVSLDASQKDIKNHFSVCGKVESVRLRHLPIAGCAVGQAGNQKLMMKVCANKKILTTAKDNCNAYVTFVEESSVEAALKLNGTTLVQKKIRVDR--SEPVIDARRSVFIGNVPFKCTDEQMLQFFSKRLRSDEEPEPVENVRLIRDRESGLGKGFGYILLKTPALVAKTLTLRNLKMETRELRVQVCGKRFK--NLRGEETEKEKFEGLR--ASAGAR 375
BLAST of NO03G02530 vs. NCBI_GenBank
Match: XP_781943.3 (PREDICTED: RNA-binding protein 34 [Strongylocentrotus purpuratus]) HSP 1 Score: 156.0 bits (393), Expect = 3.200e-34 Identity = 103/242 (42.56%), Postives = 139/242 (57.44%), Query Frame = 0 Query: 230 RTIFVGNLPTSINKKRVQSLFKEYGEIESVRFRSMALAGAKVDDHGNQQLVKKVSANKRLLSDTKDTFNAYVVFVKEKAAVAALAVNKKVVEEKHLRVDRVGNAATRDPKRSVFLGNLPFDAKEDAVRAHVAKGLEGGERDVEGVRLVRDSETLQGKGFGFILLKDRASVAAALRLNESTFLGRKIRVTVCGKRTKQRNDDGKPRVKPKHNAKRRLEAAGPRKRGVSSSSSPSKSSLGDKAK 472 RT+FVGNLP +I KK ++ LFK YG IES+RFRSM A + + KKV+A K+ L+ K +FNAY+VF +E+ A AALA N K+V + H+RVD GN D KRS+F+GNL F+ ++AVR H E G VEGVRL+RD T GKGFG++L +D +SV AL+++ + GR +RV K+ K + K A RR + G + P K K K Sbjct: 336 RTVFVGNLPVNITKKELKGLFKIYGAIESMRFRSMGAA--------DPSMSKKVAAIKQELNPKKTSFNAYIVFEEEQCARAALASNGKIVNKHHMRVDIAGNNKKHDMKRSLFVGNLAFNIDDEAVRNHFE---EFG--TVEGVRLIRDKATGVGKGFGYVLFEDSSSVQFALKMDGTKLNGRPLRVKRAVKKEKXXXXXXHSNTRSK-IAHRRSNSKSRPGSGAQGQAGPRKPPFKGKVK 563
BLAST of NO03G02530 vs. NCBI_GenBank
Match: KUF96792.1 (Trafficking protein particle complex subunit 12 [Phytophthora nicotianae]) HSP 1 Score: 156.0 bits (393), Expect = 3.200e-34 Identity = 99/230 (43.04%), Postives = 137/230 (59.57%), Query Frame = 0 Query: 224 DEAKDRRTIFVGNLPTSINKKRVQSLFKEYGEIESVRFRSMALAGAKVDDHGNQQLVKKVSANKRLLSDTKDTFNAYVVFVKEKAAVAALAVNKKVVEEKHLRVDRVGNAATRDPKRSVFLGNLPFDAKEDAVRAHVAKGLEGGE--RDVEGVRLVRDSETLQGKGFGFILLKDRASVAAALRLNESTFLGRKIRVTVCGKRTKQRNDDGKPRVKPKHNAKRRLEAAGPR 452 D+ K RRT+FVGN+ ++K +++ F G++ESVR R + +AG V GNQ+L+ KV ANK++L+ KD NAYV FV+E + AAL +N + +K +RVDR + D +RSVF+GN+PF ++ + +K L E VE VRL+RD E+ GKGFG+ILLK A VA L L R++RV VCGKR K N G+ K K R +AG R Sbjct: 445 DDLKARRTVFVGNVSLDASQKDIKNHFSVCGKVESVRLRHLPIAGCAVGQAGNQKLMMKVCANKKILTTAKDNCNAYVTFVEESSVEAALKLNGTTLVQKKIRVDR--SEPVIDARRSVFIGNVPFKCTDEQMLQFFSKRLRSDEEPEPVENVRLIRDRESGLGKGFGYILLKTPALVAKTLTLRNLKMETRELRVQVCGKRFK--NLRGEETEKEKFEGLR--ASAGAR 668
BLAST of NO03G02530 vs. NCBI_GenBank
Match: ETL79411.1 (hypothetical protein L917_19952 [Phytophthora parasitica]) HSP 1 Score: 155.2 bits (391), Expect = 5.500e-34 Identity = 98/230 (42.61%), Postives = 137/230 (59.57%), Query Frame = 0 Query: 224 DEAKDRRTIFVGNLPTSINKKRVQSLFKEYGEIESVRFRSMALAGAKVDDHGNQQLVKKVSANKRLLSDTKDTFNAYVVFVKEKAAVAALAVNKKVVEEKHLRVDRVGNAATRDPKRSVFLGNLPFDAKEDAVRAHVAKGLEGGE--RDVEGVRLVRDSETLQGKGFGFILLKDRASVAAALRLNESTFLGRKIRVTVCGKRTKQRNDDGKPRVKPKHNAKRRLEAAGPR 452 D+ K RRT+FVGN+ ++K +++ F G++ESVR R + +AG V GNQ+L+ KV ANK++L+ KD NAYV FV+E + AAL +N + +K +RVDR + D +RSVF+GN+PF ++ + +K L E VE VRL+RD E+ GKGFG++LLK A VA L L R++RV VCGKR K N G+ K K R +AG R Sbjct: 152 DDLKARRTVFVGNVSLDASQKDIKNHFSVCGKVESVRLRHLPIAGCAVGQAGNQKLMMKVCANKKILTTAKDNCNAYVTFVEESSVEAALKLNGTTLVQKKIRVDR--SEPVIDARRSVFIGNVPFKCTDEQMLQFFSKRLRSDEEPEPVENVRLIRDRESGLGKGFGYLLLKTPALVAKTLTLRNLKMETRELRVQVCGKRFK--NLRGEETEKEKFEGLR--ASAGAR 375 The following BLAST results are available for this feature:
BLAST of NO03G02530 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO03G02530 ID=NO03G02530|Name=NO03G02530|organism=Nannochloropsis oceanica|type=gene|length=3592bpback to top protein sequence of NO03G02530.1 >NO03G02530.1-protein ID=NO03G02530.1-protein|Name=NO03G02530.1|organism=Nannochloropsis oceanica|type=polypeptide|length=523bpback to top Synonyms
Publications
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