NO02G04890, NO02G04890 (gene) Nannochloropsis oceanica

Overview
NameNO02G04890
Unique NameNO02G04890
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1391
Alignment locationchr2:1317472..1318862 -

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Properties
Property NameValue
DescriptionApaG domain protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1317472..1318862 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036767ApaG_sf
IPR007474ApaG_domain
Homology
BLAST of NO02G04890 vs. NCBI_GenBank
Match: EWM30192.1 (ApaG domain protein [Nannochloropsis gaditana])

HSP 1 Score: 248.1 bits (632), Expect = 3.900e-62
Identity = 191/268 (71.27%), Postives = 215/268 (80.22%), Query Frame = 0
Query:    1 MVHVISKDHSRLVKCLYRQLLRDARRVKHSRAPFLFLQERPSRERYSHLWEVTPDHDARLLDAFLPSYLRHELTTCELKSHEMERIVKANFRRFRNLGVAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEVIDDCMTLTRLMSEQLRLFECTSVTDSFGVRVIATA-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNIRVENRNRKATVQLVGRHWVIQDNEGKESDSVPKGSIG 268
            M H ISKDHSRLV CLYR LLRDARRV+HSRAPF+FLQERPSRERYSHLWE+TPD+DA +LD  LPSYLRHELTTCELK+ ++ERI+KANFRRFR+LG +                      XXXXXXXXXXXXXXXXXXXXX              D+V+DD M LTR M+EQL LFE TSVT+S+G+RVIATA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX IRVENRNR+A+VQL+GRHW+IQD +G+E+DSVPKGSIG
Sbjct:    1 MAHTISKDHSRLVFCLYRLLLRDARRVRHSRAPFVFLQERPSRERYSHLWEITPDYDANVLDNLLPSYLRHELTTCELKAQDLERIIKANFRRFRSLGTS------EESPNPRHQVPLPSGPXXXXXXXXXXXXXXXXXXXXXMRGANITPIPPPTLDQVLDDTMALTRTMAEQLSLFESTSVTESYGIRVIATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIRVENRNRRASVQLMGRHWIIQDEQGRETDSVPKGSIG 262          
BLAST of NO02G04890 vs. NCBI_GenBank
Match: XP_005853461.1 (hypothetical protein NGA_0456400, partial [Nannochloropsis gaditana CCMP526] >EKU22898.1 hypothetical protein NGA_0456400, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 246.1 bits (627), Expect = 1.500e-61
Identity = 189/279 (67.74%), Postives = 215/279 (77.06%), Query Frame = 0
Query:    1 MVHVISKDHSRLVKCLYRQLLRDARRVKHSRAPFLFLQERPSRERYSHLWEVTPDHDARLLDAFLPSYLRHELTTCELKSHEMERIVKANFRRFRNLGVAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEVIDDCMTLTRLMSEQLRLFECTSVTDSFGVRVIATA-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNIRVENRNRKATVQLVGRHWVIQDNEGKESDSVPKGSIGVVGHEPVLRPG 279
            M H ISKDHSRLV CLYR LLRDARRV+HSRAPF+FLQERPSRERYSHLWE+TPD+DA +LD  LPSYLRHELTTCELK+ ++ERI+KANFRRFR+LG +                        XXXXXXXXXXXXXXXXX                D+V+DD M LTR M+EQL LFE TSVT+S+G+RVIATA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX IRVENRNR+A+VQL+GRHW+IQD +G+E+DSVPKGSI  +   P+L  G
Sbjct:   74 MAHTISKDHSRLVFCLYRLLLRDARRVRHSRAPFVFLQERPSRERYSHLWEITPDYDANVLDNLLPSYLRHELTTCELKAQDLERIIKANFRRFRSLGTS------EESPNPKHHVTLPSGPPAXXXXXXXXXXXXXXXXXSRMRGANIMPIPPPTLDQVLDDTMALTRTMAEQLSLFESTSVTESYGIRVIATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIRVENRNRRASVQLMGRHWIIQDEQGRETDSVPKGSIAPL---PILSIG 343          
BLAST of NO02G04890 vs. NCBI_GenBank
Match: XP_005819915.1 (hypothetical protein GUITHDRAFT_120886 [Guillardia theta CCMP2712] >EKX32935.1 hypothetical protein GUITHDRAFT_120886 [Guillardia theta CCMP2712])

HSP 1 Score: 87.0 bits (214), Expect = 1.100e-13
Identity = 49/102 (48.04%), Postives = 65/102 (63.73%), Query Frame = 0
Query:  230 IRVENRNRKATVQLVGRHWVIQDNEGKESDSVPKGSIGVVGHEPVLRPGQTIVYMSGAKLPTPYGSMQGSFQMV----KKMGEGNSVPDK-FDARVSPFVLK 327
            I ++N + + TVQL+GR W I D  G  S SVPKG+ GVVG  PVL+PGQ   Y SG +L T  G M GSFQM     ++ G+ ++  D+ FDA V+PF L+
Sbjct:  125 ITIDNESEQ-TVQLIGRQWEILDETGAISGSVPKGTHGVVGMTPVLKPGQRFEYHSGVELTTKEGRMSGSFQMAVVGEEQEGDSDNGDDELFDAIVAPFALR 225          
BLAST of NO02G04890 vs. NCBI_GenBank
Match: XP_009032893.1 (hypothetical protein AURANDRAFT_8566, partial [Aureococcus anophagefferens] >EGB12296.1 hypothetical protein AURANDRAFT_8566, partial [Aureococcus anophagefferens])

HSP 1 Score: 85.9 bits (211), Expect = 2.600e-13
Identity = 46/96 (47.92%), Postives = 61/96 (63.54%), Query Frame = 0
Query:  230 IRVENRNRKATVQLVGRHWVIQDNEGKESDSVPKGSIGVVGHEPVLRPGQTIVYMSGAKLPTPYGSMQGSFQMVKKMGEGNSVPDKFDARVSPFVL 326
            +R++N  R  TVQL  RHWVI D +G E + VPKGS GVVG  P L PG    Y SG +L  P G+++GSF+ V  +G+G++    F+A V PF L
Sbjct:    6 LRIKN-ERDDTVQLRSRHWVIADEDGAEDEVVPKGSHGVVGQTPTLAPGAEFQYASGTELRGPKGAIRGSFEFV-SVGDGST----FEAEVRPFAL 95          
BLAST of NO02G04890 vs. NCBI_GenBank
Match: XP_005648324.1 (hypothetical protein COCSUDRAFT_53459 [Coccomyxa subellipsoidea C-169] >EIE23780.1 hypothetical protein COCSUDRAFT_53459 [Coccomyxa subellipsoidea C-169])

HSP 1 Score: 85.1 bits (209), Expect = 4.400e-13
Identity = 56/168 (33.33%), Postives = 80/168 (47.62%), Query Frame = 0
Query:  159 EVIDDCMTLTRLMSEQLRLFECTSVTDSFGVRVIATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNIRVENRNRKATVQLVGRHWVIQDNEGKESDSVPKGSIGVVGHEPVLRPGQTIVYMSGAKLPTPYGSMQGSFQMVKKMGEGNSVPDKFDARVSPFVLK 327
            +++D      R+++EQ  L +C++V  + GV V  T                                    RVEN   K  VQL+GR W+I  +EG +   VP+GS GVVG  P+L PG+   Y S   L TP G+M+GS+QMV ++G GN     FDA +    L+
Sbjct:  101 QLLDTGFDALRVLAEQYTLEQCSAVATTNGVHVEITT----------ACIGSKIPLDLIETPTARPVWTYRCRVENVGEK-KVQLLGRQWLILTSEGLQHAVVPRGSTGVVGCTPILHPGECFQYYSATDLSTPSGTMKGSYQMV-ELGPGNKPNVPFDAVIPTVALR 256          
BLAST of NO02G04890 vs. NCBI_GenBank
Match: PRW20169.1 (hypothetical protein C2E21_9247 [Chlorella sorokiniana])

HSP 1 Score: 85.1 bits (209), Expect = 4.400e-13
Identity = 62/166 (37.35%), Postives = 78/166 (46.99%), Query Frame = 0
Query:  161 IDDCMTLTRLMSEQLRLFECTSVTDSFGVRV-IATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNIRVENRNRKATVQLVGRHWVIQDNEGKESDSVPKGSIGVVGHEPVLRPGQTIVYMSGAKLPTPYGSMQGSFQM--VKKMGEGNSVPDKFDARVSPF 324
            +D      RL+++Q+ L E TS   + GV V ++TA                                  IRV N   + TVQL+GRHW+I D  GK    VPKGS GVVG  P+++PG    Y SG  L TP GSM+GSFQM  V            FDA V+PF
Sbjct:  102 LDQAFESLRLLADQVALDEATSSCTTDGVHVEVSTA------HMGSQAELDPLYDDEDDGSPKKHYWTYRIRVSNLGSE-TVQLLGRHWLISDPSGKIVTEVPKGSRGVVGCTPLIKPGDCFQYYSGTDLETPGGSMRGSFQMAVVDPKKPHAQWLRTFDAEVAPF 260          
BLAST of NO02G04890 vs. NCBI_GenBank
Match: XP_005844103.1 (hypothetical protein CHLNCDRAFT_139531 [Chlorella variabilis] >EFN52001.1 hypothetical protein CHLNCDRAFT_139531 [Chlorella variabilis])

HSP 1 Score: 83.6 bits (205), Expect = 1.300e-12
Identity = 49/96 (51.04%), Postives = 57/96 (59.38%), Query Frame = 0
Query:  230 IRVENRNRKATVQLVGRHWVIQDNEGKESDSVPKGSIGVVGHEPVLRPGQTIVYMSGAKLPTPYGSMQGSFQM--VKKMGEGNSVPDKFDARVSPF 324
            IRV N   + TVQL+GRHW+IQD  GK    V KGS GVVG  P+L PG    Y SG  L  P GSM+GSFQM  V +    +     FDA V+PF
Sbjct:  158 IRVSNCGEE-TVQLLGRHWIIQDASGKVLTEVAKGSRGVVGCTPLLEPGACFEYYSGTDLDQPCGSMRGSFQMAVVNQRKPQDKWVRTFDALVAPF 252          
BLAST of NO02G04890 vs. NCBI_GenBank
Match: GAY02393.1 (Hypothetical protein PINS_010238 [Pythium insidiosum])

HSP 1 Score: 83.6 bits (205), Expect = 1.300e-12
Identity = 51/167 (30.54%), Postives = 80/167 (47.90%), Query Frame = 0
Query:  161 IDDCMTLTRLMSEQLRLFECTSVTDSFGVRVIATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNIRVENRNRKATVQLVGRHWVIQDNEGKESDSVPKGSIGVVGHEPVLRPGQTIVYMSGAKLPTPYGSMQGSFQMVKKMGEGNS-VPDKFDARVSPFVLK 327
            +DD +      SEQL L EC+S+T + G+R+ AT+                                  + + N N   TVQ+ GR +  +   G +  ++P+ S G+VG+ PVL+PGQT  Y SG  + +P G + G   +V++  + +S   D FDA VS F L+
Sbjct:  114 LDDAIAALHEXSEQLMLAECSSITVTNGIRIEATS---------------QFVPTHSNPEQNLYRYTYRVTITNENEXDTVQITGRQYTFESERG-QRXALPRNSPGIVGNTPVLQPGQTFEYASGVDIDSPRGFVTGCLHVVRRGDDTSSDAVDSFDAYVSKFXLR 264          
BLAST of NO02G04890 vs. NCBI_GenBank
Match: PSC74841.1 (Co2+ Mg2+ efflux [Micractinium conductrix])

HSP 1 Score: 83.6 bits (205), Expect = 1.300e-12
Identity = 56/168 (33.33%), Postives = 81/168 (48.21%), Query Frame = 0
Query:  158 DEVIDDCMTLTRLMSEQLRLFECTSVTDSFGVRVIATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNIRVENRNRKATVQLVGRHWVIQDNEGKESDSVPKGSIGVVGHEPVLRPGQTIVYMSGAKLPTP-YGSMQGSFQM-VKKMGEGNSVPDKFDARVSPF 324
            D+ ID      RL+SEQ+++  C+S  ++ GV V  T                                   +RV N   K  VQL+GRHW+I++++G+    V +GS GVVG  P+++PG+   Y SG  +  P  G+M GSFQM V        V  KFDA ++PF
Sbjct:   99 DDRIDWAFQSLRLLSEQIQMQRCSSSAETEGVHVEVTT------AHVGSQGELDPTFDPDEEGPEKEFYTYRVRVSNCG-KDVVQLLGRHWIIENDKGEVVAEVARGSTGVVGCTPIIKPGECFSYYSGTDVEPPGRGAMHGSFQMAVVDPQRPQQVLRKFDAEIAPF 259          
BLAST of NO02G04890 vs. NCBI_GenBank
Match: ACU26431.1 (uncharacterized protein [uncultured bacterium HF186_75m_14K15] >ACU26490.1 uncharacterized protein [uncultured bacterium HF186_25m_13D19])

HSP 1 Score: 83.2 bits (204), Expect = 1.700e-12
Identity = 44/86 (51.16%), Postives = 55/86 (63.95%), Query Frame = 0
Query:  240 TVQLVGRHWVIQDNEGKESDSVPKGSIGVVGHEPVLRPGQTIVYMSGAKLPTPYGSMQGSFQMVKKMGEGNSVPDKFDARVSPFVL 326
            TVQLV RHWVI D E K  +   KG  GVVG +P+LRP ++  Y S   L TP G+MQG++QM+ K GEG      FDA ++PF L
Sbjct:   56 TVQLVSRHWVITDGENKVEE--VKGP-GVVGDQPILRPSESYEYTSACPLSTPVGTMQGTYQMISKSGEG------FDAVIAPFTL 132          
The following BLAST results are available for this feature:
BLAST of NO02G04890 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM30192.13.900e-6271.27ApaG domain protein [Nannochloropsis gaditana][more]
XP_005853461.11.500e-6167.74hypothetical protein NGA_0456400, partial [Nannoch... [more]
XP_005819915.11.100e-1348.04hypothetical protein GUITHDRAFT_120886 [Guillardia... [more]
XP_009032893.12.600e-1347.92hypothetical protein AURANDRAFT_8566, partial [Aur... [more]
XP_005648324.14.400e-1333.33hypothetical protein COCSUDRAFT_53459 [Coccomyxa s... [more]
PRW20169.14.400e-1337.35hypothetical protein C2E21_9247 [Chlorella sorokin... [more]
XP_005844103.11.300e-1251.04hypothetical protein CHLNCDRAFT_139531 [Chlorella ... [more]
GAY02393.11.300e-1230.54Hypothetical protein PINS_010238 [Pythium insidios... [more]
PSC74841.11.300e-1233.33Co2+ Mg2+ efflux [Micractinium conductrix][more]
ACU26431.11.700e-1251.16uncharacterized protein [uncultured bacterium HF18... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007168NSK007168Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G04890.1NO02G04890.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575259gene_1083Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100090g4gene472Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G04890.1NO02G04890.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G04890 ID=NO02G04890|Name=NO02G04890|organism=Nannochloropsis oceanica|type=gene|length=1391bp
ATGGTGCACGTCATCTCCAAGGACCATTCGCGTTTGGTCAAATGCCTCTA
TCGGCAGCTGCTTAGGGACGCCCGCAGGGTTAAGCATTCGCGGGCGCCTT
TCCTCTTCCTGCAGGAGCGCCCAAGTAGGGAAAGGTATTCGCACTTGTGG
GAAGTGACGCCCGACCACGATGCCAGGCTCCTAGACGCATTCCTGCCATC
ATACCTCCGGCACGAGCTAACAACATGCGAACTCAAGTCACATgtaagga
agaggttcaaggacagggggctcacattccttttctgcctcaaagatgac
cataaaaatttgagacccaacaacatatttgcagtgagacgtccactatc
acgggttggaagaacatctctacgaccctctggaatcccttatctgagac
ttcttcattcgtttcccgctcttatcaaaacaacgacctcacagGAGATG
GAACGCATCGTCAAGGCCAATTTCCGTCGCTTCCGCAACCTGGGCGTCGC
CGGGGCCTCTGCCTCTAACAGTGGCGGCAGCGGTAGCAGCAGAGAGTTCG
CAACACTTTCACCTTCCAATACCAGTAGCAGTAGTAGTAGTAGTGGCAGC
AGCAGGCGGGGCAGCAGGAACCGGAGCGGGGGCGCTTCTTCGGCGGCTTC
TGCTTCTCCGCCTCCGACGCTGGACGAAGTCATAGATGATTGCATGACTT
TGACGCGCCTCATGTCCGAGCAATTACGTTTGTTCGAATGCACGAGCGTC
ACGGACTCCTTTGGAGTGCGTGTCATTGCTACGGCCACCGCCGCCGTCGA
TGAGCAGCAGCGGCAGGAGCAGCAGCAACAACATCATCAAAGCTCTTCTT
CCACCCCGCAATCCCCTCCCCACTTCTTCTTCTATAACATCCGCGTCGAG
AATAGAAATCGGAAGGCGACGGTGCAGCTAGTGGGGAGACATTGGGTTAT
TCAGGATAATGAGGGAAAGGAGAGTGACTCGGTGCCCAAGGGAAGCATTG
gtatgttagacttaatgcctgatgtgatcacccatgtatacctcagactt
ccgttgaatgtctgaaatgtttgtcgtacacataaaatgaaggcctgtga
tatgggcagaacgcggaaagctttatcactttgacttcacaagtcttttc
gctttttatggtcctaacttatgcacgtcccccgtccatcctcccttctt
cacacgcagGGGTTGTGGGTCACGAGCCCGTCTTGCGACCAGGGCAAACG
ATAGTGTATATGAGCGGTGCCAAGCTGCCCACCCCATACGGCAGCATGCA
GGGCTCCTTTCAAATGGTCAAGAAGATGGGGGAAGGCAACAGTGTACCTG
ACAAGTTTGACGCACGGGTCAGCCCGTTTGTTCTCAAGTAG
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protein sequence of NO02G04890.1

>NO02G04890.1-protein ID=NO02G04890.1-protein|Name=NO02G04890.1|organism=Nannochloropsis oceanica|type=polypeptide|length=327bp
MVHVISKDHSRLVKCLYRQLLRDARRVKHSRAPFLFLQERPSRERYSHLW
EVTPDHDARLLDAFLPSYLRHELTTCELKSHEMERIVKANFRRFRNLGVA
GASASNSGGSGSSREFATLSPSNTSSSSSSSGSSRRGSRNRSGGASSAAS
ASPPPTLDEVIDDCMTLTRLMSEQLRLFECTSVTDSFGVRVIATATAAVD
EQQRQEQQQQHHQSSSSTPQSPPHFFFYNIRVENRNRKATVQLVGRHWVI
QDNEGKESDSVPKGSIGVVGHEPVLRPGQTIVYMSGAKLPTPYGSMQGSF
QMVKKMGEGNSVPDKFDARVSPFVLK*
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Synonyms
Publications