NO02G05340, NO02G05340 (gene) Nannochloropsis oceanica

Overview
NameNO02G05340
Unique NameNO02G05340
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1467
Alignment locationchr2:1430059..1431525 -

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Properties
Property NameValue
Descriptionplant U-box 24
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1430059..1431525 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0004842ubiquitin-protein transferase activity
Vocabulary: Biological Process
TermDefinition
GO:0016567protein ubiquitination
Vocabulary: INTERPRO
TermDefinition
IPR003613Ubox_domain
Homology
BLAST of NO02G05340 vs. NCBI_GenBank
Match: OIW28303.1 (U-box-domain-containing protein [Coniochaeta ligniaria NRRL 30616])

HSP 1 Score: 70.1 bits (170), Expect = 2.200e-8
Identity = 35/71 (49.30%), Postives = 48/71 (67.61%), Query Frame = 0
Query:  378 AADAYDEDDDAPEPFLDPLTMEVMVDPALTPSGYSYERAVIVEQIRRRGVDPMTQQPLAEEDLRPNRALRE 449
            A  A D     P   +D ++ EVMVDP +T +G SYERA I+E +RR+  DP+T++PL+  DLRPN AL+E
Sbjct:   11 ARSAEDRRRTVPGWAIDDISFEVMVDPVITKTGKSYERASIMEHLRRKPTDPLTREPLSIADLRPNLALKE 81          
BLAST of NO02G05340 vs. NCBI_GenBank
Match: KKP07381.1 (STIP1 likey and U-box containing protein 1 [Trichoderma harzianum])

HSP 1 Score: 69.7 bits (169), Expect = 2.800e-8
Identity = 30/62 (48.39%), Postives = 46/62 (74.19%), Query Frame = 0
Query:  387 DAPEPFLDPLTMEVMVDPALTPSGYSYERAVIVEQIRRRGVDPMTQQPLAEEDLRPNRALRE 449
            + P+  +D ++ ++MVDP +T +G SYERA I+E +RR   DP+T++PL+  DLRPN ALR+
Sbjct:  194 EVPDWAIDDISFDIMVDPVITKTGKSYERATIMEHLRRHPSDPLTREPLSASDLRPNLALRQ 255          
BLAST of NO02G05340 vs. NCBI_GenBank
Match: OPB47169.1 (hypothetical protein A0O28_0072930 [Trichoderma guizhouense])

HSP 1 Score: 69.7 bits (169), Expect = 2.800e-8
Identity = 30/62 (48.39%), Postives = 46/62 (74.19%), Query Frame = 0
Query:  387 DAPEPFLDPLTMEVMVDPALTPSGYSYERAVIVEQIRRRGVDPMTQQPLAEEDLRPNRALRE 449
            + P+  +D ++ ++MVDP +T +G SYERA I+E +RR   DP+T++PL+  DLRPN ALR+
Sbjct:  194 EVPDWAIDDISFDIMVDPVITKTGKSYERATIMEHLRRHPSDPLTREPLSASDLRPNLALRQ 255          
BLAST of NO02G05340 vs. NCBI_GenBank
Match: XP_002549596.1 (predicted protein [Candida tropicalis MYA-3404] >EER32222.1 predicted protein [Candida tropicalis MYA-3404])

HSP 1 Score: 69.3 bits (168), Expect = 3.700e-8
Identity = 30/73 (41.10%), Postives = 52/73 (71.23%), Query Frame = 0
Query:  383 DEDDDAPEPFLDPLTMEVMVDPALTPSGYSYERAVIVEQIRRRG-VDPMTQQPLAEEDLRPNRALREMIGLWR 455
            D+D++APE  LDP++ E+  DP +TPSG +YE++ +++ ++ RG  DP+T+Q L E+ L PN  +++ I  +R
Sbjct:  157 DDDEEAPEYLLDPISFELFTDPVITPSGITYEKSHLLDHLKNRGKFDPITRQELTEDQLYPNLIMKDTIEAYR 229          
BLAST of NO02G05340 vs. NCBI_GenBank
Match: XP_013952206.1 (hypothetical protein TRIVIDRAFT_159562 [Trichoderma virens Gv29-8] >EHK18006.1 hypothetical protein TRIVIDRAFT_159562 [Trichoderma virens Gv29-8])

HSP 1 Score: 69.3 bits (168), Expect = 3.700e-8
Identity = 30/62 (48.39%), Postives = 46/62 (74.19%), Query Frame = 0
Query:  387 DAPEPFLDPLTMEVMVDPALTPSGYSYERAVIVEQIRRRGVDPMTQQPLAEEDLRPNRALRE 449
            + P+  +D ++ ++MVDP +T +G SYERA I+E +RR   DP+T++PL+  DLRPN ALR+
Sbjct:  194 EVPDWAIDDISFDIMVDPVITKTGKSYERATIMEHLRRHPSDPLTREPLSAADLRPNLALRQ 255          
BLAST of NO02G05340 vs. NCBI_GenBank
Match: XP_013331085.1 (U-box domain protein [Rasamsonia emersonii CBS 393.64] >KKA24473.1 U-box domain protein [Rasamsonia emersonii CBS 393.64])

HSP 1 Score: 69.3 bits (168), Expect = 3.700e-8
Identity = 31/60 (51.67%), Postives = 44/60 (73.33%), Query Frame = 0
Query:  389 PEPFLDPLTMEVMVDPALTPSGYSYERAVIVEQIRRRGVDPMTQQPLAEEDLRPNRALRE 449
            P+  +D ++ EVM DP +TPSG+S++R  IV  I R GVDP+T+ P+  +DLRPN AL+E
Sbjct:  210 PDYLIDGISFEVMHDPVITPSGHSFDRVNIVRHIERAGVDPITRVPMTVDDLRPNYALKE 269          
BLAST of NO02G05340 vs. NCBI_GenBank
Match: XP_018034268.1 (U-box-domain-containing protein [Paraphaeosphaeria sporulosa] >OAG03903.1 U-box-domain-containing protein [Paraphaeosphaeria sporulosa])

HSP 1 Score: 69.3 bits (168), Expect = 3.700e-8
Identity = 30/62 (48.39%), Postives = 44/62 (70.97%), Query Frame = 0
Query:  387 DAPEPFLDPLTMEVMVDPALTPSGYSYERAVIVEQIRRRGVDPMTQQPLAEEDLRPNRALRE 449
            + P+  +D +T EVM DP +T +G SYERA I+E ++R   DP+T++PL   +LRPN AL+E
Sbjct:  214 EVPDYLIDGITFEVMTDPVVTKNGRSYERATIIEHLKRSATDPLTREPLTINELRPNIALKE 275          
BLAST of NO02G05340 vs. NCBI_GenBank
Match: PNP55506.1 (hypothetical protein THARTR1_04336 [Trichoderma harzianum])

HSP 1 Score: 69.3 bits (168), Expect = 3.700e-8
Identity = 30/62 (48.39%), Postives = 46/62 (74.19%), Query Frame = 0
Query:  387 DAPEPFLDPLTMEVMVDPALTPSGYSYERAVIVEQIRRRGVDPMTQQPLAEEDLRPNRALRE 449
            + P+  +D ++ ++MVDP +T +G SYERA I+E +RR   DP+T++PL+  DLRPN ALR+
Sbjct:  149 EVPDWAIDDISFDIMVDPVITKTGKSYERATIMEHLRRHPSDPLTREPLSAADLRPNLALRQ 210          
BLAST of NO02G05340 vs. NCBI_GenBank
Match: EPS28130.1 (hypothetical protein PDE_03076 [Penicillium oxalicum 114-2])

HSP 1 Score: 68.9 bits (167), Expect = 4.800e-8
Identity = 30/59 (50.85%), Postives = 45/59 (76.27%), Query Frame = 0
Query:  389 PEPFLDPLTMEVMVDPALTPSGYSYERAVIVEQIRRRGVDPMTQQPLAEEDLRPNRALR 448
            P+  +D +T E+M DP +TPSG S++RA IV+ I + GVDP+T++P+  +DLRPN AL+
Sbjct:  210 PDYLIDGITFEIMHDPVMTPSGTSFDRAGIVKYIEKSGVDPLTREPMTVKDLRPNYALK 268          
BLAST of NO02G05340 vs. NCBI_GenBank
Match: CEJ81436.1 (hypothetical protein VHEMI01558 [Torrubiella hemipterigena])

HSP 1 Score: 68.9 bits (167), Expect = 4.800e-8
Identity = 32/61 (52.46%), Postives = 43/61 (70.49%), Query Frame = 0
Query:  387 DAPEPFLDPLTMEVMVDPALTPSGYSYERAVIVEQIRRRGVDPMTQQPLAEEDLRPNRALR 448
            + P+  +D ++  VMVDP +T +G SYERA I E +RR   DP+T++PL  EDLRPN ALR
Sbjct:  196 EVPDWLIDDISFGVMVDPVITKTGKSYERASITEHLRRHPSDPLTREPLTMEDLRPNMALR 256          
The following BLAST results are available for this feature:
BLAST of NO02G05340 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
OIW28303.12.200e-849.30U-box-domain-containing protein [Coniochaeta ligni... [more]
KKP07381.12.800e-848.39STIP1 likey and U-box containing protein 1 [Tricho... [more]
OPB47169.12.800e-848.39hypothetical protein A0O28_0072930 [Trichoderma gu... [more]
XP_002549596.13.700e-841.10predicted protein [Candida tropicalis MYA-3404] >E... [more]
XP_013952206.13.700e-848.39hypothetical protein TRIVIDRAFT_159562 [Trichoderm... [more]
XP_013331085.13.700e-851.67U-box domain protein [Rasamsonia emersonii CBS 393... [more]
XP_018034268.13.700e-848.39U-box-domain-containing protein [Paraphaeosphaeria... [more]
PNP55506.13.700e-848.39hypothetical protein THARTR1_04336 [Trichoderma ha... [more]
EPS28130.14.800e-850.85hypothetical protein PDE_03076 [Penicillium oxalic... [more]
CEJ81436.14.800e-852.46hypothetical protein VHEMI01558 [Torrubiella hemip... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL018nonsL018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR003ngnoR003Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007218NSK007218Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G05340.1NO02G05340.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|522950gene_1124Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100115g18gene511Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G05340.1NO02G05340.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G05340 ID=NO02G05340|Name=NO02G05340|organism=Nannochloropsis oceanica|type=gene|length=1467bp
ATGGGTGGGTACTCCTCCAAGTCGGCTAATCGTGGTGGATGCTGCAATCC
TCGCGAGCGCGCTTTCCTTCTCGTGTGTTGGGATGCCGCATTTTTGAATC
GCATGATGCGAACGCCAAATGCCACCGCTGCCGACCTCGAGGAAGGCCCA
AGCAGCACTGCTAGTCCTGCGGACATGAGCCAAATTTTCGCCGTGGCTCC
GCCACCGGTCGTGGACGCTCGCCGTCTCCTAAGCTTAGTCGAAGGTAGCC
ACAACACCCAGCCACCCCCTACCTCTCGCTTCCCATCCGGCACACCCTTT
TCCCGATGGGTGCGCGCCCGCCTCGTCCTCTTTACCCCTGATCTCTCTGC
TTCTCTTGCGCAGCTCCACCAAAACACACGCTTGTGGCACATTTTCCGTC
GTCGACTCTATGTCCCCATTCTGGGCCCACGAGAATTACAAGCTCAGTTT
GTAAATGGTGCTCTGCACCGGTTCCAACGTCGCTCCCGTCGGCGTGGGCC
AGGCGTCATAGTCCTCGTCGCCGGAGACGGCAGCCTGGAAGCCATCCCTA
GTTTTGCTGCCTCTCTGCGGGCAATGCTTCGATGGGGACACAGGTTGGAG
ATCTGGTCTTGGGATGGAATGGTTCCATCGCTGTACAAGGAGCTAGCGAG
TGAAGTGGCGGAAGGGAAGGTGCAAGTGAGGTACCTGAACGACCATCGAC
CGGCCATTCGCTATCAGACAGGAGGGCGAGGAAGCACTGGTGCTGGTATT
GGTGCTGGTATTGGTCTTGATGCTGCAGCTGAAGGCGGTGGAGGGTCTTC
CTTACTGACGCCGCCATCGAATGCTGCCGCGTTGCCGGTAGCGATGCCCA
TGGCCGTTCCTGTTGAGGGAGGTAGAGGAGGAGGAGGAGGAGGAGGAGGA
GAAGAAGAAGAAGAGGGAGGCACATTTGCTGTTGCTCGCCCTCACAATAC
GGCGCAATTCCCTCTGGAGAAAGACGACGGTGGTGGGGCGGATCAAGCTG
CAGCTGCTATGGCGGGGTTAGAGATAGGGGAGGACGGGGACGTGGTGGAA
AGGGAGGGAGGTGTGGAGGGCGTAGAGGAAGACGATTCAAGCAGTGATGA
TGAGACGGGCCAGCGGCAGCAAACGGGCAACGCTGCTGATGCCTACGATG
AGGATGACGATGCTCCTGAGCCTTTCTTGGATCCGTTGACCATGGAAGTG
ATGGTAGACCCGGCATTAACGCCATCGGGGTACTCGTATGAGAGGGCGGT
GATTGTCGAGCAGATCCGACGGAGGGGTGTGGATCCCATGACACAGCAGC
CGTTGGCGGAGGAGGATTTGAGGCCGAACAGGGCGTTGAGAGAGATGATC
GGATTGTGGAGATTGCGACAGAGGCAGCAGCAGGAGCAGCAGTCGCATGC
GGGGAGGCAAGCGCGGGAGTTCGAGGGGGAGGGAGGGGGAGAGGGGGAGA
GTGAAGGTCGAGGGTGA
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protein sequence of NO02G05340.1

>NO02G05340.1-protein ID=NO02G05340.1-protein|Name=NO02G05340.1|organism=Nannochloropsis oceanica|type=polypeptide|length=489bp
MGGYSSKSANRGGCCNPRERAFLLVCWDAAFLNRMMRTPNATAADLEEGP
SSTASPADMSQIFAVAPPPVVDARRLLSLVEGSHNTQPPPTSRFPSGTPF
SRWVRARLVLFTPDLSASLAQLHQNTRLWHIFRRRLYVPILGPRELQAQF
VNGALHRFQRRSRRRGPGVIVLVAGDGSLEAIPSFAASLRAMLRWGHRLE
IWSWDGMVPSLYKELASEVAEGKVQVRYLNDHRPAIRYQTGGRGSTGAGI
GAGIGLDAAAEGGGGSSLLTPPSNAAALPVAMPMAVPVEGGRGGGGGGGG
EEEEEGGTFAVARPHNTAQFPLEKDDGGGADQAAAAMAGLEIGEDGDVVE
REGGVEGVEEDDSSSDDETGQRQQTGNAADAYDEDDDAPEPFLDPLTMEV
MVDPALTPSGYSYERAVIVEQIRRRGVDPMTQQPLAEEDLRPNRALREMI
GLWRLRQRQQQEQQSHAGRQAREFEGEGGGEGESEGRG*
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Synonyms
Publications