NO03G01380, NO03G01380 (gene) Nannochloropsis oceanica

Overview
NameNO03G01380
Unique NameNO03G01380
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length513
Alignment locationchr3:427831..428343 +

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Properties
Property NameValue
DescriptionAdrenodoxin-like protein 2, mitochondrial
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:427831..428343 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0051536iron-sulfur cluster binding
GO:0009055electron transfer activity
GO:00515372 iron, 2 sulfur cluster binding
GO:0005488binding
GO:0003824catalytic activity
Vocabulary: INTERPRO
TermDefinition
IPR0360102Fe-2S_ferredoxin-like_sf
IPR0010412Fe-2S_ferredoxin-type
IPR001055Adrenodoxin
Vocabulary: Biological Process
TermDefinition
GO:0006091generation of precursor metabolites and energy
Homology
BLAST of NO03G01380 vs. NCBI_GenBank
Match: ETM01510.1 (hypothetical protein L917_01918 [Phytophthora parasitica] >ETM54714.1 hypothetical protein L914_01997 [Phytophthora parasitica])

HSP 1 Score: 157.9 bits (398), Expect = 2.800e-35
Identity = 81/163 (49.69%), Postives = 103/163 (63.19%), Query Frame = 0
Query:    8 RVAGTAITKTTTAAAASALTRKPRLVYFHGTTAVAHGSGKDLNDAPRITLHWIGKKGEEFSTDGIVGESILDAAHRHEVELEGACEGVCACSTCHVILEDPVFEKLEDPSEEEEDMLDQAFGLTPTSRLGCQVELTQVLDGIRIKLPTATRNFYIDGHVPKPH 171
            RV G  +   T  A A      PR  +FH + A  HG      + P + + +  +       +   G SILD AH ++++LEGACE   ACSTCHVILEDPVF++LE+  E+EEDMLD AFGLT TSRLGCQV +T+  +G  + LP ATRNFY+DGHVPKPH
Sbjct:    3 RVFGQRLLSRTGPANA------PR--FFHASAAALHGDMSKFANNPAVHIKFKLRDDSIKEVEAKTGMSILDVAHANDIDLEGACESSMACSTCHVILEDPVFDELEEACEDEEDMLDMAFGLTDTSRLGCQVFVTEDFEGTTVSLPKATRNFYVDGHVPKPH 157          
BLAST of NO03G01380 vs. NCBI_GenBank
Match: CBN74086.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 156.8 bits (395), Expect = 6.200e-35
Identity = 73/134 (54.48%), Postives = 95/134 (70.90%), Query Frame = 0
Query:   38 TTAVAHGSGKD-LNDAPRITLHWIGKKGEEFSTDGIVGESILDAAHRHEVELEGACEGVCACSTCHVILEDPVFEKLEDPSEEEEDMLDQAFGLTPTSRLGCQVELTQVLDGIRIKLPTATRNFYIDGHVPKPH 171
            T    HG  ++    A  + + W  K G +  T    G +++  AH+H ++LEGACEGVCACSTCHVI+ + VF++L + SE+EEDMLD AFGLT TSRLGCQV +T  +DGI +KLP ATRNFY+DGHVP+PH
Sbjct:   67 TARACHGDHEEGFEHAQTVQITWENKDGLK-KTTAKCGMNLMRVAHKHGIDLEGACEGVCACSTCHVIMSNEVFDQLPEASEDEEDMLDLAFGLTETSRLGCQVIVTPEMDGIVVKLPAATRNFYVDGHVPQPH 199          
BLAST of NO03G01380 vs. NCBI_GenBank
Match: XP_002984046.2 (adrenodoxin-like protein 2, mitochondrial [Selaginella moellendorffii])

HSP 1 Score: 155.6 bits (392), Expect = 1.400e-34
Identity = 74/132 (56.06%), Postives = 96/132 (72.73%), Query Frame = 0
Query:   40 AVAHGSGKDLNDAPRITLHWIGKKGEEFSTDGIVGESILDAAHRHEVELEGACEGVCACSTCHVI-LEDPVFEKLEDPSEEEEDMLDQAFGLTPTSRLGCQVELTQVLDGIRIKLPTATRNFYIDGHVPKPH 171
            A +  S     D P+I++ ++ K G E S    VG S+L+AAH +E+ELEGACEG  ACSTCHVI +++ +++KL +PS+EE DMLD AFGLT TSRLGCQ+     LDG+R+ LP ATRNF +DGHVPKPH
Sbjct:   55 AFSSPSAASEQDKPKISVTFVDKNGSEKSIQVPVGMSMLEAAHENEIELEGACEGSLACSTCHVIFMDEELYQKLPEPSDEENDMLDLAFGLTETSRLGCQIIAKPELDGMRLALPPATRNFAVDGHVPKPH 186          
BLAST of NO03G01380 vs. NCBI_GenBank
Match: POM58587.1 (2Fe-2S ferredoxin [Phytophthora palmivora var. palmivora])

HSP 1 Score: 155.2 bits (391), Expect = 1.800e-34
Identity = 74/147 (50.34%), Postives = 95/147 (64.63%), Query Frame = 0
Query:   24 SALTRKPRLVYFHGTTAVAHGSGKDLNDAPRITLHWIGKKGEEFSTDGIVGESILDAAHRHEVELEGACEGVCACSTCHVILEDPVFEKLEDPSEEEEDMLDQAFGLTPTSRLGCQVELTQVLDGIRIKLPTATRNFYIDGHVPKPH 171
            +A  R PR  +FH +    HG        P + L +  +       +   G S+L+ AH ++++LEGACE   ACSTCHVILED VF++LE+  E+EEDMLD AFGLT TSRLGCQV + +  DG  + LP ATRNFY+DGHVPKPH
Sbjct:   12 AARARTPR--FFHASATALHGDMSKFAGNPTVQLKFKLRDDSIKEVEAKTGMSLLEVAHANDIDLEGACESSMACSTCHVILEDSVFDELEEACEDEEDMLDMAFGLTDTSRLGCQVIVDEGFDGTTVTLPQATRNFYVDGHVPKPH 156          
BLAST of NO03G01380 vs. NCBI_GenBank
Match: XP_002960091.2 (adrenodoxin-like protein 2, mitochondrial [Selaginella moellendorffii])

HSP 1 Score: 155.2 bits (391), Expect = 1.800e-34
Identity = 72/121 (59.50%), Postives = 93/121 (76.86%), Query Frame = 0
Query:   51 DAPRITLHWIGKKGEEFSTDGIVGESILDAAHRHEVELEGACEGVCACSTCHVI-LEDPVFEKLEDPSEEEEDMLDQAFGLTPTSRLGCQVELTQVLDGIRIKLPTATRNFYIDGHVPKPH 171
            D P+I++ ++ K G E S    VG S+L+AAH +E+ELEGACEG  ACSTCHVI +++ +++KL +PS+EE DMLD AFGLT TSRLGCQ+     LDG+R+ LP ATRNF +DGHVPKPH
Sbjct:   66 DKPKISVTFVDKNGSEKSIQVPVGMSMLEAAHENEIELEGACEGSLACSTCHVIFMDEELYQKLPEPSDEENDMLDLAFGLTETSRLGCQIIAKPELDGMRLALPPATRNFAVDGHVPKPH 186          
BLAST of NO03G01380 vs. NCBI_GenBank
Match: XP_003063243.1 (predicted protein [Micromonas pusilla CCMP1545] >EEH52379.1 predicted protein [Micromonas pusilla CCMP1545])

HSP 1 Score: 154.8 bits (390), Expect = 2.300e-34
Identity = 72/129 (55.81%), Postives = 94/129 (72.87%), Query Frame = 0
Query:   43 HGSGKDLNDAPRITLHWIGKKGEEFSTDGIVGESILDAAHRHEVELEGACEGVCACSTCHVILED-PVFEKLEDPSEEEEDMLDQAFGLTPTSRLGCQVELTQVLDGIRIKLPTATRNFYIDGHVPKPH 171
            HG GKD  +A  I + +I K G E      +G+S+L+ AH++++ELEGACEG  ACSTCHVI+ED  V++ L +P ++E DMLD AFGLT TSRLGCQV   + +DG+R+ LP ATRNF +DG VPKPH
Sbjct:    2 HGHGKDDPNAETIDVTFIEKDGTETKVKAPIGQSMLEVAHKNDIELEGACEGSLACSTCHVIIEDEKVYDALPEPDDDENDMLDLAFGLTETSRLGCQVIAAKEIDGLRLSLPRATRNFAVDGFVPKPH 130          
BLAST of NO03G01380 vs. NCBI_GenBank
Match: XP_024577068.1 (ferredoxin 1-like protein [Plasmopara halstedii] >CEG40699.1 ferredoxin 1-like protein [Plasmopara halstedii])

HSP 1 Score: 154.8 bits (390), Expect = 2.300e-34
Identity = 72/138 (52.17%), Postives = 92/138 (66.67%), Query Frame = 0
Query:   34 YFHGTTAVAHG-SGKDLNDAPRITLHWIGKKGEEFSTDGIVGESILDAAHRHEVELEGACEGVCACSTCHVILEDPVFEKLEDPSEEEEDMLDQAFGLTPTSRLGCQVELTQVLDGIRIKLPTATRNFYIDGHVPKPH 171
            +F+ +  V HG      N+   + + +  +           G SILD AH ++++LEGACE   ACSTCHVILED VF+KLE+P E+EEDMLD AFGLT TSRLGCQV + +  +G  + LP ATRNFY+DGHVPKPH
Sbjct:   21 FFYASVTVLHGQQSNHTNNTTNVNIKFKLRDDTLKEVKAKTGMSILDVAHANDIDLEGACESSMACSTCHVILEDSVFDKLEEPCEDEEDMLDMAFGLTDTSRLGCQVVVQETFEGTIVTLPKATRNFYVDGHVPKPH 158          
BLAST of NO03G01380 vs. NCBI_GenBank
Match: OWZ15613.1 (2Fe-2S ferredoxin [Phytophthora megakarya])

HSP 1 Score: 154.8 bits (390), Expect = 2.300e-34
Identity = 73/147 (49.66%), Postives = 97/147 (65.99%), Query Frame = 0
Query:   24 SALTRKPRLVYFHGTTAVAHGSGKDLNDAPRITLHWIGKKGEEFSTDGIVGESILDAAHRHEVELEGACEGVCACSTCHVILEDPVFEKLEDPSEEEEDMLDQAFGLTPTSRLGCQVELTQVLDGIRIKLPTATRNFYIDGHVPKPH 171
            +A  R PR  +FH + +  HG        P + + +  +       +   G SIL+ AH ++++LEGACE   ACSTCHVILE+PVF++LE+  E+EEDMLD AFGLT TSRLGCQV + +  +G  + LP ATRNFY+DGHVPKPH
Sbjct:   12 AACIRTPR--FFHASASALHGDMSKFAANPTVHIKFKLRDDSIKEVEAKTGMSILEVAHANDIDLEGACESSMACSTCHVILEEPVFDELEEACEDEEDMLDMAFGLTDTSRLGCQVIVDEGFEGTTVTLPQATRNFYVDGHVPKPH 156          
BLAST of NO03G01380 vs. NCBI_GenBank
Match: XP_021678937.1 (uncharacterized protein LOC110663825 [Hevea brasiliensis])

HSP 1 Score: 154.8 bits (390), Expect = 2.300e-34
Identity = 79/142 (55.63%), Postives = 97/142 (68.31%), Query Frame = 0
Query:   34 YFHGTTAVAHGSGKDLNDAPR----ITLHWIGKKGEEFSTDGIVGESILDAAHRHEVELEGACEGVCACSTCHVILED-PVFEKLEDPSEEEEDMLDQAFGLTPTSRLGCQVELTQVLDGIRIKLPTATRNFYIDGHVPKPH 171
            Y   TTA    SG D+ D       I++ ++ K GEE      +G S+L+AAH H++ELEGACEG  ACSTCHVI+ D   + KLEDP++EE DMLD AFGLT TSRLGCQV     LDGIR+ +P ATRNF +DG+VPKPH
Sbjct:   61 YLFSTTA----SGSDIGDGSEGKEMISVTFVDKDGEEKHIKVPIGMSMLEAAHEHDIELEGACEGSLACSTCHVIVMDVEYYNKLEDPTDEENDMLDLAFGLTETSRLGCQVIAKPELDGIRLAIPAATRNFAVDGYVPKPH 198          
BLAST of NO03G01380 vs. NCBI_GenBank
Match: XP_008606956.1 (ferredoxin, 2Fe-2S [Saprolegnia diclina VS20] >EQC39684.1 ferredoxin, 2Fe-2S [Saprolegnia diclina VS20])

HSP 1 Score: 154.5 bits (389), Expect = 3.100e-34
Identity = 74/136 (54.41%), Postives = 92/136 (67.65%), Query Frame = 0
Query:   35 FHGTTAVAHGSGKDLNDAPRITLHWIGKKGEEFSTDGIVGESILDAAHRHEVELEGACEGVCACSTCHVILEDPVFEKLEDPSEEEEDMLDQAFGLTPTSRLGCQVELTQVLDGIRIKLPTATRNFYIDGHVPKPH 171
            FH + A+ HG+       P + +++  K G        VG SILD AH  E++LEGACE   ACSTCHVI E+PVF++L +  E+EEDMLD AFGLT TSRLGCQV +T+ L    + LP ATRNFY+DGHVPKPH
Sbjct:   31 FHSSIALQHGAAP--VGGPTVPINFRLKDGSIKQVAAAVGTSILDVAHAFEIDLEGACESSLACSTCHVIFEEPVFDELPEACEDEEDMLDMAFGLTATSRLGCQVMVTEELANAIVTLPAATRNFYVDGHVPKPH 164          
The following BLAST results are available for this feature:
BLAST of NO03G01380 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
ETM01510.12.800e-3549.69hypothetical protein L917_01918 [Phytophthora para... [more]
CBN74086.16.200e-3554.48conserved unknown protein [Ectocarpus siliculosus][more]
XP_002984046.21.400e-3456.06adrenodoxin-like protein 2, mitochondrial [Selagin... [more]
POM58587.11.800e-3450.342Fe-2S ferredoxin [Phytophthora palmivora var. pal... [more]
XP_002960091.21.800e-3459.50adrenodoxin-like protein 2, mitochondrial [Selagin... [more]
XP_003063243.12.300e-3455.81predicted protein [Micromonas pusilla CCMP1545] >E... [more]
XP_024577068.12.300e-3452.17ferredoxin 1-like protein [Plasmopara halstedii] >... [more]
OWZ15613.12.300e-3449.662Fe-2S ferredoxin [Phytophthora megakarya][more]
XP_021678937.12.300e-3455.63uncharacterized protein LOC110663825 [Hevea brasil... [more]
XP_008606956.13.100e-3454.41ferredoxin, 2Fe-2S [Saprolegnia diclina VS20] >EQC... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL070nonsL070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR053ngnoR053Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005770NSK005770Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G01380.1NO03G01380.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571708gene_1316Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100006g77gene1050Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G01380.1NO03G01380.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G01380 ID=NO03G01380|Name=NO03G01380|organism=Nannochloropsis oceanica|type=gene|length=513bp
ATGCTCGCAGCTAAAATCCGCCGGGTGGCTGGGACCGCTATCACCAAAAC
TACTACCGCCGCAGCAGCAAGCGCTTTAACAAGAAAACCACGATTAGTAT
ACTTCCATGGTACCACGGCTGTGGCGCACGGCAGTGGCAAGGATCTGAAT
GACGCGCCGCGCATTACATTGCATTGGATCGGCAAGAAAGGGGAGGAGTT
CAGCACGGACGGGATCGTGGGCGAAAGCATCCTGGACGCGGCGCACCGGC
ATGAAGTGGAGTTGGAAGGGGCGTGCGAAGGTGTGTGTGCATGTTCAACA
TGCCACGTAATTTTGGAAGACCCTGTATTTGAGAAGCTGGAAGACCCATC
GGAGGAGGAAGAGGATATGCTAGATCAGGCGTTTGGGCTCACTCCTACGT
CGCGGCTAGGGTGTCAGGTGGAATTGACTCAAGTCCTGGATGGCATAAGG
ATTAAACTACCAACTGCGACGCGTAATTTCTATATTGATGGGCATGTGCC
GAAGCCACATTAG
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protein sequence of NO03G01380.1

>NO03G01380.1-protein ID=NO03G01380.1-protein|Name=NO03G01380.1|organism=Nannochloropsis oceanica|type=polypeptide|length=171bp
MLAAKIRRVAGTAITKTTTAAAASALTRKPRLVYFHGTTAVAHGSGKDLN
DAPRITLHWIGKKGEEFSTDGIVGESILDAAHRHEVELEGACEGVCACST
CHVILEDPVFEKLEDPSEEEEDMLDQAFGLTPTSRLGCQVELTQVLDGIR
IKLPTATRNFYIDGHVPKPH*
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Synonyms
Publications