NO02G06190, NO02G06190 (gene) Nannochloropsis oceanica

Overview
NameNO02G06190
Unique NameNO02G06190
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length4233
Alignment locationchr2:1660789..1665021 -

Link to JBrowse

Properties
Property NameValue
DescriptionGlutamate decarboxylase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1660789..1665021 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0004351glutamate decarboxylase activity
GO:0030170pyridoxal phosphate binding
GO:0016831carboxy-lyase activity
GO:0003824catalytic activity
Vocabulary: Biological Process
TermDefinition
GO:0006536glutamate metabolic process
GO:0019752carboxylic acid metabolic process
GO:0009987cellular process
GO:0008152metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR015424PyrdxlP-dep_Trfase
IPR010107Glutamate_decarboxylase
IPR002129PyrdxlP-dep_de-COase
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Homology
[Close]
BLAST of NO02G06190 vs. NCBI_GenBank
Match: XP_009514222.1 (hypothetical protein PHYSODRAFT_477654 [Phytophthora sojae] >EGZ26947.1 hypothetical protein PHYSODRAFT_477654 [Phytophthora sojae])

HSP 1 Score: 495.0 bits (1273), Expect = 2.400e-136
Identity = 239/382 (62.57%), Postives = 288/382 (75.39%), Query Frame = 0 
Query:   44 CARTMRKSIPKHELPDTPLPANVVKTLIDDEMILDGTPRMNLATFVTTYMEKECEELMMDAARKNYIDIDEYPQTYEIQKRCVNMLSRLWHAPLEPEEDATGTSTVGSSEAIMLAVLNMKWAWRKKRIAQGKPHDKPNLVCGSNVQVCWEKAMRYFEVEERLADVSPDCLVLTAERAKPLIDENTIGVCPILGSTFNGEFEDVQAIHDMLEALNAETGWDVPIHVDAASGGFIAPFINPDLVWDFRLPLVKSINASGHKFGLVYAGVGWLCFREKPALQQELTFTVDYLGGSQSSMTLNFSRGASQLVGQYYNFLRLGKEGYREVMTNAMENARYLREALLATGKVEIVDKEHMPLVAFALKPNLDILYTVFEIQDKLRERG 426
            C+     + P+H      +PA V   +I DE+ LDG P MNLA+FVTTYME+E EELM++  RKNYID+D+YPQT EI  RCV ML+ L+HAPL     ATGT  +GSSEAIMLA L MK  W+ +RIA G  ++KPN+V GSNVQVCW K  +YFE+E R ADVSPDCLVLTAERA+PL+DENTIGV  ILGSTFNGE+ED++ IHDML   N   GW +P+HVDAASGGFIAPFI+PDL+WDFRLP VKSIN SGHKFGLVYAG+GW  +REK  L ++L F V+YLGG QSS TLNFS+GA  +V QYYN LR G +GYR +M  +MENA +LR AL+ T    IVDK HMPLVAF+LK +    Y+ F+IQ+KL+ RG
Sbjct:    2 CSDLATDTFPQHS-----VPARVAHQMIKDELALDGNPSMNLASFVTTYMEREAEELMIEGLRKNYIDLDQYPQTAEIHNRCVQMLANLYHAPLGEGVKATGTGCIGSSEAIMLAGLAMKRKWKDRRIAAGLSYEKPNMVFGSNVQVCWHKMCKYFEIEIREADVSPDCLVLTAERARPLLDENTIGVGAILGSTFNGEYEDIKGIHDMLVEENERNGWHIPLHVDAASGGFIAPFISPDLLWDFRLPNVKSINVSGHKFGLVYAGMGWAIWREKEDLPEDLVFHVNYLGGDQSSFTLNFSKGAGNVVAQYYNLLRFGFDGYRRIMEASMENAAFLRRALVDTDLFNIVDKAHMPLVAFSLKDS--SAYSCFDIQEKLKARG 376
[Close]
BLAST of NO02G06190 vs. NCBI_GenBank
Match: XP_009514225.1 (hypothetical protein PHYSODRAFT_308494 [Phytophthora sojae] >EGZ26950.1 hypothetical protein PHYSODRAFT_308494 [Phytophthora sojae])

HSP 1 Score: 495.0 bits (1273), Expect = 2.400e-136
Identity = 239/382 (62.57%), Postives = 288/382 (75.39%), Query Frame = 0 
Query:   44 CARTMRKSIPKHELPDTPLPANVVKTLIDDEMILDGTPRMNLATFVTTYMEKECEELMMDAARKNYIDIDEYPQTYEIQKRCVNMLSRLWHAPLEPEEDATGTSTVGSSEAIMLAVLNMKWAWRKKRIAQGKPHDKPNLVCGSNVQVCWEKAMRYFEVEERLADVSPDCLVLTAERAKPLIDENTIGVCPILGSTFNGEFEDVQAIHDMLEALNAETGWDVPIHVDAASGGFIAPFINPDLVWDFRLPLVKSINASGHKFGLVYAGVGWLCFREKPALQQELTFTVDYLGGSQSSMTLNFSRGASQLVGQYYNFLRLGKEGYREVMTNAMENARYLREALLATGKVEIVDKEHMPLVAFALKPNLDILYTVFEIQDKLRERG 426
            C+     + P+H      +PA V   +I DE+ LDG P MNLA+FVTTYME+E EELM++  RKNYID+D+YPQT EI  RCV ML+ L+HAPL     ATGT  +GSSEAIMLA L MK  W+ +RIA G  ++KPN+V GSNVQVCW K  +YFE+E R ADVSPDCLVLTAERA+PL+DENTIGV  ILGSTFNGE+ED++ IHDML   N   GW +P+HVDAASGGFIAPFI+PDL+WDFRLP VKSIN SGHKFGLVYAG+GW  +REK  L ++L F V+YLGG QSS TLNFS+GA  +V QYYN LR G +GYR +M  +MENA +LR AL+ T    IVDK HMPLVAF+LK +    Y+ F+IQ+KL+ RG
Sbjct:    2 CSDLATDTFPQHS-----VPARVAHQMIKDELALDGNPSMNLASFVTTYMEREAEELMIEGLRKNYIDLDQYPQTAEIHNRCVQMLANLYHAPLGEGVKATGTGCIGSSEAIMLAGLAMKRKWKDRRIAAGLSYEKPNMVFGSNVQVCWHKMCKYFEIEIREADVSPDCLVLTAERARPLLDENTIGVGAILGSTFNGEYEDIKGIHDMLVEENERNGWHIPLHVDAASGGFIAPFISPDLLWDFRLPNVKSINVSGHKFGLVYAGMGWAIWREKEDLPEDLVFHVNYLGGDQSSFTLNFSKGAGNVVAQYYNLLRFGFDGYRRIMEASMENAAFLRRALVDTDLFNIVDKAHMPLVAFSLKDS--SAYSCFDIQEKLKARG 376
[Close]
BLAST of NO02G06190 vs. NCBI_GenBank
Match: XP_012194441.1 (glutamate decarboxylase [Saprolegnia parasitica CBS 223.65] >KDO34774.1 glutamate decarboxylase [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 493.4 bits (1269), Expect = 6.900e-136
Identity = 246/388 (63.40%), Postives = 288/388 (74.23%), Query Frame = 0 
Query:   39 YGYAYCARTMRKSIPKHELPDTPLPANVVKTLIDDEMILDGTPRMNLATFVTTYMEKECEELMMDAARKNYIDIDEYPQTYEIQKRCVNMLSRLWHAPLEPEEDATGTSTVGSSEAIMLAVLNMKWAWRKKRIAQGKPHDKPNLVCGSNVQVCWEKAMRYFEVEERLADVSPDCLVLTAERAKPLIDENTIGVCPILGSTFNGEFEDVQAIHDMLEALNAETGWDVPIHVDAASGGFIAPFINPDLVWDFRLPLVKSINASGHKFGLVYAGVGWLCFREKPALQQELTFTVDYLGGSQSSMTLNFSRGASQLVGQYYNFLRLGKEGYREVMTNAMENARYLREALLATGKVEIVDKEHMPLVAFALKPNLDIL-YTVFEIQDKLRERG 426
            Y +  CAR      P    P+  +PANV   LI DE+ LDG P MNLA+FVTTYME E E+LM+   +KNYID+D+YPQT EI  RCV +LS L++AP  P    TGT  VGSSEAIMLA L MK  WR +R+A G P DKPN+V GSNVQVCW K  +YFE+E R ADVSPD LVLTAERA+ LIDENTIG+C ILGSTFNGEFE+VQAIH M E LN   GW++ IHVDAASGGFIAPF++P+LVWDFRLPLVKSIN SGHKFGLVYAG+GW  +RE   L  +L F V+YLGG Q+S TLNFS+GAS ++ QYYN +RLG++GYRE++   M NA YLRE L+ATG   IVDK HMPLVAF L        +T F+IQDKLR RG
Sbjct:   13 YAHPACAR----DCPTDTFPEEAMPANVAYQLIFDELALDGNPSMNLASFVTTYMEPEAEQLMLAGLKKNYIDMDQYPQTAEIHNRCVAILSNLFNAPGVP----TGTGCVGSSEAIMLAGLAMKRKWRDRRLAAGLPADKPNMVFGSNVQVCWHKMCKYFEIEPREADVSPDELVLTAERARGLIDENTIGICAILGSTFNGEFENVQAIHTMAEQLNEIHGWELGIHVDAASGGFIAPFLHPELVWDFRLPLVKSINVSGHKFGLVYAGMGWALWREPEDLPDDLVFHVNYLGGDQASFTLNFSKGASNVIAQYYNIVRLGRDGYREILLRTMHNAEYLRERLVATGHFAIVDKAHMPLVAFCLNEEEGSKPFTCFDIQDKLRSRG 392
[Close]
BLAST of NO02G06190 vs. NCBI_GenBank
Match: CCA15197.1 (unnamed protein product [Albugo laibachii Nc14])

HSP 1 Score: 493.0 bits (1268), Expect = 9.000e-136
Identity = 233/374 (62.30%), Postives = 284/374 (75.94%), Query Frame = 0 
Query:   52 IPKHELPDTPLPANVVKTLIDDEMILDGTPRMNLATFVTTYMEKECEELMMDAARKNYIDIDEYPQTYEIQKRCVNMLSRLWHAPLEPEEDATGTSTVGSSEAIMLAVLNMKWAWRKKRIAQGKPHDKPNLVCGSNVQVCWEKAMRYFEVEERLADVSPDCLVLTAERAKPLIDENTIGVCPILGSTFNGEFEDVQAIHDMLEALNAETGWDVPIHVDAASGGFIAPFINPDLVWDFRLPLVKSINASGHKFGLVYAGVGWLCFREKPALQQELTFTVDYLGGSQSSMTLNFSRGASQLVGQYYNFLRLGKEGYREVMTNAMENARYLREALLATGKVEIVDKEHMPLVAFALKPNLDILYTVFEIQDKLRERG 426
            +P    P  P PA V   +I DE+ LDG P+MNLA+FVTTYME E ++LM+D  RKNYID+D+YPQT EI  RCV ML+ L+HAPL+  E  TGT  VGSSEAIMLA L MK  W+ +RIA G  +D PN+V GSNVQVCW K  +YFE+  R ADVS DCLVLTA+RA+PL+DENTIGVC ILGSTFNGE+EDV+AIHDM+E +NAE  W +P+HVDAASGGFIAPF+NP+L WDFRLP VKSIN SGHKFGLVYAG+GW  +RE   L  +L F V+YLGG Q+S TLNFS+GA  ++ QYYN +R G +GYR +M  +M+ A YLR+ALL T    IVDK+HMPLVAF L  +    Y+ ++IQ+KL+ RG
Sbjct:   23 LPTERFPQYPTPARVAHQIIKDELSLDGNPKMNLASFVTTYMEPEADDLMVDGMRKNYIDLDQYPQTAEIHNRCVTMLANLYHAPLKDNEKGTGTGCVGSSEAIMLAGLAMKRRWKDRRIAAGLSYDNPNMVMGSNVQVCWHKMCKYFEIGIREADVSEDCLVLTADRARPLLDENTIGVCAILGSTFNGEYEDVKAIHDMVEEVNAENRWGIPVHVDAASGGFIAPFLNPELEWDFRLPNVKSINVSGHKFGLVYAGIGWALWREPEDLPADLVFHVNYLGGDQASFTLNFSKGAGNVIVQYYNIVRFGYDGYRRIMQASMDTASYLRQALLDTDHFRIVDKQHMPLVAFTLIDS--SRYSCYDIQNKLKFRG 394
[Close]
BLAST of NO02G06190 vs. NCBI_GenBank
Match: XP_008605209.1 (glutamate decarboxylase [Saprolegnia diclina VS20] >EQC41495.1 glutamate decarboxylase [Saprolegnia diclina VS20])

HSP 1 Score: 491.9 bits (1265), Expect = 2.000e-135
Identity = 247/393 (62.85%), Postives = 290/393 (73.79%), Query Frame = 0 
Query:   39 YGYAYCARTMRKSIPKHELPDTPLPANVVKTLIDDEMILDGTPRMNLATFVTTYMEKECEELMMDAARKNYIDIDEYPQTYEIQKRCVNMLSRLWHAPLEPEEDATGTSTVGSSEAIMLAVLNMKWAWRKKRIAQGKPHDKPNLVCGSNVQVCWEKAMRYFEVEERLADVSPDCLVLTAERAKPLIDENTIGVCPILGSTFNGEFEDVQAIHDMLEALNAETGWDVPIHVDAASGGFIAPFINPDLVWDFRLPLVKSINASGHKFGLVYAGVGWLCFREKPALQQELTFTVDYLGGSQSSMTLNFSRGASQLVGQYYNFLRLGKEGYREVMTNAMENARYLREALLATGKVEIVDKEHMPLVAFAL------KPNLDILYTVFEIQDKLRERG 426
            Y +  CAR      P    P+  +PANV   LI DE+ LDG P MNLA+FVTTYME E E+LM+   +KNYID+D+YPQT EI  RCV +LS L++AP  P    TGT  VGSSEAIMLA L MK  WR +R+A G P DKPN+V GSNVQVCW K  +YFE+E R ADVSPD LVLTAERA+ LIDENTIG+C ILGSTFNGEFE+VQAIH M E LN   GW++ IHVDAASGGFIAPF++P+LVWDFRLPLVKSIN SGHKFGLVYAG+GW  +RE   L  +L F V+YLGG Q+S TLNFS+GAS ++ QYYN +RLG++GYRE++   M NA YLRE L+ATG   IVDK HMPLVAF L      KP     ++ F+IQDKLR RG
Sbjct:   13 YAHPACAR----DCPTDTFPEEAMPANVAYQLIFDELALDGNPSMNLASFVTTYMEPEAEQLMLAGLKKNYIDMDQYPQTAEIHNRCVAILSNLFNAPGVP----TGTGCVGSSEAIMLAGLAMKRKWRDRRLAAGLPADKPNMVFGSNVQVCWHKMCKYFEIEPREADVSPDELVLTAERARGLIDENTIGICAILGSTFNGEFENVQAIHTMAEQLNELHGWELGIHVDAASGGFIAPFLHPELVWDFRLPLVKSINVSGHKFGLVYAGMGWALWREPEDLPDDLVFHVNYLGGDQASFTLNFSKGASNVIAQYYNIVRLGRDGYREILLRTMHNAEYLRERLVATGHFAIVDKAHMPLVAFCLNEEEGKKP-----FSCFDIQDKLRSRG 392
[Close]
BLAST of NO02G06190 vs. NCBI_GenBank
Match: ORY45621.1 (glutamate decarboxylase [Rhizoclosmatium globosum])

HSP 1 Score: 490.3 bits (1261), Expect = 5.900e-135
Identity = 239/396 (60.35%), Postives = 291/396 (73.48%), Query Frame = 0 
Query:   31 SEVTYGYSYGYAYCARTMRKSIPKHELPDTPLPANVVKTLIDDEMILDGTPRMNLATFVTTYMEKECEELMMDAARKNYIDIDEYPQTYEIQKRCVNMLSRLWHAPLEPEE-DATGTSTVGSSEAIMLAVLNMKWAWRKKRIAQGKPHDKPNLVCGSNVQVCWEKAMRYFEVEERLADVSPDCLVLTAERAKPLIDENTIGVCPILGSTFNGEFEDVQAIHDMLEALNAETGWDVPIHVDAASGGFIAPFINPDLVWDFRLPLVKSINASGHKFGLVYAGVGWLCFREKPALQQELTFTVDYLGGSQSSMTLNFSRGASQLVGQYYNFLRLGKEGYREVMTNAMENARYLREALLATGKVEIVDKEHMPLVAFALKPNLDILYTVFEIQDKLRERG 426
            ++ T   ++   Y +  M +  P   +P+  +   + K +I D + LDG P +N+A+FVTT+M++E EELMM+  RKN+ID+DEY QT E+  RCV M++ L+HAP  P+     GT T+GSSEAIML VL M          QG P DKPNLVCGSNVQVCW KA RYFEVE R ADVSPDCLVLTAERA PLI+ENTIGVCPILGSTFNGEFE+V+ IHDM+  LNA  GW +PIHVDAASGGFIAPF +PDL+WDFRLP VKSIN SGHKFGLVYAG+GW  +RE   L +EL F V+YLGG Q+S TLNFS+G+S ++GQYYN +RLGKEGYR++M   M NA YLR+ L   G   IVDK HMPLVAFALK      YTVF+IQD+++ +G
Sbjct:    9 TQTTTDTNWTPVYGSLAMTQHAPFRVMPEESMEPRIAKQMISDILSLDGNPTLNMASFVTTFMDEEAEELMMEGMRKNFIDLDEYEQTAELHNRCVAMIANLFHAPTPPKNMPHPGTGTIGSSEAIMLCVLAMXXXXXXXXXEQGLPADKPNLVCGSNVQVCWHKACRYFEVECREADVSPDCLVLTAERALPLINENTIGVCPILGSTFNGEFENVKEIHDMVVELNATNGWAIPIHVDAASGGFIAPFTDPDLLWDFRLPNVKSINVSGHKFGLVYAGIGWALWREPQDLPEELVFHVNYLGGDQASFTLNFSKGSSTVIGQYYNLIRLGKEGYRKIMLAGMANATYLRQKLQDMGLFTIVDKGHMPLVAFALKDASK--YTVFDIQDRMKHQG 402
[Close]
BLAST of NO02G06190 vs. NCBI_GenBank
Match: CCA23794.1 (unnamed protein product [Albugo laibachii Nc14])

HSP 1 Score: 485.7 bits (1249), Expect = 1.400e-133
Identity = 238/391 (60.87%), Postives = 283/391 (72.38%), Query Frame = 0 
Query:   52 IPKHELPDTPLPANVVKTLIDDEMILDGTPRMN-----------------LATFVTTYMEKECEELMMDAARKNYIDIDEYPQTYEIQKRCVNMLSRLWHAPLEPEEDATGTSTVGSSEAIMLAVLNMKWAWRKKRIAQGKPHDKPNLVCGSNVQVCWEKAMRYFEVEERLADVSPDCLVLTAERAKPLIDENTIGVCPILGSTFNGEFEDVQAIHDMLEALNAETGWDVPIHVDAASGGFIAPFINPDLVWDFRLPLVKSINASGHKFGLVYAGVGWLCFREKPALQQELTFTVDYLGGSQSSMTLNFSRGASQLVGQYYNFLRLGKEGYREVMTNAMENARYLREALLATGKVEIVDKEHMPLVAFALKPNLDILYTVFEIQDKLRERG 426
            +P  E P   +PA V   +I DE+ LDG P+MN                 LATFVTTYME E E+LM++  RKN+ID+DEYPQT EI  RCV +LS L+HAPL P +  TGT  VGSSEAIMLA L +K  W+ +RIA G  ++KPN+V GSNVQVCW K  +YFE+E R ADVS DCLVLTAERA  L+DENTIGVC ILGSTFNGE+E+V+ IHD L  +N E GW++PIHVDAASGGFIAPF+NP+L WDFRLP VKSIN SGHKFGLVYAG+GW  +RE   L  +L F V+YLGG QSS TLNFS+GA  ++ QYYN LR G  GYR +M  +M+ A YLR AL+ATG   IVDK+HMPLVAF L  +    YT F+IQDK+R RG
Sbjct:   41 LPTSEFPRNTVPARVAHQIIRDELALDGNPKMNVRPIFLQNALLTFFGSQLATFVTTYMEPEAEDLMVEGLRKNFIDLDEYPQTAEIHNRCVTILSNLYHAPLSPGDRGTGTGCVGSSEAIMLAGLALKRRWKDRRIAAGLSYEKPNIVMGSNVQVCWHKMCKYFEIEAREADVSEDCLVLTAERAVALVDENTIGVCAILGSTFNGEYENVKEIHDALIKVNQEHGWEIPIHVDAASGGFIAPFLNPELEWDFRLPNVKSINVSGHKFGLVYAGIGWALWREPEDLPADLVFHVNYLGGDQSSFTLNFSKGAGNVIAQYYNILRFGFHGYRLIMQASMDTAAYLRSALVATGHFRIVDKQHMPLVAFCLIDSK--RYTCFDIQDKVRSRG 429
[Close]
BLAST of NO02G06190 vs. NCBI_GenBank
Match: XP_009825216.1 (glutamate decarboxylase [Aphanomyces astaci] >ETV85198.1 glutamate decarboxylase [Aphanomyces astaci])

HSP 1 Score: 483.4 bits (1243), Expect = 7.200e-133
Identity = 238/378 (62.96%), Postives = 290/378 (76.72%), Query Frame = 0 
Query:   50 KSIPKHELPDTPLPANVVKTLIDDEMILDGTPRMNLATFVTTYMEKECEELMMDAARKNYIDIDEYPQTYEIQKRCVNMLSRLWHAPLEPEEDATGTSTVGSSEAIMLAVLNMKWAWRKKRIAQGKPHDKPNLVCGSNVQVCWEKAMRYFEVEERLADVSPDCLVLTAERAKPLIDENTIGVCPILGSTFNGEFEDVQAIHDMLEALNAETGWDVPIHVDAASGGFIAPFINPDLVWDFRLPLVKSINASGHKFGLVYAGVGWLCFREKPALQQELTFTVDYLGGSQSSMTLNFSRGASQLVGQYYNFLRLGKEGYREVMTNAMENARYLREALLATGK--VEIVDKEHMPLVAFALKPNLDILYTVFEIQDKLRERG 426
            + +P  + P    PA+V   LI DE+ LD  P+MNLA+FVTT+ME E E ++ +  RKNYID+D+YPQ+ +I KRCV ML+ L+HAP +P     GTS VGSSEAIMLA L MK  W+ +R AQG P DKPN+V G+NVQVCW K  RYF+VE R A+V+P+ LVLT +RA+PLIDENTIGVC +LGSTFNGEFEDVQ IHDM+EA+N E GW+V IHVDAASGGFIAPF+NP+LVWDFRLPLVKSIN SGHKFGLVYAG+GW  +RE   L ++L F V+YLGG Q++ TLNFS+GA  ++ QYYNF+R+G+EGYR +M   M  A YLR  L  TG+   +IVDK HMPLVAFALK N D  YT F+IQDK+R RG
Sbjct:   26 EGLPDSKFPTFGTPASVAADLIKDELSLDCNPKMNLASFVTTFMEAEAEAILFEGMRKNYIDLDQYPQSADIHKRCVAMLADLFHAPSDP----VGTSCVGSSEAIMLAGLAMKRKWKHRRDAQGLPTDKPNMVMGANVQVCWHKMCRYFDVECREANVTPEVLVLTPQRAEPLIDENTIGVCVVLGSTFNGEFEDVQGIHDMVEAMNDEHGWEVGIHVDAASGGFIAPFLNPELVWDFRLPLVKSINVSGHKFGLVYAGIGWALWREPADLPEDLVFHVNYLGGDQAAFTLNFSKGAGTILAQYYNFIRMGREGYRLIMDAGMNTAEYLRCRLSDTGEWLFDIVDKAHMPLVAFALK-NSD-KYTCFDIQDKVRSRG 397
[Close]
BLAST of NO02G06190 vs. NCBI_GenBank
Match: XP_008867676.1 (glutamate decarboxylase [Aphanomyces invadans] >ETW03447.1 glutamate decarboxylase [Aphanomyces invadans])

HSP 1 Score: 481.5 bits (1238), Expect = 2.700e-132
Identity = 233/374 (62.30%), Postives = 282/374 (75.40%), Query Frame = 0 
Query:   52 IPKHELPDTPLPANVVKTLIDDEMILDGTPRMNLATFVTTYMEKECEELMMDAARKNYIDIDEYPQTYEIQKRCVNMLSRLWHAPLEPEEDATGTSTVGSSEAIMLAVLNMKWAWRKKRIAQGKPHDKPNLVCGSNVQVCWEKAMRYFEVEERLADVSPDCLVLTAERAKPLIDENTIGVCPILGSTFNGEFEDVQAIHDMLEALNAETGWDVPIHVDAASGGFIAPFINPDLVWDFRLPLVKSINASGHKFGLVYAGVGWLCFREKPALQQELTFTVDYLGGSQSSMTLNFSRGASQLVGQYYNFLRLGKEGYREVMTNAMENARYLREALLATGKVEIVDKEHMPLVAFALKPNLDILYTVFEIQDKLRERG 426
            +P    P    PA+V   LI D++ LD  P+MNLA+FVTT+ME E E ++ +  RKN+ID+D+YPQ+ +I KRCV ML+ L+HAP +P     GTS VGSSEAIMLA L MK  W+ +R A+G P  KPN+V G+NVQVCW K  +YF+VE R ADVSPDCLVLT  RAKPLIDENTIGVC +LGSTFNGEFEDVQ +HD+L  LN E GWDV IHVDAASGGFIAPF+NPDL+WDFRLPLVKSIN SGHKFGLVYAG+GW  +RE   L ++L F V+YLGG Q++ TLNFS+GA  ++ QYYNF+R+G++GYR +M   M  A YLR  L  TG  +IVDK HMPLVAF LK +    YT F+IQDK+R RG
Sbjct:  364 LPDTTFPSYGTPASVAADLIKDDLSLDCNPKMNLASFVTTFMEAEAEAILFEGMRKNFIDLDQYPQSADIHKRCVAMLADLYHAPGDP----VGTSCVGSSEAIMLAGLAMKRKWQHRRKAKGLPTSKPNMVMGANVQVCWHKMCQYFDVEGREADVSPDCLVLTPARAKPLIDENTIGVCVVLGSTFNGEFEDVQGVHDLLIQLNLEHGWDVGIHVDAASGGFIAPFLNPDLMWDFRLPLVKSINVSGHKFGLVYAGIGWALWRETSDLPEDLVFHVNYLGGDQAAFTLNFSKGAGTILAQYYNFIRMGRQGYRLIMDAGMSTAEYLRCRLRETGHFDIVDKAHMPLVAFKLKKS--DKYTCFDIQDKVRSRG 731
[Close]
BLAST of NO02G06190 vs. NCBI_GenBank
Match: XP_008867677.1 (glutamate decarboxylase, variant 1 [Aphanomyces invadans] >ETW03448.1 glutamate decarboxylase, variant 1 [Aphanomyces invadans])

HSP 1 Score: 481.5 bits (1238), Expect = 2.700e-132
Identity = 233/374 (62.30%), Postives = 282/374 (75.40%), Query Frame = 0 
Query:   52 IPKHELPDTPLPANVVKTLIDDEMILDGTPRMNLATFVTTYMEKECEELMMDAARKNYIDIDEYPQTYEIQKRCVNMLSRLWHAPLEPEEDATGTSTVGSSEAIMLAVLNMKWAWRKKRIAQGKPHDKPNLVCGSNVQVCWEKAMRYFEVEERLADVSPDCLVLTAERAKPLIDENTIGVCPILGSTFNGEFEDVQAIHDMLEALNAETGWDVPIHVDAASGGFIAPFINPDLVWDFRLPLVKSINASGHKFGLVYAGVGWLCFREKPALQQELTFTVDYLGGSQSSMTLNFSRGASQLVGQYYNFLRLGKEGYREVMTNAMENARYLREALLATGKVEIVDKEHMPLVAFALKPNLDILYTVFEIQDKLRERG 426
            +P    P    PA+V   LI D++ LD  P+MNLA+FVTT+ME E E ++ +  RKN+ID+D+YPQ+ +I KRCV ML+ L+HAP +P     GTS VGSSEAIMLA L MK  W+ +R A+G P  KPN+V G+NVQVCW K  +YF+VE R ADVSPDCLVLT  RAKPLIDENTIGVC +LGSTFNGEFEDVQ +HD+L  LN E GWDV IHVDAASGGFIAPF+NPDL+WDFRLPLVKSIN SGHKFGLVYAG+GW  +RE   L ++L F V+YLGG Q++ TLNFS+GA  ++ QYYNF+R+G++GYR +M   M  A YLR  L  TG  +IVDK HMPLVAF LK +    YT F+IQDK+R RG
Sbjct:  348 LPDTTFPSYGTPASVAADLIKDDLSLDCNPKMNLASFVTTFMEAEAEAILFEGMRKNFIDLDQYPQSADIHKRCVAMLADLYHAPGDP----VGTSCVGSSEAIMLAGLAMKRKWQHRRKAKGLPTSKPNMVMGANVQVCWHKMCQYFDVEGREADVSPDCLVLTPARAKPLIDENTIGVCVVLGSTFNGEFEDVQGVHDLLIQLNLEHGWDVGIHVDAASGGFIAPFLNPDLMWDFRLPLVKSINVSGHKFGLVYAGIGWALWRETSDLPEDLVFHVNYLGGDQAAFTLNFSKGAGTILAQYYNFIRMGRQGYRLIMDAGMSTAEYLRCRLRETGHFDIVDKAHMPLVAFKLKKS--DKYTCFDIQDKVRSRG 715
The following BLAST results are available for this feature:
BLAST of NO02G06190 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_009514222.12.400e-13662.57hypothetical protein PHYSODRAFT_477654 [Phytophtho... [more]
XP_009514225.12.400e-13662.57hypothetical protein PHYSODRAFT_308494 [Phytophtho... [more]
XP_012194441.16.900e-13663.40glutamate decarboxylase [Saprolegnia parasitica CB... [more]
CCA15197.19.000e-13662.30unnamed protein product [Albugo laibachii Nc14][more]
XP_008605209.12.000e-13562.85glutamate decarboxylase [Saprolegnia diclina VS20]... [more]
ORY45621.15.900e-13560.35glutamate decarboxylase [Rhizoclosmatium globosum][more]
CCA23794.11.400e-13360.87unnamed protein product [Albugo laibachii Nc14][more]
XP_009825216.17.200e-13362.96glutamate decarboxylase [Aphanomyces astaci] >ETV8... [more]
XP_008867676.12.700e-13262.30glutamate decarboxylase [Aphanomyces invadans] >ET... [more]
XP_008867677.12.700e-13262.30glutamate decarboxylase, variant 1 [Aphanomyces in... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL019nonsL019Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR004ngnoR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007285NSK007285Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G06190.2NO02G06190.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO02G06190.1NO02G06190.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575790gene_1213Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100729g1gene562Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G06190.2NO02G06190.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO02G06190.1NO02G06190.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G06190 ID=NO02G06190|Name=NO02G06190|organism=Nannochloropsis oceanica|type=gene|length=4233bp
CCTCAGAGTCGACACACAACGCTGTCAATAGCCGAGCGGACAACATAATA
AGCCAAGCCATCATCAGCCTCTTCCCGACTCTACAGCATTATGGCTTCCC
TCGACGAGCGTCTGGTCGACTCCTCCTCCTCACAAACGCCGCCTCACCCC
TTAAATCGCCAGTCTACAATTTCCCAACCTTCAGAGGTGACCTATGGCTA
CAGgtaggaagaacagagggaggagtacttggaggaggtaagtgggttag
atgaatgatgtcgggaaattgaccatatctcccactcttcttgcctactg
atagCTACGGCTATGCCTACTGCGCGCGCACCATGCGTAAGAGTATCCCT
AAGCATGAGTTGCCCGACACGCCCTTGCCTGCCAATGTAGTGAAGgtaag
gaggacgagcaggaggcacagccataagacgctgacccaaccattggcgg
gttttcttcacgtcattcgtttgctcacttgtttgtttgtttctccccat
ccccacctcttcttgccaccttactccgtatagACTTTGATCGACGATGA
AATGATCCTGGATGGCACGCCCAGGATGAACCTCGCTACGTTTGTCACGA
CCTACATGGAGAAGGAGTGCGAGGAGCTGATGATGGACGCAGCCAGGAAA
AATTATATTGgtgggtaccacgggaggcagtgaaatggaagggagggaag
aaaggaaatgacgagggtaaagatggggaagtggcgaaccagacataagc
ctacatgctccctgtgattgacgggacccttcacactatggttgatgacg
ccgcagATATCGACGAGTACCCGCAGACATACGAGATCCAGAAGCGCTGC
GTGAACATGCTTTCGCGTCTCTGGCACGCCCCCTTGGAGCCGGAGGAAGg
taaggagggagggcagggacgggagacgagaggcgagagacataaagaga
gaggggttgagggccaagagaaatgtcaaatcctgctagagtcctaggct
actggccaagcacctccttgtactctgggtaactctctcatcatgaacca
ccatcttctttttctccttactttcaccccaccagATGCAACCGGCACGT
CCACCGTGGGGTCGTCGGAGGCCATCATGCTGGCCGTTTTGAACATGAAG
TGGGCCTGGCGGAAGAAGCGTATCGCCCAAGGCAAGCCCCATGACAAGCC
GAATTTGgtgaggaggagggaaaggggaaagaggaatggagggaggatag
gattaagcttcatcgtctcacccatggtcttctccgtcaacgtcctcctt
tccacaagGTCTGCGGCTCCAATGTCCAAGTCTGCTGGGAGAAAGgtaag
gagcgagaggattgggatgtacatctggccctttaaggcatcttggtttg
actcatcttctttccctctcccctcccttcctccctccttcctccctccc
tatagCCATGCGTTACTTCGAGGTCGAGGAGCGACTGGCCGACGTCTCGC
CGGACTGCCTGGTGCTGACGGCAGAAAGAGCCAAGCCGCTGATTGACGAA
AACACAATCGGCGTGTGTCCCATACTTGGCAGCACCTTCAATGGAGAGTT
CGAAGACGTGCAGGgtagggcgacggagggcgagggggagggataggggg
aggggacggaaaagaccaacaagtttggcgccatttttgcactcatgaat
gtaattttatctataaaacctcactttacagCGATCCATGACATGCTGGA
GGCGCTGAATGCGGAGACGGGGTGGGACGTGCCCATCCATGTGGACGCGG
CGAGTGGGGGCTTCATTGgtaggtgacccgtagggagtatgtggaaagtc
tgtggagagtctgtggggagtctgttgtgagtcgatcaggcggggatgta
gaggagggagggttgtagaggaggagcagggaggcagtcagtcgcctcag
gccactggtgctgactctggcattgatggcctacacacacagcgcccttc
cctgacccgccctgacactcacacgtacagCGCCGTTCATCAATCCGGAC
TTGGTGTGGGACTTCCGGCTGCCGCTGGTCAAGAGCATCAACGCCTCGGG
GCACAAATTTGGgtgcgtagcgggggagagagggaagggggggcgggaag
gaaggggggaagagtgaagaagattgtgtgatgtcagggaggcctcatgt
gtccatcttattcccatcccgccttcgtcagGCTCGTGTATGCCGGCGTG
GGCTGGCTGTGCTTTCGGGAGAAACCGGCCCTGCAGCAGGAGCTGACTTT
TACCGTCGACTACCTGGGAGGGTCCCAGTCGTCCATgtaagggaataggg
agtgagggacgggtggtgagggatgggcagtaaaggatggacagtgagga
aaagggaaagggtagatggatgggggcatgggctgtgtgtcaagaaaggg
aggcaggccggtgaggtccggggctgtttctgcctccgcctcagcaggga
cattagccggtaccaagtcattcgatcttttaatgtcgcattcgccatgg
cttggcgcgcattgacagGACGCTTAATTTCTCCCGGGGGGCATCGCAGC
TGGTGGGCCAGTACTAgtaagtggcggggagggacagagacaaaaaggaa
gacgagatcttccactttcttcttttcgttccgagccacaatcaacacat
tccttccttcccccttccccactttatcttgattccgtcctcctttcctc
cctcacaccctctctcagCAACTTCCTGAGGCTCGGCAAGGAGGGCTATC
GCGAGGTGATGACCAATGCCATGGAGAACGCTCGCTACCTCCGAGAGGCG
CTCTTGGCGACGGGCAAGgtaagggagggaggagggcggaagggagacag
gagagaaggctgcgtgttgaaaagatggcatatgaatcaagggtgcaagc
aaccaataaggctggttatcccactgcactacacaccgcagGTGGAGATC
GTGGACAAGGAGCACATGCCTCTGGTCGCCTTCGCGCTCAAGCCTAACCT
GGACATCCTCTACACGGTCTTCGAGATCCAGGACAAGCTGCGGGAGCGCG
Ggtaggaaggaatagagggagcgagggattggaagaggacaacgataaag
gaatgaaagtgaaaacggaaattcacacacaaatacacacattcatacat
attttgagaattcacgcctacaggtgctctacatatttatccatgtacac
atttactcacacacatacacacatatatattcactcattcatttacatat
gtatgtacattcatctatacaccagCTGGATTATTCCCGCCTACCGCTGC
TCCAAGGGTGCCGAGAAGCTGTGCATCATGCGCGTGgtaaggtgccggtg
cgagggagggaagcagagaggaaagtatgtgtgagttgctcacacatcgc
cacctttcatacatgattgttcctcatagGTGGTGAAGGAGAACTTCTCC
CGAGATCTGGCCGAGCTGTTGGTGGACGACTTTCAGAAGGCGATGGCCTA
CTTGGACAAGGATCACAAGGCACAGCAGgttggagagataaaacgagggg
ggaaggtctatcgcgatctcaacactccgttcgatttattcacaccatgt
tgcacactctgtacaccctctaccctctactctcttctccatcaaccagG
ACCTCATCACAAAGGCGCGGGAGATGGGGGCAAGCCAGGCCCACCACATG
GCGGACATAGTGGAGACGCTCAGGGGGAGAGCGAGGCGGGCCCGCAACAT
CTTCCACGACGACGCGCACCGCGCGGAAGGGAAGGCGACGAAGGGGGTTT
GTTAAACAAAACAGGATATGAGGGGGTTCGGGTCGGGGGTCGACATGAAG
AAACTTGGAAGATGTTTGGTGTGAGTTTTTCGCGGGGGATTGAAAGGAGG
TATTGAAAGACACAAAGACATGGAGTTAGGAGGTATTGAAAGACACAAAG
ACATGGAGTTAGAGGAGAAATGACATGCATAACAATTATAGTGAAATTAG
GTGCCTGGTGACAGTGGCAATGAAGGCCCTTGTGGAGGGAGTACAGAAAA
TACGTATCCATGCGACTAGTTCCCTGCATGGCGGGAAAAAAGGAAAAGAT
GAAAGGCAGGGCAAGCCACAAAATCAAATGAAGACGTAGTACGACCAACT
CCAGATCGCTCTCGGGTCTTCAGTTGCAGGCCT
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protein sequence of NO02G06190.2

>NO02G06190.2-protein ID=NO02G06190.2-protein|Name=NO02G06190.2|organism=Nannochloropsis oceanica|type=polypeptide|length=426bp
MASLDERLVDSSSSQTPPHPLNRQSTISQPSEVTYGYSYGYAYCARTMRK
SIPKHELPDTPLPANVVKTLIDDEMILDGTPRMNLATFVTTYMEKECEEL
MMDAARKNYIDIDEYPQTYEIQKRCVNMLSRLWHAPLEPEEDATGTSTVG
SSEAIMLAVLNMKWAWRKKRIAQGKPHDKPNLVCGSNVQVCWEKAMRYFE
VEERLADVSPDCLVLTAERAKPLIDENTIGVCPILGSTFNGEFEDVQAIH
DMLEALNAETGWDVPIHVDAASGGFIAPFINPDLVWDFRLPLVKSINASG
HKFGLVYAGVGWLCFREKPALQQELTFTVDYLGGSQSSMTLNFSRGASQL
VGQYYNFLRLGKEGYREVMTNAMENARYLREALLATGKVEIVDKEHMPLV
AFALKPNLDILYTVFEIQDKLRERG*
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protein sequence of NO02G06190.1

>NO02G06190.1-protein ID=NO02G06190.1-protein|Name=NO02G06190.1|organism=Nannochloropsis oceanica|type=polypeptide|length=530bp
MASLDERLVDSSSSQTPPHPLNRQSTISQPSEVTYGYSYGYAYCARTMRK
SIPKHELPDTPLPANVVKTLIDDEMILDGTPRMNLATFVTTYMEKECEEL
MMDAARKNYIDIDEYPQTYEIQKRCVNMLSRLWHAPLEPEEDATGTSTVG
SSEAIMLAVLNMKWAWRKKRIAQGKPHDKPNLVCGSNVQVCWEKAMRYFE
VEERLADVSPDCLVLTAERAKPLIDENTIGVCPILGSTFNGEFEDVQAIH
DMLEALNAETGWDVPIHVDAASGGFIAPFINPDLVWDFRLPLVKSINASG
HKFGLVYAGVGWLCFREKPALQQELTFTVDYLGGSQSSMTLNFSRGASQL
VGQYYNFLRLGKEGYREVMTNAMENARYLREALLATGKVEIVDKEHMPLV
AFALKPNLDILYTVFEIQDKLRERGWIIPAYRCSKGAEKLCIMRVVVKEN
FSRDLAELLVDDFQKAMAYLDKDHKAQQDLITKAREMGASQAHHMADIVE
TLRGRARRARNIFHDDAHRAEGKATKGVC*
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Synonyms
Publications