NO02G04670, NO02G04670 (gene) Nannochloropsis oceanica

Overview
NameNO02G04670
Unique NameNO02G04670
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3516
Alignment locationchr2:1255944..1259459 -

Link to JBrowse

Properties
Property NameValue
DescriptionRING/U-box superfamily protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:1255944..1259459 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013087Znf_C2H2/integrase_DNA-bd
Homology
[Close]
BLAST of NO02G04670 vs. NCBI_GenBank
Match: GAY00586.1 (Hypothetical protein PINS_008432 [Pythium insidiosum])

HSP 1 Score: 238.0 bits (606), Expect = 1.100e-58
Identity = 123/295 (41.69%), Postives = 170/295 (57.63%), Query Frame = 0 
Query:  129 EHGQPLTAVAVTPARKESIDGLVCAVCTEPLNSEIHRPAMGACEHVDTCALCYLRLRRLLGDQNCPMCKTPQDIVFIFDSPRDIKPFLALPIWGMDGGPGTVTDDASRTIMPKAFYQNVFQLLHAAVCRAPGCGLLCRSLPSLREHLQRAHERFVCDVCVEHKKAFLGEQTLYTRGELARHRDKGDASRGFFGHPACEFCKQQRFYDTGALYQHLVKNHYSCDLCERHAGIQHRYYRDYPDLERHFRQEHHLCEDPRCLAQRFVVFANPIDYQGHLLAAHPDQAPSSSRKLAVAF 424
            E  +P    +V  +RK+S+  L C +C   +++      +GAC H   C+LC LR+R+LLG   CP CK   D+  +     + + F +   WG + GP  V DDAS     K     V + L   +C  P C     ++ +L+ HLQ  H++  C +C+EHKK FL EQ L+T+ +L  H  KG+   GF GHP C+FC   RFY    L+ HL KNH+ CD+C R  G+Q+RYY+DYPDLE HFR EH LCE+P CLA++FVVF + ID+Q H+   HP      SRK+ V F
Sbjct:  693 EEKRPARKDSVASSRKDSM--LSCILCCHAIDNVTRFNTVGACGHTGCCSLCALRMRQLLGTTACPFCKA--DLPRVICVEHEHQTFDSFQDWGDNIGPTHVFDDASGMFFLKRDMPRV-RRLREPMC--PRCDKKLSTVAALKTHLQDVHQQQYCGICLEHKKVFLQEQELFTKEQLKAHAAKGNPREGFAGHPRCDFC-FSRFYSNTELFDHLHKNHFECDICVRSLGVQNRYYKDYPDLENHFRAEHFLCEEPSCLAKKFVVFKSHIDFQAHMATEHPH--IKISRKIDVHF 977
[Close]
BLAST of NO02G04670 vs. NCBI_GenBank
Match: XP_002903532.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >EEY55308.1 conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 223.0 bits (567), Expect = 3.800e-54
Identity = 112/279 (40.14%), Postives = 157/279 (56.27%), Query Frame = 0 
Query:  152 CAVCTEPLNSEIHRPAMGACEHVDTCALCYLRLRRLLGDQNCPMCKTPQDIVFIFDSPRDIKPFLALPIWGMDGGPGTVTDDASRTIMPKAFYQNVFQLLHAAVCRAPGCGLLCRSLPSLREHLQRAHERFVCDVCVEHKKAFLGEQTLYTRGELARHRDKGDASRGFFGHPACEFCKQQRFYDTGALYQHLVKNHYSCDLCERHAGIQHRYYRDYPDLERHFRQEHHLCEDPRCLAQRFVVFANPIDYQGHLLAAHPDQAPSSSRKLAVAFKFPDLSQ 431
            C +C   +++      +G C H   C++C LRLR+LLG  +C MCKT  D+  +     + + F +   WG + GP  V DD S     K  Y    + L   +C+   CG    ++ +LR H+  AH    C +C+E+KK FL E  L+T+ +L +H +KG+   GF GHP C+FC   RFY T  LY HL KNH+ CD+C     +Q+RYY+DY DLE HFR +H LCE+  CLA++FVVF + +D Q HL   HP     +SRK+ V F     SQ
Sbjct:    8 CVLCCNAIDNASRFNTVGVCNHSGCCSICALRLRQLLGQTSCVMCKT--DMPRVICISNEDQSFESFQDWGDNIGPSHVFDDTSGMFFLKEDYTKRIRKLRDPLCKK--CGKKFATVSALRTHVLDAHGLQYCSICLENKKVFLEELELFTKDQLKKHNNKGNPHEGFMGHPRCDFC-FSRFYSTTELYDHLRKNHFECDICLYQLNVQNRYYKDYNDLENHFRADHFLCEERECLAKKFVVFKSHLDLQAHLTVDHPH--IKTSRKIDVHFTVRRASQ 279
[Close]
BLAST of NO02G04670 vs. NCBI_GenBank
Match: XP_009535786.1 (Avr1b-1 avirulence-like protein [Phytophthora sojae] >EGZ09153.1 Avr1b-1 avirulence-like protein [Phytophthora sojae])

HSP 1 Score: 222.6 bits (566), Expect = 5.000e-54
Identity = 113/279 (40.50%), Postives = 158/279 (56.63%), Query Frame = 0 
Query:  152 CAVCTEPLNSEIHRPAMGACEHVDTCALCYLRLRRLLGDQNCPMCKTPQDIVFIFDSPRDIKPFLALPIWGMDGGPGTVTDDASRTIMPKAFYQNVFQLLHAAVCRAPGCGLLCRSLPSLREHLQRAHERFVCDVCVEHKKAFLGEQTLYTRGELARHRDKGDASRGFFGHPACEFCKQQRFYDTGALYQHLVKNHYSCDLCERHAGIQHRYYRDYPDLERHFRQEHHLCEDPRCLAQRFVVFANPIDYQGHLLAAHPDQAPSSSRKLAVAFKFPDLSQ 431
            C +C   +++      +G C H   C++C LRLR+LLG  +C MCKT  D+  +    R  + F +   WG + GP  V D+AS     K  Y    + L   +C+   CG    ++ +L+ H+   H+   C +C+E+KK FL E  L+T+  L RH  KG+   GF GHP C+FC   RFY T  LY+HL KNH+ CD+C     +Q+RYY+DY DLE HFR +H LCE+  CLA++FVVF + ID QGH+   HP     +SRK+ V F     SQ
Sbjct:    9 CVLCCNAIDNASRFNTVGVCNHPGCCSICALRLRQLLGQTSCVMCKT--DMPRVICLQRADQSFESFQDWGDNIGPVHVFDEASAMFFLKEDYAKRIRKLRDPLCKK--CGKKFATVAALKTHVLDVHQLQYCGICLENKKVFLEELELFTKEGLKRHNTKGNPHEGFMGHPRCDFC-FSRFYSTTELYEHLRKNHFECDICLYQLNVQNRYYKDYNDLENHFRADHFLCEERECLAKKFVVFKSHIDLQGHMATDHPH--IKTSRKIDVHFTVRRASQ 280
[Close]
BLAST of NO02G04670 vs. NCBI_GenBank
Match: OWZ08585.1 (Avirulence (Avh) protein [Phytophthora megakarya])

HSP 1 Score: 222.6 bits (566), Expect = 5.000e-54
Identity = 109/272 (40.07%), Postives = 155/272 (56.99%), Query Frame = 0 
Query:  152 CAVCTEPLNSEIHRPAMGACEHVDTCALCYLRLRRLLGDQNCPMCKTPQDIVFIFDSPRDIKPFLALPIWGMDGGPGTVTDDASRTIMPKAFYQNVFQLLHAAVCRAPGCGLLCRSLPSLREHLQRAHERFVCDVCVEHKKAFLGEQTLYTRGELARHRDKGDASRGFFGHPACEFCKQQRFYDTGALYQHLVKNHYSCDLCERHAGIQHRYYRDYPDLERHFRQEHHLCEDPRCLAQRFVVFANPIDYQGHLLAAHPDQAPSSSRKLAVAF 424
            C +C   +++      +G C H   C++C LRLR+LLG   C MCKT  D+  +    R+ + F +   WG + GP  V D+AS     K  +    + L   +C+   CG    ++ +LR H+   H    C +C+EHKK FL E  LYT+ +L +H +KG+   GF GHP C+FC   RFY T  LY HL KNH+ CD+C     +Q+RYY+DY DL+ HFR +H LCE+  CLA++FVVF + +D Q H+   HP     +SRK+ V F
Sbjct:    6 CVLCCNAIDNATRFNTVGVCNHPGCCSICALRLRQLLGQTACVMCKT--DMPRVICVEREDEAFESFQDWGDNIGPAHVFDEASGMFFLKEDFAKRIRKLRDPLCKK--CGKKFATVAALRTHVLDVHGLQYCSICLEHKKVFLEELDLYTKDQLKKHNNKGNPHEGFMGHPRCDFC-FSRFYSTTELYDHLRKNHFECDICLYQLNVQNRYYKDYNDLQNHFRADHFLCEERECLAKKFVVFKSHLDLQAHMTVDHPH--IKTSRKIDVHF 270
[Close]
BLAST of NO02G04670 vs. NCBI_GenBank
Match: ETI41150.1 (hypothetical protein F443_13592 [Phytophthora parasitica P1569])

HSP 1 Score: 219.9 bits (559), Expect = 3.200e-53
Identity = 110/279 (39.43%), Postives = 157/279 (56.27%), Query Frame = 0 
Query:  152 CAVCTEPLNSEIHRPAMGACEHVDTCALCYLRLRRLLGDQNCPMCKTPQDIVFIFDSPRDIKPFLALPIWGMDGGPGTVTDDASRTIMPKAFYQNVFQLLHAAVCRAPGCGLLCRSLPSLREHLQRAHERFVCDVCVEHKKAFLGEQTLYTRGELARHRDKGDASRGFFGHPACEFCKQQRFYDTGALYQHLVKNHYSCDLCERHAGIQHRYYRDYPDLERHFRQEHHLCEDPRCLAQRFVVFANPIDYQGHLLAAHPDQAPSSSRKLAVAFKFPDLSQ 431
            C +C   +++      +G C H   C++C LRLR+LLG  +C MCKT  D+  +     + + F +   WG + GP  V D+AS     K  Y    + L   +C+   CG    ++ +LR H+   H    C +C+E+KK FL E  L+T+ +L +H  KG+   GF GHP C+FC   RFY T  LY+HL KNH+ CD+C     +Q+RYY+DY DLE HFR +H LCE+  CLA++FVVF + +D Q H+   HP     +SRK+ V F     SQ
Sbjct:    8 CVLCCNAIDNASRFNTVGVCNHPGCCSICALRLRQLLGQTSCVMCKT--DMPRVICISNEEQTFESFQDWGDNIGPSHVFDEASGMFFLKEDYTKRIRKLRDPLCKK--CGKKFATVNALRTHVLDVHGVQYCSICLENKKVFLEELELFTKDQLKKHNTKGNPHEGFMGHPRCDFC-FSRFYSTTELYEHLRKNHFECDICLYQLNVQNRYYKDYNDLENHFRADHFLCEERECLAKKFVVFKSHLDLQAHMTVDHPH--IKTSRKIDVHFTVRRASQ 279
[Close]
BLAST of NO02G04670 vs. NCBI_GenBank
Match: ETK81216.1 (hypothetical protein L915_13265 [Phytophthora parasitica] >ETL34639.1 hypothetical protein L916_13152 [Phytophthora parasitica] >ETP10919.1 hypothetical protein F441_13524 [Phytophthora parasitica CJ01A1] >ETP39057.1 hypothetical protein F442_13450 [Phytophthora parasitica P10297])

HSP 1 Score: 219.9 bits (559), Expect = 3.200e-53
Identity = 110/279 (39.43%), Postives = 157/279 (56.27%), Query Frame = 0 
Query:  152 CAVCTEPLNSEIHRPAMGACEHVDTCALCYLRLRRLLGDQNCPMCKTPQDIVFIFDSPRDIKPFLALPIWGMDGGPGTVTDDASRTIMPKAFYQNVFQLLHAAVCRAPGCGLLCRSLPSLREHLQRAHERFVCDVCVEHKKAFLGEQTLYTRGELARHRDKGDASRGFFGHPACEFCKQQRFYDTGALYQHLVKNHYSCDLCERHAGIQHRYYRDYPDLERHFRQEHHLCEDPRCLAQRFVVFANPIDYQGHLLAAHPDQAPSSSRKLAVAFKFPDLSQ 431
            C +C   +++      +G C H   C++C LRLR+LLG  +C MCKT  D+  +     + + F +   WG + GP  V D+AS     K  Y    + L   +C+   CG    ++ +LR H+   H    C +C+E+KK FL E  L+T+ +L +H  KG+   GF GHP C+FC   RFY T  LY+HL KNH+ CD+C     +Q+RYY+DY DLE HFR +H LCE+  CLA++FVVF + +D Q H+   HP     +SRK+ V F     SQ
Sbjct:    8 CVLCCNAIDNASRFNTVGVCNHPGCCSICALRLRQLLGQTSCVMCKT--DMPRVICISNEEQTFESFQDWGDNIGPSHVFDEASGMFFLKEDYTKRIRKLRDPLCKK--CGKKFATVNALRTHVLDVHGVQYCSICLENKKVFLEELELFTKDQLKKHNTKGNPHEGFMGHPRCDFC-FSRFYSTTELYEHLRKNHFECDICLYQLNVQNRYYKDYNDLENHFRADHFLCEERECLAKKFVVFKSHLDLQAHMTVDHPH--IKTSRKIDVHFTVRRASQ 279
[Close]
BLAST of NO02G04670 vs. NCBI_GenBank
Match: ETM41138.1 (hypothetical protein L914_13059 [Phytophthora parasitica])

HSP 1 Score: 219.9 bits (559), Expect = 3.200e-53
Identity = 110/279 (39.43%), Postives = 157/279 (56.27%), Query Frame = 0 
Query:  152 CAVCTEPLNSEIHRPAMGACEHVDTCALCYLRLRRLLGDQNCPMCKTPQDIVFIFDSPRDIKPFLALPIWGMDGGPGTVTDDASRTIMPKAFYQNVFQLLHAAVCRAPGCGLLCRSLPSLREHLQRAHERFVCDVCVEHKKAFLGEQTLYTRGELARHRDKGDASRGFFGHPACEFCKQQRFYDTGALYQHLVKNHYSCDLCERHAGIQHRYYRDYPDLERHFRQEHHLCEDPRCLAQRFVVFANPIDYQGHLLAAHPDQAPSSSRKLAVAFKFPDLSQ 431
            C +C   +++      +G C H   C++C LRLR+LLG  +C MCKT  D+  +     + + F +   WG + GP  V D+AS     K  Y    + L   +C+   CG    ++ +LR H+   H    C +C+E+KK FL E  L+T+ +L +H  KG+   GF GHP C+FC   RFY T  LY+HL KNH+ CD+C     +Q+RYY+DY DLE HFR +H LCE+  CLA++FVVF + +D Q H+   HP     +SRK+ V F     SQ
Sbjct:    8 CVLCCNAIDNASRFNTVGVCNHPGCCSICALRLRQLLGQTSCVMCKT--DMPRVICISNEEQTFESFQDWGDNIGPSHVFDEASGMFFLKEDYTKRIRKLRDPLCKK--CGKKFATVNALRTHVLDVHGVQYCSICLENKKVFLEELELFTKDQLKKHNTKGNPHEGFMGHPRCDFC-FSRFYSTTELYEHLRKNHFECDICLYQLNVQNRYYKDYNDLENHFRADHFLCEERECLAKKFVVFKSHLDLQAHMTVDHPH--IKTSRKIDVHFTVRRASQ 279
[Close]
BLAST of NO02G04670 vs. NCBI_GenBank
Match: XP_008894474.1 (hypothetical protein PPTG_03549 [Phytophthora parasitica INRA-310] >ETN20569.1 hypothetical protein PPTG_03549 [Phytophthora parasitica INRA-310])

HSP 1 Score: 219.9 bits (559), Expect = 3.200e-53
Identity = 110/279 (39.43%), Postives = 157/279 (56.27%), Query Frame = 0 
Query:  152 CAVCTEPLNSEIHRPAMGACEHVDTCALCYLRLRRLLGDQNCPMCKTPQDIVFIFDSPRDIKPFLALPIWGMDGGPGTVTDDASRTIMPKAFYQNVFQLLHAAVCRAPGCGLLCRSLPSLREHLQRAHERFVCDVCVEHKKAFLGEQTLYTRGELARHRDKGDASRGFFGHPACEFCKQQRFYDTGALYQHLVKNHYSCDLCERHAGIQHRYYRDYPDLERHFRQEHHLCEDPRCLAQRFVVFANPIDYQGHLLAAHPDQAPSSSRKLAVAFKFPDLSQ 431
            C +C   +++      +G C H   C++C LRLR+LLG  +C MCKT  D+  +     + + F +   WG + GP  V D+AS     K  Y    + L   +C+   CG    ++ +LR H+   H    C +C+E+KK FL E  L+T+ +L +H  KG+   GF GHP C+FC   RFY T  LY+HL KNH+ CD+C     +Q+RYY+DY DLE HFR +H LCE+  CLA++FVVF + +D Q H+   HP     +SRK+ V F     SQ
Sbjct:    8 CVLCCNAIDNASRFNTVGVCNHPGCCSICALRLRQLLGQTSCVMCKT--DMPRVICISNEEQTFESFQDWGDNIGPSHVFDEASGMFFLKEDYTKRIRKLRDPLCKK--CGKKFATVNALRTHVLDVHGVQYCSICLENKKVFLEELELFTKDQLKKHNTKGNPHEGFMGHPRCDFC-FSRFYSTTELYEHLRKNHFECDICLYQLNVQNRYYKDYNDLENHFRADHFLCEERECLAKKFVVFKSHLDLQAHMTVDHPH--IKTSRKIDVHFTVRRASQ 279
[Close]
BLAST of NO02G04670 vs. NCBI_GenBank
Match: ETO69819.1 (hypothetical protein F444_13645 [Phytophthora parasitica P1976])

HSP 1 Score: 219.9 bits (559), Expect = 3.200e-53
Identity = 110/279 (39.43%), Postives = 157/279 (56.27%), Query Frame = 0 
Query:  152 CAVCTEPLNSEIHRPAMGACEHVDTCALCYLRLRRLLGDQNCPMCKTPQDIVFIFDSPRDIKPFLALPIWGMDGGPGTVTDDASRTIMPKAFYQNVFQLLHAAVCRAPGCGLLCRSLPSLREHLQRAHERFVCDVCVEHKKAFLGEQTLYTRGELARHRDKGDASRGFFGHPACEFCKQQRFYDTGALYQHLVKNHYSCDLCERHAGIQHRYYRDYPDLERHFRQEHHLCEDPRCLAQRFVVFANPIDYQGHLLAAHPDQAPSSSRKLAVAFKFPDLSQ 431
            C +C   +++      +G C H   C++C LRLR+LLG  +C MCKT  D+  +     + + F +   WG + GP  V D+AS     K  Y    + L   +C+   CG    ++ +LR H+   H    C +C+E+KK FL E  L+T+ +L +H  KG+   GF GHP C+FC   RFY T  LY+HL KNH+ CD+C     +Q+RYY+DY DLE HFR +H LCE+  CLA++FVVF + +D Q H+   HP     +SRK+ V F     SQ
Sbjct:    8 CVLCCNAIDNASRFNTVGVCNHPGCCSICALRLRQLLGQTSCVMCKT--DMPRVICISNEEQTFESFQDWGDNIGPSHVFDEASGMFFLKEDYTKRIRKLRDPLCKK--CGKKFATVNALRTHVLDVHGVQYCSICLENKKVFLEELELFTKDQLKKHNTKGNPHEGFMGHPRCDFC-FSRFYSTTELYEHLRKNHFECDICLYQLNVQNRYYKDYNDLENHFRADHFLCEERECLAKKFVVFKSHLDLQAHMTVDHPH--IKTSRKIDVHFTVRRASQ 279
[Close]
BLAST of NO02G04670 vs. NCBI_GenBank
Match: POM74320.1 (Avr1b-1 Avirulence-like protein [Phytophthora palmivora var. palmivora])

HSP 1 Score: 219.9 bits (559), Expect = 3.200e-53
Identity = 108/272 (39.71%), Postives = 154/272 (56.62%), Query Frame = 0 
Query:  152 CAVCTEPLNSEIHRPAMGACEHVDTCALCYLRLRRLLGDQNCPMCKTPQDIVFIFDSPRDIKPFLALPIWGMDGGPGTVTDDASRTIMPKAFYQNVFQLLHAAVCRAPGCGLLCRSLPSLREHLQRAHERFVCDVCVEHKKAFLGEQTLYTRGELARHRDKGDASRGFFGHPACEFCKQQRFYDTGALYQHLVKNHYSCDLCERHAGIQHRYYRDYPDLERHFRQEHHLCEDPRCLAQRFVVFANPIDYQGHLLAAHPDQAPSSSRKLAVAF 424
            C +C   +++      +G C H   C++C LRLR+LLG  +C MCKT  D+  +     + + F +   WG + GP  V D+ S     K  Y    + L   +C+   CG    ++ +LR H+   H    C +C+E+KK FL E  LYT+ +L +H  KG+   GF GHP C+FC   RFY T  LY+HL KNH+ CD+C     +Q+RYY+DY DLE HFR +H LCE+  CLA++FVVF + +D Q H+   HP     +SRK+ V F
Sbjct:    6 CVLCCNAIDNASRFNTVGVCNHKGCCSICALRLRQLLGQTSCVMCKT--DMPRVICVQHEDESFESFQDWGDNIGPAHVFDEPSGVFFLKEDYAKRIRKLRDPLCKK--CGKKFATVAALRTHVLDVHGLQYCSICLENKKVFLEELELYTKDQLKKHNTKGNPREGFMGHPRCDFC-FSRFYSTTELYEHLRKNHFECDICLYQLNVQNRYYKDYNDLENHFRADHFLCEERECLAKKFVVFKSHLDLQAHMTVDHPH--IKTSRKIDVHF 270
The following BLAST results are available for this feature:
BLAST of NO02G04670 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
GAY00586.11.100e-5841.69Hypothetical protein PINS_008432 [Pythium insidios... [more]
XP_002903532.13.800e-5440.14conserved hypothetical protein [Phytophthora infes... [more]
XP_009535786.15.000e-5440.50Avr1b-1 avirulence-like protein [Phytophthora soja... [more]
OWZ08585.15.000e-5440.07Avirulence (Avh) protein [Phytophthora megakarya][more]
ETI41150.13.200e-5339.43hypothetical protein F443_13592 [Phytophthora para... [more]
ETK81216.13.200e-5339.43hypothetical protein L915_13265 [Phytophthora para... [more]
ETM41138.13.200e-5339.43hypothetical protein L914_13059 [Phytophthora para... [more]
XP_008894474.13.200e-5339.43hypothetical protein PPTG_03549 [Phytophthora para... [more]
ETO69819.13.200e-5339.43hypothetical protein F444_13645 [Phytophthora para... [more]
POM74320.13.200e-5339.71Avr1b-1 Avirulence-like protein [Phytophthora palm... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007144NSK007144Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G04670.1NO02G04670.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G04670.1NO02G04670.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G04670 ID=NO02G04670|Name=NO02G04670|organism=Nannochloropsis oceanica|type=gene|length=3516bp
ATGCCGGGCGCAGGTGATGGTAGTGGTAGCGGCGCAAGTGGAGGAGGAGG
CAGCAGCAAAGGTGGAGGGAGGCAGGGTGGGGGGGGAGGTCGCGAGGAGA
AGCACGAGGTGGTGGTGGCGGAGGGGGTGGCAGTTTTCGCTCCTCATTGG
GGGGAGATGCACGAGGAGGAGGAGCAGGAGGAGGAGGAGGAGGAAGAGGA
GGAAGAGGAGACAGACGCGGTGGTGGTGGAGGTGGTGGTCGCGGCGGGGG
CAGAGGTGGCGGAGGAGGCTTCGGCAGCAGCAGCTGTAGCAGTGGCCACC
GCCCTGTTCCCTCGGGACCTCCCCCACCACCAGGCTTGGCTGAGTCCATG
GCTACGGgtatgagcttgaaggaggatgggagcttccagaaaaacgtggg
accggaggccttggcgttgctcgccaagATCAACGGGGAGGCAGTAGCAC
ATGAGGAGCATGGCCAGCCTCTAACAGCGGTGGCTGTAACTCCGGCGCGA
AAAGAGTCGATTGATGGGTTGGTATGTGCCGTGTGTACCGAGCCATTGAA
CAGTGAGATTCATCGGCCGGCGATGGGGGCGTGTGAGCATGTGGATACGT
GTGCCTTGTGTTATTTGCGGTTGCGCCGGCTGTTGGGGGATCAGgtgagg
aaaggatcgcgagtttatcaagcacagagtctaaagcgctttgttttttt
ttgttttctcgtttaatcaagttggaaagaaagggagagtgtttggaaga
aggtttttggagagggaaaaaattactaaattctaatactaggcttgcgt
ctagtaggaccaattccgaataacacctttcctccccactgtcccttcta
cccttcctccctctctcccgcctttattcagAACTGCCCCATGTGCAAGA
CCCCACAGGACATCGTCTTCATCTTTGACTCCCCCCGAGACATTAAACCC
TTCCTTGCCCTCCCCATCTGGGGCATGGACGGGGGCCCAGGGACGGTTAC
AGACGACGCAAGTCGGACCATCATGCCCAAGGCGTTTTATCAAAACGTCT
TTCAACTCCTGCATGCTGCTGTTTGTCGTGCCCCGGGCTGTGGCCTCCTG
TGTCGGTCGTTACCAAGTTTACGGGAGCACTTGCAGAGGGCGCACGAGCG
GTTTGTGTGCGATGTGTGTGTGGAGCATAAAAAGGCATTCCTGGGAGAGC
AGACGTTGTACACCCGCGGGGAACTGGCCCGGCACAGAGACAAAGGCGAT
GCCAGCAGGGGCTTCTTCGGTCATCCTGCCTGTGAGTTCTGCAAGCAGCA
ACGGTTCTACGACACGGGGGCGTTGTACCAGCACTTGGTGAAGAACCATT
ACAGCTGTGACCTGTGCGAGCGACATGCGGGGATTCAACATCGGTATTAT
CGgtacgtggccttgccctccctccctccccccttgcctccctccctctc
tccaccatccatcgactcatggtgcctatcccatcccctcccttcccccc
tcccatcccctcccttcccccctccttccctccccccttccctcctccag
TGACTACCCCGACCTAGAGCGCCACTTCCGGCAGGAGCATCACCTGTGTG
AAGACCCCCGCTGTCTCGCCCAGCGCTTCGTCGTGTTCGCCAACCCCATC
GATTACCAAGGCCACTTGCTCGCCGCCCACCCCGACCAAGCACCCAGCAG
CAGCAGGAAGCTTGCGGTGGCGTTTAAGgtgaaaaagggaggaagcgaag
gaggggaggaaggagggtacgagggaggggggggggggcacctttaacat
tccaaatgacatcggaacagTTCCCGGATTTGAGTCAGCAGACGGCGAGG
ACGAGGGGGAGGATAATGCCGATGGGAGCAGCAGTAGGAGCTGCAGCAGC
AGCTACAGTTGGAGGGGGAGGGAGAGGAGGAGGAGTTGGGAGAGTGGCAC
CAGGAGGGAGGACGGGGGTAGGTGGCTTGAGCAGGGAGGATTTCCCTGCG
CTGGGTGGTGGAGGAGGAGGAGGAGGAGAAGGAGGAGGAGGAGGAGGGGA
AGGAGGGGCGTTTTTGAACGCGTTGTTGCCGAGGGGAGCGAGGGTTGTGG
ACGAGAGGGATAGATGGTCCTACCCGGAGGTGGATATTGGGGGAGGAGGG
AAGGCTGGAGGGAAGAAGAAGAAGAAAAAGAAGCAGCCGCAGCAGCAGAG
CACCGAAAGGGATTCTATTTCTCGTCCGTTAAATGGACAGGCATTAACGG
CAGGGATCCAGTCGTTGATTGGCGTGGAGGCGTTTACCGAGTTGAGAGAC
ATGTCGAGGCAATTCCGGTGTGGGGAGTTGACCAGTGCTGAGTACTACAA
TAAGgtgaggacggggagggagagggatttttgtaggggtagtagggatt
taatgaggaagtaagcttgtagctgacttgtctctctccctctctctccc
ttcctccctcccccaaatccttcttccccacgccacgtgtttctaactct
tccctcccttcctccttacctttctgcctttctcccagGTCATGACACTG
ATGCCTTTGGGGGTGGTACGACGGAGGGTGATGGCAGATCTTGTGGATCT
TCTGCCGGAAGAAGGAGAAGAGTTGAAGAGGGAGATCAGGGCGGTGATGG
CATCAAGGGAAGGAGGGACGGAGGGGGGAATCAAGGGCGGCGAGGAGGAG
GGAAGAGGGGAGCAGGAAGAGCAGGAAGAAGAAGAGGAAGAGGATAGTAG
TGAGGAGGAGGAGGACAGAGAAGAGGAGAAGGTACGGCCACGACTGGCCT
TTCCGACTTTGGGAGAGGCGAGTAGTAGGAGCAGCAGCGGCAGCTGCAGC
AAGGTGACTGCTACCAAGCCAAAAAAGAAGCAGCAGCAGCAGGCGGGAGG
TGGGCGGTCGAGTGCATGGGCTAAGGCCCTGGCGGCGGCGGGAGGGGGCA
GTGGAGGATTGACACGTGTACCGCATGGACGCAAGCCCGCAGGGATTACA
ATTGTACGATTTAAGAATGATGACAATGAAAGAGGAGGAAGTGAGAATGG
TCAGCGAGAGGCAAATGTCTTTTTGCCACCAGGACCGCCTCTCTCGACGG
GATCATTATCGTCGATGGCTTCTCGATTGGGTGGTGCTGGCAGAGGAGGA
GGAGGAGGAGGTGGGTCAAACGTTAGTAGCAGTGCATTTTCGCACTTACC
CTCCGTGTCAACCTCACTACCGAGAGGCCCACCACCAGGGTTGGAACGTC
CTTCTAGTGTGACTAAGACGGAGGATAATTTTCCCTCCTTAGGAAGAGTG
AGCAGCAACGGTAATACCAGTGCAGCAGTCGCAGCCGCTGCTGCTCCTCG
TGTGAGCGTGAGCAAGGGTGGGTGGGTAGGCAAAGCTGTCCGGGATGCTG
CTGAAGACGAGGATTCTCCATACGCCAGTGGTGCTGCTGGCGCGGGAGGA
AAGAAGAAGAAGCAGCAGGGGAAGAAGAAAAATGCCTTGCAATTAGCGGC
ATTCAACTTTAGATAA
back to top

protein sequence of NO02G04670.1

>NO02G04670.1-protein ID=NO02G04670.1-protein|Name=NO02G04670.1|organism=Nannochloropsis oceanica|type=polypeptide|length=928bp
MPGAGDGSGSGASGGGGSSKGGGRQGGGGGREEKHEVVVAEGVAVFAPHW
GEMHEEEEQEEEEEEEEEEETDAVVVEVVVAAGAEVAEEASAAAAVAVAT
ALFPRDLPHHQAWLSPWLRINGEAVAHEEHGQPLTAVAVTPARKESIDGL
VCAVCTEPLNSEIHRPAMGACEHVDTCALCYLRLRRLLGDQNCPMCKTPQ
DIVFIFDSPRDIKPFLALPIWGMDGGPGTVTDDASRTIMPKAFYQNVFQL
LHAAVCRAPGCGLLCRSLPSLREHLQRAHERFVCDVCVEHKKAFLGEQTL
YTRGELARHRDKGDASRGFFGHPACEFCKQQRFYDTGALYQHLVKNHYSC
DLCERHAGIQHRYYRDYPDLERHFRQEHHLCEDPRCLAQRFVVFANPIDY
QGHLLAAHPDQAPSSSRKLAVAFKFPDLSQQTARTRGRIMPMGAAVGAAA
AATVGGGGRGGGVGRVAPGGRTGVGGLSREDFPALGGGGGGGGEGGGGGG
EGGAFLNALLPRGARVVDERDRWSYPEVDIGGGGKAGGKKKKKKKQPQQQ
STERDSISRPLNGQALTAGIQSLIGVEAFTELRDMSRQFRCGELTSAEYY
NKVMTLMPLGVVRRRVMADLVDLLPEEGEELKREIRAVMASREGGTEGGI
KGGEEEGRGEQEEQEEEEEEDSSEEEEDREEEKVRPRLAFPTLGEASSRS
SSGSCSKVTATKPKKKQQQQAGGGRSSAWAKALAAAGGGSGGLTRVPHGR
KPAGITIVRFKNDDNERGGSENGQREANVFLPPGPPLSTGSLSSMASRLG
GAGRGGGGGGGSNVSSSAFSHLPSVSTSLPRGPPPGLERPSSVTKTEDNF
PSLGRVSSNGNTSAAVAAAAAPRVSVSKGGWVGKAVRDAAEDEDSPYASG
AAGAGGKKKKQQGKKKNALQLAAFNFR*
back to top
Synonyms
Publications