NO03G02530, NO03G02530 (gene) Nannochloropsis oceanica

Overview
NameNO03G02530
Unique NameNO03G02530
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3592
Alignment locationchr3:725778..729369 -

Link to JBrowse

Properties
Property NameValue
DescriptionRna binding protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:725778..729369 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0003723RNA binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR000504RRM_dom
Homology
BLAST of NO03G02530 vs. NCBI_GenBank
Match: EWM29699.1 (rna binding protein [Nannochloropsis gaditana])

HSP 1 Score: 318.5 bits (815), Expect = 3.700e-83
Identity = 229/540 (42.41%), Postives = 276/540 (51.11%), Query Frame = 0
Query:    1 MTFTSYTPGSISSFLQDTAEVQVKPATVLAXXXXXXXXXXXXXXXXXXXXXXTVNSANASLFSETALAKFAPVEPLPG---SIVQSERRRKTRXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGSL----SIRDGAFTSKEEFSVINNIKEAKRTKKQGLPVVGAPVVIMEKDKGAVTASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADWK-----------DEEGPQEEVEEEVGQDEAKDRRTIFVGNLPTSINKKRVQSLFKEYGEIESVRFRSMALAGAKVDDHGNQQLVKKVSANKRLLSDTKDTFNAYVVFVKEKAAVAALAVNKKVVEEKHLRVDRVGNAATRDPKRSVFLGNLPFDAKEDAVRAHVAKGLEGGERDVEGVRLVRDSETLQGKGFGFILLKDRASVAAALRLNESTFLGRKIRVTVCGKRTKQRNDDGKPRVKPKHNAKRRLEAAGPRKRGVSSSSSPSKSSLGDKAKPFFEGRRVSADAGVVNLKKRGRSAPKKSSGRFKNGKKGVGAGAGGKKKGKK 523
            M   SY PG I SFL+   E   +P++  A                          +++S+FSE   AKF PV+PLPG    +   +RRRKT+                            T  S+    S  D   T   +    N          +G  V   P ++ E                                        A WK           D  G   E E ++ +++AK+RRTIFVGNLPTSI+KKRVQ++FKEYGEIESVRFRSMALAGAK+DDHGNQ+L KKVSANKRLLSD KDTFNAYVVF++E +A AA+A N ++VE KHLRVDRVG+   RDPKRSVFLGNLPFDAKED +RAHVA+ LEGG  DVEGVRLVRD ET QGKGFGF+LLKD+ASVAAALRLN ++F GRKIRVT C                                        P   +  +  K  FEGRR S   G +++KKRG    KKS G      KG  A  GG+KK  K
Sbjct:    1 MPCRSYKPGDILSFLRTDVE---QPSSPSASAQGGSIVKGSKKRKHQAGAPSKSTQSSSSIFSEATQAKFVPVQPLPGLNMDLNNIKRRRKTKKGKERPIRPSKKEKAAAYRAGEGEMVGSTAPSVESTYSAPDNETTKPMKTLSTNFALSQNEEAGRGEDVTSLPPLVRE-----------------------------------HVPRDAHWKQGTENKKSRRDDTGGINFEAEVDIDKEKAKERRTIFVGNLPTSISKKRVQNIFKEYGEIESVRFRSMALAGAKIDDHGNQRLAKKVSANKRLLSDAKDTFNAYVVFLREDSAEAAIAANNRLVEAKHLRVDRVGSETIRDPKRSVFLGNLPFDAKEDTIRAHVAQELEGGPGDVEGVRLVRDPETQQGKGFGFVLLKDKASVAAALRLNGTSFQGRKIRVTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPQFP-PGARPEIIKASFEGRRASDTFGRLSVKKRGSGPAKKSKG----ASKGNRARKGGQKKTNK 497          
BLAST of NO03G02530 vs. NCBI_GenBank
Match: CBN78849.2 (white-brown-complex ABC transporter family (Partial), partial [Ectocarpus siliculosus])

HSP 1 Score: 194.9 bits (494), Expect = 6.300e-46
Identity = 111/205 (54.15%), Postives = 135/205 (65.85%), Query Frame = 0
Query:  230 RTIFVGNLPTSINKKRVQSLFKEYGEIESVRFRSMALAGAKVDDHGNQQLVKKVSANKRLL-SDTKDTFNAYVVFVKEKAAVAALAVNKKVVEEKHLRVDRVGNAATRDPKRSVFLGNLPFDAKEDAVRAHVAKGLEGGERDVEGVRLVRDSETLQGKGFGFILLKDRASVAAALRLNESTFLGRKIRVTVCGKRTKQRNDDGKP 434
            RT+FVGNLPTS   K+V++ FKEYG +ESVR RS+A+ G  VD  G+QQLV+KV  N+ ++  + K + NAYVV+    +   ALA N   V  KH+RVDR   +   D  RSVFLGNLP DA E+ VR   A  LEGG + VEGVRLVRD  TL GKGFG++LL DRA  AAAL L  +   GR +RV  CGKRTK R    KP
Sbjct:  330 RTVFVGNLPTSFTPKKVKAAFKEYGAVESVRLRSVAVQGMAVDKAGDQQLVRKVCVNRGMVDEEVKSSVNAYVVYKDCASVEKALAANGTDVGGKHVRVDR-AKSGEYDHTRSVFLGNLPMDAGEEEVRELFASKLEGGPKSVEGVRLVRDKATLVGKGFGYVLLADRALAAAALALQGTKLKGRPLRVMPCGKRTKGRGGVAKP 533          
BLAST of NO03G02530 vs. NCBI_GenBank
Match: OQS04672.1 (hypothetical protein THRCLA_03115 [Thraustotheca clavata])

HSP 1 Score: 178.3 bits (451), Expect = 6.100e-41
Identity = 110/258 (42.64%), Postives = 149/258 (57.75%), Query Frame = 0
Query:  213 PQEEVEEEVGQDEAKD---RRTIFVGNLPTSINKKRVQSLFKEYGEIESVRFRSMALAGAKVDDHGNQQLVKKVSANKRLLSDTKDTFNAYVVFVKEKAAVAALAVNKKVVEEKHLRVDRVGNAATRDPKRSVFLGNLPFDAKEDAVRAHVAKGLEGGERD-----VEGVRLVRDSETLQGKGFGFILLKDRASVAAALRLNESTFLGRKIRVTVCGKRTKQRNDDGKP------RVKPKHNA------KRRLEAAGP 451
            P+ + EE   +DEA D    RTIFVGN+        ++  F   G++ES R RS+ +AG  VD +G Q LVKKV ANK++  + +D  NAYVVF  E++   ALA+N     EK +RVDR     T+DPKR+VF+GN+ F A ED +R H    +E  + D     VE VR++RD E+  GKGF ++LLKD  +   AL+L+ S    R++RV+VCGKR K  N +GK       R KP   A      KR+LE   P
Sbjct:  780 PEVKTEENAKEDEADDERAHRTIFVGNVSLDATVDDLKKFFSSCGKVESARLRSLPVAGCAVDQNGKQNLVKKVCANKKIFVEGRDNCNAYVVFASEESIEKALALNGSEFHEKFIRVDR--KVMTKDPKRTVFVGNVAFTATEDEIRNHFEANIEKDDEDEGSNLVESVRIIRDKESHLGKGFCYVLLKDVPTATKALKLDGSKIGKRELRVSVCGKRFKSTNAEGKARSFEGRRAKPAPGAQMRVLKKRKLEGGSP 1035          
BLAST of NO03G02530 vs. NCBI_GenBank
Match: XP_012197753.1 (hypothetical protein SPRG_19497 [Saprolegnia parasitica CBS 223.65] >KDO31537.1 hypothetical protein SPRG_19497 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 177.9 bits (450), Expect = 7.900e-41
Identity = 119/282 (42.20%), Postives = 160/282 (56.74%), Query Frame = 0
Query:  208 KDEEGPQEEVEEEVGQDEAKDRRTIFVGNLPTSINKKRVQSLFKEYGEIESVRFRSMALAGAKVDDHGNQQLVKKVSANKRLLSDTKDTFNAYVVFVKEKAAVAALAVNKKVVEEKHLRVDRVGNAATRDPKRSVFLGNLPFDAKEDAVRAHVAKGLEGGERD-----VEGVRLVRDSETLQGKGFGFILLKDRASVAAALRLNESTFLGRKIRVTVCGKRTKQRNDD--GKP----RVKPKHNAKRRLEAAGPRKRGVSSSSSPSKSSLGDKAKPFFEGRR 479
            K E  P+EE      +D+ K  RTIFVGN+      + ++  F   G++ES R RS+ +AG  VD HG Q LVKKV ANK+L  + +D  NAYVVF  E +  AALA+N     EK +RVDR     T DPKR+VF+GN+ F A ED +R H    LE  + D     VE VR++RD +T  GKGFG++LLKD  + A AL+L+ S    R++RV+VCGKR K    D   +P    R KP   A+ R+     +KR +   SS          KP F+G++
Sbjct:  106 KVEVAPKEE------EDDEKAPRTIFVGNVSLEATAEELKKFFSSCGKVESARLRSVPVAGCAVDQHGKQNLVKKVCANKKLFVEGRDNCNAYVVFASEDSIAAALALNGADFHEKKIRVDR--KVLTTDPKRTVFVGNMAFTATEDEIRNHFESNLEKDDEDEGSALVESVRIIRDKDTHLGKGFGYVLLKDVTTAAKALKLDGSKIGKRELRVSVCGKRFKTTATDKTARPFEGRRAKPAPGAQMRV----MKKRKLDGDSSKP----AFVKKPKFDGKK 371          
BLAST of NO03G02530 vs. NCBI_GenBank
Match: XP_008609225.1 (hypothetical protein SDRG_05290 [Saprolegnia diclina VS20] >EQC37063.1 hypothetical protein SDRG_05290 [Saprolegnia diclina VS20])

HSP 1 Score: 177.6 bits (449), Expect = 1.000e-40
Identity = 114/272 (41.91%), Postives = 152/272 (55.88%), Query Frame = 0
Query:  208 KDEEGPQEEVEEEVGQDEAKDRRTIFVGNLPTSINKKRVQSLFKEYGEIESVRFRSMALAGAKVDDHGNQQLVKKVSANKRLLSDTKDTFNAYVVFVKEKAAVAALAVNKKVVEEKHLRVDRVGNAATRDPKRSVFLGNLPFDAKEDAVRAHVAKGLEGGERD-----VEGVRLVRDSETLQGKGFGFILLKDRASVAAALRLNESTFLGRKIRVTVCGKRTKQRNDDGKPRVKPKHNAKRRLEAAGPRKRGVSSSSSPSKSSLGDKAKPFF 475
            K E  P+EE      +D+ K  RTIFVGN+      + ++  F   G++ES R RS+ +AG  +D HG Q LVKKV ANK+L  + +D  NAYVVF  E +  AALA+N     EK +RVDR     T DPKR+VF+GN+ F A ED +R H    LE  + D     VE VR++RD +T  GKGFG++LLKD  + A AL+L+ S    R++RV+VCGKR K    D   R       +R   A G + R +       +   GD  KP F
Sbjct:  107 KVEAAPKEE------EDDEKAPRTIFVGNVSLEATAEELKKFFSSCGKVESARLRSVPVAGCAIDQHGKQNLVKKVCANKKLFVEGRDNCNAYVVFASEDSIAAALALNGAEFHEKKIRVDR--KVLTTDPKRTVFVGNMAFAATEDEIRNHFESNLEKDDEDEGSALVESVRIIRDKDTHLGKGFGYVLLKDVTTAAKALKLDGSKIGKRELRVSVCGKRFKTTATDKTAR---PFEGRRAKPAPGAQMRVMK-----KRKLDGDNGKPAF 362          
BLAST of NO03G02530 vs. NCBI_GenBank
Match: OQR95989.1 (RNA-binding protein [Achlya hypogyna])

HSP 1 Score: 172.2 bits (435), Expect = 4.300e-39
Identity = 109/250 (43.60%), Postives = 140/250 (56.00%), Query Frame = 0
Query:  227 KDRRTIFVGNLPTSINKKRVQSLFKEYGEIESVRFRSMALAGAKVDDHGNQQLVKKVSANKRLLSDTKDTFNAYVVFVKEKAAVAALAVNKKVVEEKHLRVDRVGNAATRDPKRSVFLGNLPFDAKEDAVRAHVAKGLEGGERD-----VEGVRLVRDSETLQGKGFGFILLKDRASVAAALRLNESTFLGRKIRVTVCGKRTKQRNDDGKPRVKPKHNAKRRLEAAGPRKRGVSSSSSPSKSSLGDKAK 472
            K  RTIFVGN+      + ++  F   G++ES R RS+ +AG  VD HG Q LVKKV ANK+L  + +D  NAYVVF  E++   ALA+N     EK LRVDR     T D KR+VF+GN+ F A ED +R H    +E  + D     VE VRL+RD +T  GKGFG++LLKD  +   AL+LN S    R++RV+VCGKR K    D  PR       +R   A G + R V        S    KAK
Sbjct:  123 KAPRTIFVGNVSLEATAEELKKFFSSCGKVESARLRSLPVAGCAVDQHGKQNLVKKVCANKKLFVEGRDNCNAYVVFASEESIEKALALNGAEFHEKKLRVDR--KVPTIDAKRTVFVGNVAFTATEDDLRRHFEANIEKDDEDEGSALVESVRLIRDKDTHLGKGFGYVLLKDVPTATKALKLNGSKIGKRELRVSVCGKRFKSTAADKTPRT---FEGRRAKPAPGAQMRVVKKRKLEEASVGAKKAK 367          
BLAST of NO03G02530 vs. NCBI_GenBank
Match: XP_009833185.1 (hypothetical protein H257_08820 [Aphanomyces astaci] >ETV77398.1 hypothetical protein H257_08820 [Aphanomyces astaci])

HSP 1 Score: 169.1 bits (427), Expect = 3.700e-38
Identity = 111/255 (43.53%), Postives = 147/255 (57.65%), Query Frame = 0
Query:  225 EAKDRRTIFVGNLPTSINKKRVQSLFKEYGEIESVRFRSMALAGAKVDDHGNQQLVKKVSANKRLLSDTKDTFNAYVVFVKEKAAVAALAVNKKVVEEKHLRVDRVGNAATRDPKRSVFLGNLPFDAKEDAVRAHVAKGL--EGGERDVEGVRLVRDSETLQGKGFGFILLKDRASVAAALRLNESTFLGRKIRVTVCGKRTKQRNDDGKPRVK---PKHNAKRRLEAAGPRKRGVSSSSSPSKSSLGDKAKPFF 475
            + KD RTIFVGN+        V+  F   G++ESVR RS+ +AG KVD +G Q LVKKV  NK+L    +D+ NAYVVF  + +  AAL +N      K LRVDR   A + D KRSVF+GNL F+A +D VR+H  K L  +     VE VR++RD  T  GKGFG++L KD ++ A AL L+ S    R++RVTVCGKR K  + D KP +K    + +   +L     RK    +  +P     G K KP F
Sbjct:  233 DVKDPRTIFVGNVSLEATAADVKKFFASCGKVESVRLRSVPVAGCKVDQNGKQNLVKKVCVNKKLFVQGRDSCNAYVVFATDASVDAALKLNGSEFFNKVLRVDR--KAVSMDAKRSVFVGNLAFNATDDDVRSHFDKILREDADTAAVESVRIIRDKVTHLGKGFGYVLFKDLSTAAKALSLHGSKMGKRELRVTVCGKRFKNTHGDKKPELKFEGRRAHPGAQLRLLKKRKAEEPADGAPPSKLPGQK-KPGF 484          
BLAST of NO03G02530 vs. NCBI_GenBank
Match: XP_008874873.1 (hypothetical protein H310_10310 [Aphanomyces invadans] >ETV96610.1 hypothetical protein H310_10310 [Aphanomyces invadans])

HSP 1 Score: 168.7 bits (426), Expect = 4.800e-38
Identity = 112/262 (42.75%), Postives = 150/262 (57.25%), Query Frame = 0
Query:  209 DEEGPQEEVEEEVGQDEAKDRRTIFVGNLPTSINKKRVQSLFKEYGEIESVRFRSMALAGAKVDDHGNQQLVKKVSANKRLLSDTKDTFNAYVVFVKEKAAVAALAVNKKVVEEKHLRVDRVGNAATRDPKRSVFLGNLPFDAKEDAVRAHVAKGL--EGGERDVEGVRLVRDSETLQGKGFGFILLKDRASVAAALRLNESTFLGRKIRVTVCGKRTKQRNDDGKPRVKPKHNAKR---RLEAAGPRKRGVSSSSSPSKSS 466
            DE        ++ G  + KD RTIFVGN+        ++  F   G+++SVR RS+ +AG KVD +G Q LVKKV  NK+L  + +D+ NAYVVFV E +  AAL +N     +K LRVDR     + D KR+VF+GNL F A +D VR H  K L  +     VE VR++RD  T  GKGFG++L KD ++ A AL L+ES    R+IRVTVCGKR K    +  P +K +    R   +L     RK G  + + PSK S
Sbjct:  160 DETASTTAKGDDDGSVDEKDVRTIFVGNVSLEATPNDLKKHFTPCGKVKSVRLRSVPVAGCKVDQNGKQNLVKKVCTNKKLFVEGRDSCNAYVVFVDESSVDAALQLNGSEFFKKCLRVDR--KNVSMDAKRTVFVGNLAFTATDDDVRNHFEKALREDADTPAVESVRIIRDKSTHLGKGFGYVLFKDVSTAAKALSLHESKMGKREIRVTVCGKRFKNTGGEKAPELKFEGRRARPGAQLRMLKKRKAGELTDAPPSKKS 419          
BLAST of NO03G02530 vs. NCBI_GenBank
Match: XP_002180429.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC47837.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 162.9 bits (411), Expect = 2.600e-36
Identity = 107/264 (40.53%), Postives = 155/264 (58.71%), Query Frame = 0
Query:  211 EGPQEEVEEEVGQDEAKDRRTIFVGNLPTSINKKRVQSLFKEYGEIESVRFRSMALAGAKV--DDHGNQQLVKKVSAN-KRLLSDTKDTFNAYVVFVKEKAAVAALAVNKKVVEE------KHLRVDRVGNAATRDPKRSVFLGNLPFDAKEDAVRAHVAKGLEGGERDVEGVRLVRDSETLQGKGFGFILLKDRASVAAAL-RLNESTFLGRKIRVTVCGKRTKQRNDDGKPRVKPKHNAKRRLEAAGPRKRGVSSSSSPSKS 465
            EGP   VE+   + +  + RT+FVGNLPT  N+K +  LFK+ G++ES R RS+A+ G K+  ++ GNQ+LVKKV AN  ++ +  K +   YVVFV + A   AL +N   V++      + +RVD     A  D  RS+F+GNLP+ A ED++  H  +G      D++GVR+VRD ET Q KGFG++L  D++ V  AL R++ S +  R++RV VCG+R K +  D      PK N KR  E      R  S+  SP+ S
Sbjct:   75 EGP--TVEKPSEESKQAEERTVFVGNLPTQYNRKSLAKLFKDCGKVESSRIRSLAVTGVKLPQENAGNQKLVKKVCANTSQVDTKAKSSVQGYVVFVNKDAIEKALVLNNTEVKDERTGTTRRIRVDHAN--AEYDAARSIFVGNLPYTADEDSLAEHFCEGCGLNVDDIQGVRIVRDKETFQCKGFGYVLFSDQSMVTLALQRMSGSLYAKRELRVMVCGRRFKGKKGD----AMPKENKKRSFEG-----RRASAPVSPAAS 325          
BLAST of NO03G02530 vs. NCBI_GenBank
Match: XP_024575257.1 (rna recognition motif-containing family protein [Plasmopara halstedii] >CEG38888.1 rna recognition motif-containing family protein [Plasmopara halstedii])

HSP 1 Score: 161.8 bits (408), Expect = 5.900e-36
Identity = 100/232 (43.10%), Postives = 139/232 (59.91%), Query Frame = 0
Query:  224 DEAKDRRTIFVGNLPTSINKKRVQSLFKEYGEIESVRFRSMALAGAKVDDHGNQQLVKKVSANKRLLSDTKDTFNAYVVFVKEKAAVAALAVNKKVVEEKHLRVDRVGNAATRDPKRSVFLGNLPFDAKEDAVRAHVAKGLEGGE--RDVEGVRLVRDSETLQGKGFGFILLKDRASVAAALRLNESTFLGRKIRVTVCGKRTKQRNDDGKPRVKPKHNAKRRLEAAGPRKR 454
            D+ K RRTIFVGN+     +K ++S F   G++E+VR R + +AG  VD+ GNQ+L+ KV ANK++L+  KD  NAYV F +EK+  AAL +N   +  K +RVDR  +    D +RSVF+GN+PF   ++ +     K L+  E    ++ VRL+RD E+  GKGFG++LLK  A VA  L L       R++RV VCGKR K  N  G+   K KH   R   +AG R R
Sbjct:  137 DDPKARRTIFVGNVSLDATQKDIKSHFSGCGKVENVRLRHLPIAGCAVDEAGNQKLMMKVCANKKILTTAKDNCNAYVTFAEEKSVEAALKLNGSTLANKKIRVDR--SDPVIDARRSVFIGNVPFKCTDEQMLQFFLKRLKTDEEPEPIDNVRLIRDRESGLGKGFGYLLLKTPALVAKTLTLRNLKMESRELRVQVCGKRFK--NLRGEETAKEKHEGLR--ASAGARAR 362          
The following BLAST results are available for this feature:
BLAST of NO03G02530 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM29699.13.700e-8342.41rna binding protein [Nannochloropsis gaditana][more]
CBN78849.26.300e-4654.15white-brown-complex ABC transporter family (Partia... [more]
OQS04672.16.100e-4142.64hypothetical protein THRCLA_03115 [Thraustotheca c... [more]
XP_012197753.17.900e-4142.20hypothetical protein SPRG_19497 [Saprolegnia paras... [more]
XP_008609225.11.000e-4041.91hypothetical protein SDRG_05290 [Saprolegnia dicli... [more]
OQR95989.14.300e-3943.60RNA-binding protein [Achlya hypogyna][more]
XP_009833185.13.700e-3843.53hypothetical protein H257_08820 [Aphanomyces astac... [more]
XP_008874873.14.800e-3842.75hypothetical protein H310_10310 [Aphanomyces invad... [more]
XP_002180429.12.600e-3640.53predicted protein [Phaeodactylum tricornutum CCAP ... [more]
XP_024575257.15.900e-3643.10rna recognition motif-containing family protein [P... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL068nonsL068Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR001ncniR001Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR052ngnoR052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005648NSK005648Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G02530.1NO03G02530.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|521635gene_1441Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100114g14gene941Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G02530.1NO03G02530.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G02530 ID=NO03G02530|Name=NO03G02530|organism=Nannochloropsis oceanica|type=gene|length=3592bp
CTCCCACCTTATATAATCAGCCATAAAGCTAAAATTGTTATTGCCGTACA
CACCGGCACTAGGATCATCCAATGCATATGCCTGCACCGTGTGAGGCAAT
ACCCCCATTTCCGGCCCCGCGTACGACGGGAGGAAATTAAAATTTAACGG
TGTGTCTGTCCGAGGGTCCTGAAAATGCTTACAAAACTGGTTACTCGAAC
AGTGGACCTTGACAGTCGCCTCCTTCCCCCACGTGCCATTCACATGACTC
GCGAACACATTCAGCAACCGCAACATAAGCTTATCATCCGGCGCCGAGAA
CTCGGAAAACCCCGCTTCCGTGCTCAGAAAATCAAAATTAGCACCACCGA
TCAACCAATCCACCCGTTCCATGACCGACGCCACCTGCCATGCCTCGGGT
GCCAACGTCGTCGTCATCACCCACGAGTGCTGCTGCTGGAAGGCAATGGG
ATCATCCACCCCAACCATCAACCCCATCCCCTGTCCCAGACCAGCCAGAA
ACCGCAGCCGGGCTTGCCGTAAGGGTGAAGCTACTAAATCACCCCACCGT
CGGTTACCCAACAAAATCCATTCGATCCGATTCAAGCGATGTGCGACACT
CCATTCAAAAAAACGCGACACATCAGGGACCATTTCTTCCCATAATTCAC
AGTGCTCTCCCCGCGCTATTACTGCTGCACATGCCCATTTCGCTGCCACC
GCGGGTGTTTCACCGGAAGCTTCAGCACTACACTCATCCTCATCACCCTC
CCTCCCTCTCTCCTCGACAAATCCTGTGGCAAGCCATCGTCGCTCTATTC
GATCCAAACCCGCCCATGCATCTTCGACCCTTAGCCGTGCCGCCGTGTCA
ACGCCCCCACGGTCTAAGGACAAGGGAAGGTCAAACCCTTGCAGCACATC
AGTCAATTCCAACGGATGCTGCGTGTGGAGGTGAAAGGTCCTTGACCGCC
ATCGAGGTGCTTCCCACCGCATTGACATGTGACCGTCTTTCTCAGGTAAA
TTTTGTAGCGTGGCCGGGGCAATTGGACCTTCCAATGGGCTCCAGAAAGC
GAATCCTAGGGATTGCAAAAGCTCATACGCCGCAAATGCTGCGCCCGTGT
CCACCTTTGTGCTCGCATTCCAGGCCTTGTCGATTGGAAAGCCATTACCC
GCCATGACCGTGATATCACCGCAGCGCAACGTAAAGACACCAAAGCTCTC
TGCATCCGCCAAATTTTTCTCAGGGGCATCCCTCCATTCGGGGACATACT
CCATCAAGGCATGGTAGGTCGCGCTGTCTCCCAATGAAAGCAGAAGCACG
TCCTCTGCCTTCTTCACGTATTTCCGCCGCTTTCTGCTGCCACTCTTCCC
TGTTACCATCGCCATCAGCTCTGTTGCCACTTCCGTATGATTGTCTCCTT
CAGGGGCTAGCCAAGGCCCAAGGTAATGCGCCATGCGGAGGGGAATCGCA
TGCCCAAGGTTTGCGCCGGCGTCAAGTAGCACCCTTGTCGACGTTGCCGC
GCAGCTGTGGCTCCTGCCCACCAGGCCAAGAAGCGCAAGCCATAGGCTAC
GCATGGCGTGTGCCGCTGTGCATCGTAATGTAGGACGTGTCGGGGCGCAC
ATGGTCAGACAAGCGTGGAATGGATGAGTGCTTGGCCTCGGCGAGAAGCG
CGATGATATTCTATGAGGAAGGCTGGCCAAGAGCCTCCCTTCATGCCATG
CATTGTGACCCATCCGGGCCCGCCGCGATAGCAGCCACATTATTTTGTTA
TGTGCGTGAGATACTTGACTAGCCTGTGCCGCTCTTAGTGGTATCGGAGA
GGCGTGGTGGGTTTACATGTAACCTCCTCACCCCATCCATTCCGCCACCC
ATCGATTCACACAGCAAAAAGCCATGACGTTCACGTCCTACACACCGGGC
TCGATATCGTCCTTTCTCCAGGATACCGCTGAGGTCCAAGTCAAGCCAGC
CACGGTTTTGGCGGCGAGCAGCAAGAAGCGGAAGAAGCCTGATAAGGAGC
CTAGCACGACCACCCCCGCGAGCACATCCACCGTCAACAGCGCCAATGCC
TCCCTCTTTTCCGAGACCGCGTTGGCCAAATTCGCGCCTGTGGAGCCGCT
CCCTGGGTCAATCGTACAGTCAGAGAGAAGACGCAAGACACGGAAGGGCA
AGGAGCGCCCAATTCGGCCCACCAAGAGTGAGAAGGAGGCAGCCCGGTTA
GTAGCAGCTGCAGCAGCAGAAACCGCCACAACAGGTAGCTTAAGTATTCG
GGATGGCGCGTTTACTTCCAAGGAGGAATTTTCGGTTATTAATAATATAA
AGGAAGCAAAAAGGACGAAGAAACAAGGCCTGCCGGTTGTCGGAGCCCCT
GTCGTCATAATGGAGAAAGACAAAGGTGCCGTGACCGCGAGCAACGTCTC
CGCTGCTGCTGCTGCTGCTGCTGCTGCCCCGGCCTCGACTTTGGCCAAGA
AGGATAAGAATGACAACAGAAAGCGGCAGACGGATGCGGATTGGAAGGAT
GAGGAAGGACCGCAGGAGGAGGTGGAGGAGGAGGTGGGCCAGGACGAAGC
CAAGGACCGCCGGACCATTTTTGTGGGCAACTTGCCGACGAGCATCAACA
AAAAGCGGGTGCAGAGCCTCTTTAAAGAGTACGGCGAGATTGgtaagcgc
cgactctattcattttattgactctgctttcatttattctgatgttcgat
gcaatatttttttatatctcactacccctaaatagAATCAGTCCGCTTCC
GTTCGATGGCCCTGGCCGGGGCCAAGGTTGACGACCACGGCAACCAGCAA
CTCGTCAAAAAGGTGTCAGCAAACAAACGTTTATTGAGCGACACGAAGGA
CACCTTTAATGCCTACGTTGTTTTCGTGAAGGAAAAAGCGGCCGTGGCGG
CTTTGGCAGTAAATAAGAAGGTCGTGGAAGAGAAGCACTTGAGGGTGGAT
CGGGTGGGTAACGCCGCGACGCGAGATCCGAAGCGAAGTGTATTTTTGGG
GAATCTTCCTTTTGATGCGAAGGAGGACGCGGTGCGTGCACACGTTGCAA
AGGGTTTGGAGGGCGGGGAGAGAGATGTTGAGGGAGTCCGGTTGGTAAGG
GACTCTGAGACGCTGCAAGGGAAGGGTTTTGGGTTCATTCTTCTCAAGGA
TCGAGCGTCGGTGGCAGCGGCATTGCGATTGAACGAGAGCACATTTTTGG
GACGGAAGATTCGCGTGACTGTTTGCGGGAAGCGAACTAAGCAGAGGAAT
GATGACGGCAAGCCCCGTGTCAAACCCAAGCACAATGCGAAGAGGCGTTT
GGAAGCCGCGGGCCCCAGGAAGAGGGGAGTTTCCTCCTCCTCATCGCCCT
CCAAGAGCTCTTTGGGCGACAAAGCTAAGCCTTTTTTCGAAGGCCGGCGT
GTCTCGGCCGATGCGGGCGTGGTGAACCTGAAAAAGAGGGGACGCTCGGC
GCCTAAAAAGAGTAGTGGGCGGTTTAAGAATGGCAAGAAGGGCGTAGGAG
CTGGAGCGGGAGGCAAGAAGAAGGGCAAAAAGTGAGAATGCAACTCGTTT
GGGCTCGCACAATTTAAAACAAAAGTAAAACAGAATCGAAAG
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protein sequence of NO03G02530.1

>NO03G02530.1-protein ID=NO03G02530.1-protein|Name=NO03G02530.1|organism=Nannochloropsis oceanica|type=polypeptide|length=523bp
MTFTSYTPGSISSFLQDTAEVQVKPATVLAASSKKRKKPDKEPSTTTPAS
TSTVNSANASLFSETALAKFAPVEPLPGSIVQSERRRKTRKGKERPIRPT
KSEKEAARLVAAAAAETATTGSLSIRDGAFTSKEEFSVINNIKEAKRTKK
QGLPVVGAPVVIMEKDKGAVTASNVSAAAAAAAAAPASTLAKKDKNDNRK
RQTDADWKDEEGPQEEVEEEVGQDEAKDRRTIFVGNLPTSINKKRVQSLF
KEYGEIESVRFRSMALAGAKVDDHGNQQLVKKVSANKRLLSDTKDTFNAY
VVFVKEKAAVAALAVNKKVVEEKHLRVDRVGNAATRDPKRSVFLGNLPFD
AKEDAVRAHVAKGLEGGERDVEGVRLVRDSETLQGKGFGFILLKDRASVA
AALRLNESTFLGRKIRVTVCGKRTKQRNDDGKPRVKPKHNAKRRLEAAGP
RKRGVSSSSSPSKSSLGDKAKPFFEGRRVSADAGVVNLKKRGRSAPKKSS
GRFKNGKKGVGAGAGGKKKGKK*
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Synonyms
Publications