NO03G02270, NO03G02270 (gene) Nannochloropsis oceanica

Overview
NameNO03G02270
Unique NameNO03G02270
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2027
Alignment locationchr3:664112..666138 +

Link to JBrowse

Properties
Property NameValue
DescriptionTbc domain-containing protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:664112..666138 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR035969Rab-GTPase_TBC_sf
IPR000195Rab-GTPase-TBC_dom
Homology
BLAST of NO03G02270 vs. NCBI_GenBank
Match: EWM29662.1 (tbc domain-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 597.0 bits (1538), Expect = 6.600e-167
Identity = 330/615 (53.66%), Postives = 413/615 (67.15%), Query Frame = 0
Query:    1 MPRTVFISRFDAASPEGGKGPIEASSVVELGDFLVKVNDVDVVGKGARHVSTLLQKGAGHDSSVVLTFRRLKDTSRCGEGARERVKQDETDGSGFQLSEKHRVVIFKHLLASEHIDEARLKSLAANGIPDVDKHLRPLVWRVLLSYLPYDRSRWDAHLKEQRTAYQQFVHDLCIIVAPTSKNGIFPSSRXXXXXXXXXXXXXXXXXXXXSW-SNKGNVMVDIP--KLSSYEPKGSTLLEPLEAEKTNTLCTENIDEETTLETSREDGQAPPSGGARTSCSSRSNDAIDMST-SRSEYLLTRPRISSDQPLFDAVRKDVVRTHSDQNFYLDRIHGPARYDALLRILFIYAKINVGTRYIQGMNELVGTLLYVFASDPDAEWAQHAEADTLFCFTHLMSQLRDVFIERMDATDTGIEGRIQQLETLLARHDPALNKHFRMLGLDAHFYSLRWITTLFCREFTLPDSIAVWDALFADEKLPEFVLFFCLAMLLEQREILLRNDFGFNLQSLQNYSPEVEVKRLLDRMKALRSYDAQLGLGLD-----DLKPSKSRLRHFLARVKSHVQDEMPVAMDSFSTESKTQLSRAGAQLKNSFGSMRKLIVDNLSVLPPPEGAG 607
            +P TVF+S FD+ S +GGKGPIE S +V +GDFLV+VN  DVVGKGARH   L++  A  D SV LTFRRL+ +S   EG R R +      +G  L+E+HRV++F++LL S+ ID+ RL SLA +GIPDVDKHLRPL WR+LL YLP + S WDAHLK++R  Y Q V +L I+  P +     P S                     SW +   +  +D P   LSS   +        E +  NT  +    +          G APP        S R +  +D+S  S  + L TRPR  +D+ LF+ +RKDVVRTH DQNFY D+  G ARYDALLRILFIYAK N GTRYIQGMNEL GTL YV + D D EWA+HAEADT+F F  LMSQLRDVFIE+MD +DTGIE + +QLE LL RHDP L+KHFRM+GL+AHFYSLRWITTLFCREFTLPD+IAVWDALFAD+   +F+L+FCL+ML+EQR+ +LR  F   LQSLQ YSPE E+KRLL RM++LR+ D+  G  +D        PS SR+R++ +RV S ++D++P+A+ SFSTESK+ L RAGAQLK SFGSMRKLI D++SVLP P   G
Sbjct:   74 LPGTVFVSHFDSVSSQGGKGPIEESGLVGVGDFLVRVNGCDVVGKGARHALALIKDEASAD-SVSLTFRRLQTSSISREGNRIRSE------AGIHLTEQHRVLMFRYLLDSKPIDKRRLASLAGDGIPDVDKHLRPLAWRILLLYLPDEVSLWDAHLKQERAIYYQLVQELTIMTGPAAS---CPPS-----ASGHVINESEDQNFRGSWRAGDASPRLDTPLCALSSAPSQ--------EGDARNTAGSMKATDPNLTFCQGHPGSAPP-----LPRSGRGSGELDVSLGSSQDRLPTRPRFDADRSLFNEIRKDVVRTHPDQNFYQDQTFGTARYDALLRILFIYAKTNSGTRYIQGMNELAGTLFYVMSRDSDQEWAEHAEADTMFLFAQLMSQLRDVFIEKMDESDTGIESKFEQLEVLLERHDPTLSKHFRMIGLEAHFYSLRWITTLFCREFTLPDTIAVWDALFADKDFSDFILYFCLSMLMEQRQEMLRCSFAKCLQSLQAYSPEAEMKRLLHRMRSLRAQDSASGFRVDRRVGEAATPSTSRVRNYFSRVSSRMRDDVPIALGSFSTESKSHLKRAGAQLKASFGSMRKLIGDSMSVLPSPGATG 660          
BLAST of NO03G02270 vs. NCBI_GenBank
Match: CBJ31828.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 236.9 bits (603), Expect = 1.700e-58
Identity = 181/578 (31.31%), Postives = 270/578 (46.71%), Query Frame = 0
Query:   20 GPIEASSVVELGDFLVKVNDVDVVGKGARHVSTLLQKGAGHDSSV---VLTFRRLKDTSRCGEGARERVKQDETDGSGFQLSEKHRVVIFKHLLASEH---IDEARLKSLAANGIPDVDKHLRPLVWRVLLSYLPYDRSRWDAHLKEQRTAYQQFVHDLCI---------------------IVAPTSKN--GIFPSSRXXXXXXXXXXXXXXXXXXXXSWSNKGNVMVDIPKLSSYEPKGSTLLEP-LEAEKTNTLCTENIDEETTLETSREDGQAPPSGGARTS-------CSSR--SNDAIDMSTSRSEYLLTRPRISSDQPLFDAVRKDVVRTHSDQNFYLDR-----------------------------IHGPARYDALLRILFIYAKINVGTRYIQGMNELVGTLLYVFASDPDAEWAQHAEADTLFCFTHLMSQLRDVFIERMDATDTGIEGRIQQLETLLARHDPALNKHFRMLGLDAHFYSLRWITTLFCREFTLPDSIAVWDALFADEKLPEFVLFFCLAMLLEQREILLRNDFGFNLQSLQNYSPEVEVKRLLDRMKALRSYDAQ 530
            GP+E+   V  GD L  VN   ++G+        +++ +   ++    VL FRR  D    G             GS  +  E+ +    + LL       +DEA+L+ + + G+PD    LRP++WR+LL  LP +R +W AHL+ QR  Y +FV DL +                     + A TS N  G   SS                       SN+        + S    KG    +P LE + +     +++ +   +E +R      PS     S       C +R  +   +D     ++       + SD+ L  A+ +DVVRT  D  FY  R                                  R +AL RILF++AK+N    Y QGMNE+V TL +V ASD + EW +H EADT FCFT+LMS++RDVF+  MD +++G+ G+++     L +HDP L +H   L LD  +++LRW TTL  REF LPD+I +WD+LFA +    F++F  + ++L QRE LL  DF  NLQ LQ Y P  +V  +L + +ALR + A+
Sbjct:  331 GPLESVGTVIPGDALASVNREVLLGRPFSECVRCIKEASSSATAARPCVLCFRR-ADPECLGANL----------GSPPRKLEQEKFRSLERLLEGGEGGVMDEAKLRGITSTGVPD-HGGLRPVLWRILLRCLPPNRPQWSAHLETQRVLYARFVDDLVLKPAKIVTQGGADSRSEETSTAVQATTSANRDGDKASSAAERLVDASSGRGVPHSHGKSGGSNEEASSCTTLEKSPRGGKGGD--DPVLEGQNSE----QDVAKVEVIEQNRIPSATKPSLQPGVSEHFPGELCLNRKLTKGPVDDDPLSNKDTSEWAALWSDKELMQAIDQDVVRTMPDLAFYACRSIEDNDSDMVGSSXXXXXXXXXXXXXXXXXXXXERREALARILFVHAKLNPAESYTQGMNEIVATLYFVLASDENEEWNRHCEADTFFCFTNLMSEIRDVFLASMDESESGLHGKMEAFSRTLRQHDPELAEHMVSLALDPRYFALRWFTTLLSREFDLPDTIRLWDSLFAAQDRSTFLVFVFVTLMLAQRETLLAGDFASNLQLLQAY-PPTDVPEILAQSEALRLFSAR 889          
BLAST of NO03G02270 vs. NCBI_GenBank
Match: XP_009041513.1 (hypothetical protein AURANDRAFT_33549, partial [Aureococcus anophagefferens] >EGB03783.1 hypothetical protein AURANDRAFT_33549, partial [Aureococcus anophagefferens])

HSP 1 Score: 236.1 bits (601), Expect = 3.000e-58
Identity = 140/409 (34.23%), Postives = 212/409 (51.83%), Query Frame = 0
Query:  110 LASEHIDEARLKSLAANGIPDVDKHLRPLVWRVLLSYLPYDRSRWDAHLKEQRTAYQQFVHDLCIIVAPTSKNGIFPSSRXXXXXXXXXXXXXXXXXXXXSWSNKGNVMVDIPKLSSYEPKGSTLLEPLEAEKTNTLCTENIDEETTLETSREDGQAPPSGGARTSCSSRSNDAIDMSTSRSEYLLTRPRISSDQPLFDAVRKDVVRTHSDQNFYLDRIHGPARYDALLRILFIYAKINVGTRYIQGMNELVGTLLYVFASDPDAEWAQHAEADTLFCFTHLMSQLRDVFIERMDATDTGIEGRIQQLETLLARHDPALNKHFRMLGLDAHFYSLRWITTLFCREFTLPDSIAVWDALFADEKLPEFVLFFCLAMLLEQREILLRNDFGFNLQSLQNY---SPEVEVKR 516
            LA++ I++++L+ +A+ G+ +    LRPLVWR+LL YLP DR  W +H++ QR  Y QFV +  I     S + I+  +                       +++ +V++DI     Y+   +T    +  +K                                               + +Y+L +            + KD++RTH D +F+     G  R  ++ RILFIYAK+N G RY+QGMNE++GT+ YV ASD + EW  +AE D  FCFT++M+++RDV+I  +D +D G+ G++ +L  LL +HDP L +H     LD  +YSLRWITTL  REFTL D+I +WD + ++    +F+  FCL M+L QRE LL  DF F L  LQNY    P V +K+
Sbjct:    1 LATDVINKSKLREVASRGLSE-SSPLRPLVWRLLLEYLPSDRREWVSHVRCQRALYHQFVREFTIC---ESGHSIWAQA-------------------DHEVASRASVVMDI-----YQGPMTTHQSSMWTQK-----------------------------------------------QHDYVLRK-----------EIHKDIMRTHPDHHFFEG---GTLRRQSMERILFIYAKLNPGVRYVQGMNEVLGTIFYVLASDSNEEWGANAEPDAFFCFTNIMAEMRDVYIHSLDNSDAGLSGKMSRLNALLQQHDPELWRHLDKNQLDPSYYSLRWITTLLAREFTLIDTIRLWDTILSEISRVDFLCHFCLTMILAQRETLLAGDFSFCLYLLQNYPASDPNVLLKQ 320          
BLAST of NO03G02270 vs. NCBI_GenBank
Match: EJK52996.1 (hypothetical protein THAOC_27644, partial [Thalassiosira oceanica])

HSP 1 Score: 221.5 bits (563), Expect = 7.600e-54
Identity = 110/229 (48.03%), Postives = 151/229 (65.94%), Query Frame = 0
Query:  306 LFDAVRKDVVRTHSDQNFYLDRIH--GPARYDALLRILFIYAKINVGTRYIQGMNELVGTLLYVFASDPDAEWAQHAEADTLFCFTHLMSQLRDVFIERMDATDTGIEGRIQQLETLLARHDPALNKHFRMLGLDAHFYSLRWITTLFCREFTLPDSIAVWDALFADEKLPEFVLFFCLAMLLEQREILLRNDFGFNLQSLQNYSPEVEVKRLLDRMKALRSYDAQLGL 533
            L D VRKDV+RTH D  F+L+     G  RY AL RILF++AK+N G RY+QGMNE+VGTL +V A D D  W++HAEADT F F  LM ++RDVF+  +D  DTGI GRI  + TLL+ HDP +  H   +G+D  FYS+RW+TTL  REF LPD++ +WD++FA      F+ +  + M++  R+ LL  DF   L+ LQ Y P  ++  LL+  +AL  Y++Q+ L
Sbjct:  297 LLDEVRKDVIRTHPDLRFFLEPADNLGQKRYAALERILFVWAKLNKGVRYVQGMNEIVGTLYFVLAQDSDESWSRHAEADTYFLFNALMVEIRDVFMAELDEADTGIHGRISNMITLLSLHDPEVRCHLDEVGIDPSFYSVRWLTTLLSREFLLPDTVRLWDSMFASTHKDNFLRYVSVTMVMVIRDRLLAGDFSACLRLLQAYPPP-DLDMLLESSRALWIYESQVTL 524          
BLAST of NO03G02270 vs. NCBI_GenBank
Match: EJK62159.1 (hypothetical protein THAOC_17243, partial [Thalassiosira oceanica])

HSP 1 Score: 221.5 bits (563), Expect = 7.600e-54
Identity = 110/229 (48.03%), Postives = 151/229 (65.94%), Query Frame = 0
Query:  306 LFDAVRKDVVRTHSDQNFYLDRIH--GPARYDALLRILFIYAKINVGTRYIQGMNELVGTLLYVFASDPDAEWAQHAEADTLFCFTHLMSQLRDVFIERMDATDTGIEGRIQQLETLLARHDPALNKHFRMLGLDAHFYSLRWITTLFCREFTLPDSIAVWDALFADEKLPEFVLFFCLAMLLEQREILLRNDFGFNLQSLQNYSPEVEVKRLLDRMKALRSYDAQLGL 533
            L D VRKDV+RTH D  F+L+     G  RY AL RILF++AK+N G RY+QGMNE+VGTL +V A D D  W++HAEADT F F  LM ++RDVF+  +D  DTGI GRI  + TLL+ HDP +  H   +G+D  FYS+RW+TTL  REF LPD++ +WD++FA      F+ +  + M++  R+ LL  DF   L+ LQ Y P  ++  LL+  +AL  Y++Q+ L
Sbjct:   68 LLDEVRKDVIRTHPDLRFFLEPADNLGQKRYAALERILFVWAKLNKGVRYVQGMNEIVGTLYFVLAQDSDESWSRHAEADTYFLFNALMVEIRDVFMAELDEADTGIHGRISNMITLLSLHDPEVRCHLDEVGIDPSFYSVRWLTTLLSREFLLPDTVRLWDSMFASTHKDNFLRYVSVTMVMVIRDRLLAGDFSACLRLLQAYPPP-DLDMLLESSRALWIYESQVTL 295          
BLAST of NO03G02270 vs. NCBI_GenBank
Match: XP_002183941.1 (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >EEC44610.1 predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 219.5 bits (558), Expect = 2.900e-53
Identity = 135/397 (34.01%), Postives = 200/397 (50.38%), Query Frame = 0
Query:  115 IDEARLKSLAANGIPDVDKHLRPLVWRVLLSYLPYDRSRWDAHLKEQRTAYQQFVHDLCIIVAPTSKNGIFPSSRXXXXXXXXXXXXXXXXXXXXSWSNKGNVMVDIPKLSSYEPKGSTLLEPLEAEKTNTLCTENIDEETTLETSREDGQAPPSGGARTSCSSRSNDAIDMSTSRSEYLLTRPRISSDQPLFDAVRKDVVRTHSDQNFYL--DRIHGPARYDALLRILFIYAKINVGTRYIQGMNELVGTLLYVFASDPDAEWAQHAEADTLFCFTHLMSQLRDVFIERMDATDTGIEGRIQQLETLLARHDPALNKHFRMLGLDAHFYSLRWITTLFCREFTLPDSIAVWDALFADEKLPEFVLFFCLAMLLEQREILLRNDFGFNLQSLQNYSP 510
            I+  +L+ L++ GIPD   H R +VWRVLL YLP + S+W+  L+E+R  Y  +  D  +              +                        +G V V +P  + +          L+  + N L + ++D+                            D I+ +T                 L D + KDVVRTH D +F+L  D+  G  RY AL RILF++AK N G RY+QGMNELV  + YV A+D +  W+  AEADT +    L  +++DVF+  +D  DTGI+GR+  L  LL RHDP + +H + LG+DA FY++RW TTL  REF LPD+I +WD++FA  +   F+ + C+ M++  R+ LL+ DF   L+ LQ+Y P
Sbjct:    2 INLVQLRKLSSLGIPDEGSH-RGVVWRVLLGYLPLELSQWEGLLQEKRQLYHSYCADYFVQTHDVRTGDALRCRKRQ--------------------RRRGRV-VSVPSYARW--------NALKVSEPN-LKSNDLDKPDW------------------------KDFIESAT-----------------LLDEIHKDVVRTHPDLSFFLDPDQNIGDRRYAALERILFVWAKYNQGVRYVQGMNELVSAMYYVLANDTNEIWSAAAEADTYWIMNTLFMEMQDVFVADLDDADTGIQGRMANLHALLTRHDPEVQEHLQELGIDASFYAIRWWTTLLSREFLLPDTIRLWDSMFASTRKDNFLRYVCVTMVMLIRDDLLKGDFSACLRLLQSYPP 326          
BLAST of NO03G02270 vs. NCBI_GenBank
Match: AMT84605.1 (RabGAP-domain containing protein [Haemaphysalis qinghaiensis])

HSP 1 Score: 219.5 bits (558), Expect = 2.900e-53
Identity = 146/427 (34.19%), Postives = 214/427 (50.12%), Query Frame = 0
Query:  102 RVVIFKHLLASEHIDEARLKSLAANGIPDVDKHLRPLVWRVLLSYLPYDRSRWDAHLKEQRTAYQQFVHDLCII------VAPTSKN----GIFPSSRXXXXXXXXXXXXXXXXXXXXSWSNKGNVMVDIPK-LSSYEPKGSTLLEPLEAEKTNTLCTENIDEETTLETSREDGQAPPSGGARTSCSSRSNDAIDMSTSRSEYLLTRPRISSDQPLFDAVRKDVVRTHSDQNFYLDRIHGPARYDALLRILFIYAKINVGTRYIQGMNELVGTLLYVFASDPDAEWAQHAEADTLFCFTHLMSQLRDVFIERMDATDTGIEGRIQQLETLLARHDPALNKHFRMLGLDAHFYSLRWITTLFCREFTLPDSIAVWDALFADEKLPEFVLFFCLAMLLEQREILLRNDFGFNLQSLQNYSPEVEVKRLL 518
            R+   ++LL S+HID  RL+ L   GIPD D  LRPL WR+LL +LP  RS W   L +QR+ Y+QFV D+ +        +PT  +     + PSSR                    ++     V++ I K +    P       P E       CT  I     ++  RE  Q       R +  +RS   I   T+ S  +  RP     + L +                       A ++ + RILF+YAK+N G  Y+QGMNE++G + Y    DPD EW +HAE D  FCFT LMS++RD FI+ +D + +GI   +++L  LL R D  L  H + L ++  +YS RWI  L  ++F LPD + +WD+LFAD K   F+++ C AML + R+ L+  DF  N++ LQN+ P+V+V  L+
Sbjct:    7 RLQDLQNLLESDHIDMQRLRELCFQGIPD-DSGLRPLCWRLLLGFLPPKRSEWSTVLAKQRSLYEQFVDDMIVSNQEGGGTSPTEPDDHPLSVSPSSR------------------WQAYFRDNEVLLQIDKDVRRLCPDMCFFQRPTEHP-----CT-RIAANPRVKGLRERVQ---RSMLRAANVTRSRQGI---TNISTCVRARPLHEPLEQLGEGQE--------------------AHWEVVERILFLYAKLNPGLGYVQGMNEIIGPIYYTLVDDPDPEWRRHAEVDCFFCFTGLMSEIRDFFIKTLDESSSGIGAMMERLMQLLRRRDDRLYGHLKQLRVEPQYYSFRWIMLLLSQDFPLPDVLRIWDSLFADPKRFSFLIYICYAMLSKLRDKLMMGDFPSNIKLLQNF-PDVDVSELI 381          
BLAST of NO03G02270 vs. NCBI_GenBank
Match: PIK59186.1 (putative TBC1 domain family member 13-like [Apostichopus japonicus])

HSP 1 Score: 219.5 bits (558), Expect = 2.900e-53
Identity = 141/435 (32.41%), Postives = 217/435 (49.89%), Query Frame = 0
Query:  101 HRVVIFKHLLASEHIDEARLKSLAANGIPDVDKHLRPLVWRVLLSYLPYDRSRWDAHLKEQRTAYQQFVHDLCIIVAPTSKNGIFPSSRXXXXXXXXXXXXXXXXXXXXSWSNKGNVMVDIPKLSSYEPKGSTLLEPLEAEKTNTLCTENIDEETTLETSREDGQAPPSGGARTSCSSRSNDAIDMSTSRSEYLLTRPRISSDQPLFDAVRKD-----VVRTHSDQNFYLDRIHGP------ARYDALLRILFIYAKINVGTRYIQGMNELVGTLLYVFASDPDAEWAQHAEADTLFCFTHLMSQLRDVFIERMDATDTGIEGRIQQLETLLARHDPALNKHFRMLGLDAHFYSLRWITTLFCREFTLPDSIAVWDALFADEKLPEFVLFFCLAMLLEQREILLRNDFGFNLQSLQNYSPEVEVKRLLDRMKALR 525
            HRV +FK  L  ++I+   LK L  NG+PD   +LRPL W+VLL YLP +R +W + + +QR  Y+QF+ D+ II    + +G+                           + +   + D                PL    T+       D +  L+  ++  +  P    ++      +D +       E    R R+     +   V K+      V T +      +  H P      A ++ + RILFIYAK+N G  Y+QGMNE++G L YVFA DP++EW +HAE DT FCFT+LM+ +RD+FI+ +D ++ GI  +++ L  LL + +  + +  +  GL+  F+S RW T L  +EF LPD I +WD L AD+   E +L  C AMLL Q + L + DF  N++ LQ+Y P V+V  L+ R   +R
Sbjct:    9 HRVQLFKECLNEDNINLKTLKKLCFNGVPD-SLNLRPLSWKVLLRYLPLEREQWKSEMAKQRALYRQFLEDV-IIKPGKAMHGV---------------------------TGEEAALTD---------------HPLNPNPTSQWSNFFKDNDVLLQIDKDTRRLQPDWIFQSPTEFPCHDLV----LAQEMETLRHRVEHTLLISSNVEKNRTGITNVPTKARTQVTAEFGHNPCGDGQEAHWEVVERILFIYAKLNPGQGYVQGMNEIIGPLYYVFACDPESEWREHAEEDTFFCFTNLMADIRDIFIKTLDHSELGIHAKMRNLMLLLKKCERPVWQSLKEQGLEPEFFSFRWFTLLLTQEFPLPDVIRIWDTLLADDNGTEMLLHICCAMLLLQSKELRKGDFASNMKLLQHY-PPVDVHVLVQRAMEVR 394          
BLAST of NO03G02270 vs. NCBI_GenBank
Match: XP_015775097.1 (PREDICTED: TBC1 domain family member 13-like isoform X1 [Acropora digitifera])

HSP 1 Score: 216.9 bits (551), Expect = 1.900e-52
Identity = 145/447 (32.44%), Postives = 207/447 (46.31%), Query Frame = 0
Query:  100 KHRVVIFKHLLASEHIDEARLKSLAANGIPDVDKHLRPLVWRVLLSYLPYDRSRWDAHLKEQRTAYQQFVHDLCIIVAPTSKNGIFPSSRXXXXXXXXXXXXXXXXXXXXSWSNKGNVMVDIPKLSSYEPKGSTLLEPLEAEKTNTLCTENIDEETTLETSREDGQAPPSGGARTSCSSRSNDAIDMSTSRSEYLLTRPRISSDQPLFDAVRKDVVRTHSD-----------QNFYLDRIHGPARY-----------DALLRILFIYAKINVGTRYIQGMNELVGTLLYVFASDPDAEWAQHAEADTLFCFTHLMSQLRDVFIERMDATDTGIEGRIQQLETLLARHDPALNKHFRMLGLDAHFYSLRWITTLFCREFTLPDSIAVWDALFADEKLPEFVLFFCLAMLLEQREILLRNDFGFNLQSLQNYSPEVEVKRLLDRMKALR 525
            K RV  F+  L++  ID   LK L  +GIPD    +R L W+++L YLP  R  W+  LK QR  Y+QFVH++ I     +K+G                             N     VD                PL     +       D E  L+  ++  +  P        +   N  +     R                F+ +R+ V+RTH +           +NF   R   PA Y           + + RIL+IYAK+N G  Y+QGMNE++G L YVF SDP  EW +H EAD  FCFT+LMS++RD FI+ +D +  GI   ++ + TLL   DP L  +     +   FYS RW+T L  +EF LPD I VWD+LFADE   +F+++ C AM +  RE LL  DF   ++ LQNY P +++  +L +   L+
Sbjct:    4 KQRVSEFQAALSAREIDLKCLKRLCFSGIPD-GSGIRSLCWKLMLGYLPPQRDLWNETLKCQRATYKQFVHEVIIEQCKGTKSG----------------------------KNSEEFDVD---------------HPLNPNPDSNWVAYFKDNEVLLQIDKDCRRLCPDISFFQIATKYPNKDVTTGCDRD---------------FETLRERVLRTHLESSQVNTNRSGLKNFSSARKIAPAEYFVLGDEQEAHWEVVERILYIYAKLNPGLGYVQGMNEIIGPLYYVFCSDPKTEWQEHVEADAFFCFTNLMSEIRDNFIKSLDDSACGIGNMMKNVRTLLKERDPLLFAYLEEQQMRPQFYSFRWLTLLLSQEFALPDVIRVWDSLFADESRFDFLIYVCCAMHMVIREQLLAGDFATTMKLLQNY-PYIDISTILSKAIELK 390          
BLAST of NO03G02270 vs. NCBI_GenBank
Match: XP_022084315.1 (TBC1 domain family member 13-like [Acanthaster planci])

HSP 1 Score: 215.3 bits (547), Expect = 5.400e-52
Identity = 143/431 (33.18%), Postives = 218/431 (50.58%), Query Frame = 0
Query:  102 RVVIFKHLLASEHIDEARLKSLAANGIPDVDKHLRPLVWRVLLSYLPYDRSRWDAHLKEQRTAYQQFVHDLCIIVAPTSKNGIFPSSRXXXXXXXXXXXXXXXXXXXXSWS---NKGNVMVDIPKLSSYEPKGSTLLEP---LEAEKTNTLCTENIDEETTLETSREDGQAPPSGGARTSCSSRSNDAIDMSTSRSEYLLTRPRISSDQPLFDAVRKDVVRTHSDQNFYLDRIHGPARYDALLRILFIYAKINVGTRYIQGMNELVGTLLYVFASDPDAEWAQHAEADTLFCFTHLMSQLRDVFIERMDATDTGIEGRIQQLETLLARHDPALNKHFRMLGLDAHFYSLRWITTLFCREFTLPDSIAVWDALFADEKLPEFVLFFCLAMLLEQREILLRNDFGFNLQSLQNYSPEVEVKRLLDRMKALRSY 527
            RV  FK LL+   ID   L  + +NGIPD    LR   WR+LL+YLP +   W    + QR  Y+QF+ ++  I+ P  K+                            WS       +++ I        K +  L+P      + T   C E ++E + +ET R+  +        T  +S      D++ ++     T P+       +D   + +                 A ++ + RILF YAK+N G  Y+QGMNE+VG + YVFASD   E  +HAEADT FCFT+LMSQ+RD FI+ +D +  GI  ++++L T+L + DP + + F   GL   F+  RW+T L  +EF LPD I +WD+LFAD++ PEF++  C AM++ QR+ +L  DF   ++ LQNY P +++  LL + + LR Y
Sbjct:    7 RVSEFKELLSKPKIDFKMLHQMCSNGIPDC-PGLRCDCWRLLLNYLPANTEEWPKVYQSQRELYKQFLQEM--IIQPGRKH------EGGSRTDVTFEDHPLNPNPNSQWSQFFKDNEILLQI-------DKDTRRLQPDIGFFQQATEYPCEELVNESSNIETLRKRVE-------HTLLNSE-----DIARNKLGISATAPK--KKPQTYDFGHETLPEGQE------------AHWEVVERILFTYAKLNPGQSYVQGMNEIVGPVYYVFASDSKQENREHAEADTFFCFTNLMSQIRDNFIKSLDHSPDGINAKMERLMTMLGQCDPQVYRVFEREGLKPEFFGFRWLTLLLSQEFPLPDVIRLWDSLFADDRRPEFLICVCCAMIVLQRDEILNGDFAVIVKLLQNY-PTIDINVLLRKAEELRKY 394          
The following BLAST results are available for this feature:
BLAST of NO03G02270 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM29662.16.600e-16753.66tbc domain-containing protein [Nannochloropsis gad... [more]
CBJ31828.11.700e-5831.31conserved unknown protein [Ectocarpus siliculosus][more]
XP_009041513.13.000e-5834.23hypothetical protein AURANDRAFT_33549, partial [Au... [more]
EJK52996.17.600e-5448.03hypothetical protein THAOC_27644, partial [Thalass... [more]
EJK62159.17.600e-5448.03hypothetical protein THAOC_17243, partial [Thalass... [more]
XP_002183941.12.900e-5334.01predicted protein, partial [Phaeodactylum tricornu... [more]
AMT84605.12.900e-5334.19RabGAP-domain containing protein [Haemaphysalis qi... [more]
PIK59186.12.900e-5332.41putative TBC1 domain family member 13-like [Aposti... [more]
XP_015775097.11.900e-5232.44PREDICTED: TBC1 domain family member 13-like isofo... [more]
XP_022084315.15.400e-5233.18TBC1 domain family member 13-like [Acanthaster pla... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL067nonsL067Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR001ncniR001Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR049ngnoR049Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005670NSK005670Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G02270.1NO03G02270.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|667361gene_1412Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100112g19gene965Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G02270.1NO03G02270.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G02270 ID=NO03G02270|Name=NO03G02270|organism=Nannochloropsis oceanica|type=gene|length=2027bp
ATGCCTCGAACGGTATTTATTTCTCGCTTCGACGCCGCAAGCCCAGAAGG
CGGTAAAGGCCCCATCGAGGCGAGCAGCGTGGTAGAATTAGGGGATTTTC
TCGTCAAGGTAAACGATGTGGATGTTGTTGGCAAAGGCGCGCGGCACGTA
TCGACGCTTCTCCAGAAAGGAGCTGGCCACGACAGCTCCGTCGTCTTGAC
GTTCCGAAGGCTCAAGGATACTTCTCGGTGTGGTGAGGGAGCACGGGAGA
GAGTTAAGCAAGACGAGACAGATGGAAGCGGTTTCCAATTATCAGAAAAA
Cgtaggttttccaggaatgggtgtaaagatggcgtacaaatatatttttc
gtaacgtacaccaccgcgatgatccccattatatctatacgctcacatct
tgcaatcacacttttcaatgtagATCGGGTCGTCATTTTCAAGCATCTCC
TGGCTAGCGAACACATTGACGAGGCGCGTCTCAAGAGCTTGGCGGCCAAC
GGGATTCCAGACGTAGATAAGCATTTGCGCCCACTTGTTTGGCGCGTTTT
GTTGTCCTACTTGCCGTACGATCGCTCGCGCTGGGATGCACACTTGAAAG
AACAACGCACAGCCTATCAGCAGTTTGTGCATGATCTCTGTATTATTGTG
GCTCCGACGTCAAAAAATGGGATTTTCCCATCCAGCAGGAGCAGTAGCTC
CAGCATCAGCACCAGCACCAGCACCAGCACCAGCACGAACGACGGAGGGA
GCTGGAGCAACAAGGGCAATGTGATGGTGGACATACCCAAACTGTCGTCC
TATGAACCAAAGGGATCGACGCTCCTAGAGCCCTTGGAAGCAGAAAAGAC
GAACACACTGTGCACTGAGAACATCGACGAGGAAACAACTTTGGAAACCT
CGCGAGAAGATGGACAAGCGCCTCCATCTGGTGGCGCACGCACCAGTTGT
AGTAGCAGAAGCAACGACGCAATTGACATGTCCACCAGCCGCTCAGAGTA
CCTTCTTACCCGGCCTCGGATCTCGTCGGACCAGCCTTTGTTTGATGCGG
TTCGCAAGGATGTAGTGCGCACTCATTCTGATCAAAATTTTTATCTTGAT
CGCATCCACGGCCCTGCGCGTTACGATGCTCTGCTGCGGATTCTCTTCAT
CTACGCCAAGATCAATGTGGGTACTCGTTATATTCAAGGAATGAATGAGC
TGGTTGGCACTCTACTTTATGTATTTGCGTCTGATCCGGACGCTGAATGG
GCGCAGCACGCCGAGGCAGATACCCTGTTCTGCTTCACGCACCTCATGTC
GCAGCTTCGGGACGTTTTCATCGAGAGGATGGATGCGACTGACACGGGTA
TTGAGGGCCGAATCCAACAATTGGAGACTCTGTTGGCACGGCACGATCCT
GCTCTAAACAAACATTTCCGCATGCTTGGCCTCGATGCGCACTTTTATTC
GCTCCGATGGATCACTACGCTCTTTTGCCGTGAGTTTACCCTTCCTGACA
GTATCGCTGTATGGGACGCATTGTTTGCAGACGAAAAGTTGCCTGAGTTT
GTGCTTTTCTTTTGTTTAGCTATGCTCCTTGAGCAGCGGGAGATATTGCT
GCGAAACGATTTCGGGTTTAATCTCCAGTCCTTGCAAAACTATTCACCCG
AGGTGGAGGTCAAACGGCTGCTGGACCGCATGAAGGCGTTGCGATCATAC
GACGCACAACTAGGCTTGGGCTTGGATGATCTGAAGCCATCCAAAAGTCG
TCTTCGCCACTTCTTGGCGCGCGTTAAGTCGCATGTCCAGGACGAAATGC
CAGTTGCTATGGATTCGTTCTCGACTGAAAGCAAAACGCAGCTGAGCCGT
GCTGGGGCGCAACTGAAGAACTCCTTTGGTAGCATGCGCAAGCTTATTGT
TGATAATTTGTCCGTTCTTCCCCCTCCGGAAGGGGCAGGTAAGACGACTA
GGCTACGCGACGTGAGGATGACACCACGAGACAAGGCGGCGGGCTCTGCC
TTGTCATCATTAAGAGACGAGCCTTGA
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protein sequence of NO03G02270.1

>NO03G02270.1-protein ID=NO03G02270.1-protein|Name=NO03G02270.1|organism=Nannochloropsis oceanica|type=polypeptide|length=635bp
MPRTVFISRFDAASPEGGKGPIEASSVVELGDFLVKVNDVDVVGKGARHV
STLLQKGAGHDSSVVLTFRRLKDTSRCGEGARERVKQDETDGSGFQLSEK
HRVVIFKHLLASEHIDEARLKSLAANGIPDVDKHLRPLVWRVLLSYLPYD
RSRWDAHLKEQRTAYQQFVHDLCIIVAPTSKNGIFPSSRSSSSSISTSTS
TSTSTNDGGSWSNKGNVMVDIPKLSSYEPKGSTLLEPLEAEKTNTLCTEN
IDEETTLETSREDGQAPPSGGARTSCSSRSNDAIDMSTSRSEYLLTRPRI
SSDQPLFDAVRKDVVRTHSDQNFYLDRIHGPARYDALLRILFIYAKINVG
TRYIQGMNELVGTLLYVFASDPDAEWAQHAEADTLFCFTHLMSQLRDVFI
ERMDATDTGIEGRIQQLETLLARHDPALNKHFRMLGLDAHFYSLRWITTL
FCREFTLPDSIAVWDALFADEKLPEFVLFFCLAMLLEQREILLRNDFGFN
LQSLQNYSPEVEVKRLLDRMKALRSYDAQLGLGLDDLKPSKSRLRHFLAR
VKSHVQDEMPVAMDSFSTESKTQLSRAGAQLKNSFGSMRKLIVDNLSVLP
PPEGAGKTTRLRDVRMTPRDKAAGSALSSLRDEP*
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Synonyms
Publications