NO02G02840, NO02G02840 (gene) Nannochloropsis oceanica

Overview
NameNO02G02840
Unique NameNO02G02840
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length744
Alignment locationchr2:766322..767065 +

Link to JBrowse

Properties
Property NameValue
DescriptionHIG1 domain family member 2A, mitochondrial
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:766322..767065 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR007667Hypoxia_induced_domain
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
BLAST of NO02G02840 vs. NCBI_GenBank
Match: EWM30408.1 (Hypoxia induced protein, domain protein [Nannochloropsis gaditana])

HSP 1 Score: 121.7 bits (304), Expect = 1.100e-24
Identity = 69/141 (48.94%), Postives = 74/141 (52.48%), Query Frame = 0
Query:    3 TFWSRLWDKTKKDPLIPIGCTATLGCLSAGLYAFKSGE-------------------------------------------------------------KHLSQKMMRARVVAQGFTVAVLMAGAFYNSNIKAIQEPARGR 83
            TFWSRLWDKTKKDPLIPIGCTATLGCL AGLYAFKSGE                                                             KHLSQ+MMRARV+AQGFT+ VLMAG+FYN NIK+  EPAR R
Sbjct:    4 TFWSRLWDKTKKDPLIPIGCTATLGCLGAGLYAFKSGEVRDARPGNQFKAGFELLWLVKRQRSGCAPDRSRQTHSSFPAGKTIWRPRCTRIHIVLIPTQKHLSQRMMRARVLAQGFTIVVLMAGSFYNMNIKSSGEPARER 144          
BLAST of NO02G02840 vs. NCBI_GenBank
Match: CBN74039.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 82.0 bits (201), Expect = 9.700e-13
Identity = 38/80 (47.50%), Postives = 55/80 (68.75%), Query Frame = 0
Query:    3 TFWSRLWDKTKKDPLIPIGCTATLGCLSAGLYAFKSGEKHLSQKMMRARVVAQGFTVAVLMAGAFYNSNIKAIQEPARGR 83
            +F+ +L  K KK+PL+PIG  AT+G L +G+Y+FK G K LSQK+MR RVVAQGFT+ V+ AG +     +  ++   G+
Sbjct:   10 SFFEKLAVKGKKEPLVPIGALATVGFLVSGIYSFKQGNKQLSQKLMRGRVVAQGFTILVMTAGFYMAGPPEMTRQTVEGK 89          
BLAST of NO02G02840 vs. NCBI_GenBank
Match: XP_014279946.1 (HIG1 domain family member 2A, mitochondrial [Halyomorpha halys])

HSP 1 Score: 79.7 bits (195), Expect = 4.800e-12
Identity = 37/67 (55.22%), Postives = 48/67 (71.64%), Query Frame = 0
Query:    7 RLWDKTKKDPLIPIGCTATLGCLSAGLYAFKSGEKHLSQKMMRARVVAQGFTVAVLMAGAFYNSNIK 74
            +L  K K++PL+PIG  AT GCLS GLY+F+ GE+ +SQ MMRARV AQGFTV  ++ G    +N K
Sbjct:   38 KLIRKFKENPLVPIGALATTGCLSYGLYSFRRGERRMSQMMMRARVAAQGFTVLAIVGGLLLTANKK 104          
BLAST of NO02G02840 vs. NCBI_GenBank
Match: XP_019390867.1 (PREDICTED: HIG1 domain family member 2A, mitochondrial [Crocodylus porosus])

HSP 1 Score: 76.6 bits (187), Expect = 4.100e-11
Identity = 38/84 (45.24%), Postives = 52/84 (61.90%), Query Frame = 0
Query:    4 FWSRLWDKTKKDPLIPIGCTATLGCLSAGLYAFKSGEKHLSQKMMRARVVAQGFTVAVLMAGAFYNS--NIKAIQEPARGRSPS 86
            F  +   KT+++PL+PIGC AT G L+ GL  FK G +  SQ MMRAR++AQGFT+A LM G    +  + K  Q    G +P+
Sbjct:   23 FSEKFMRKTRENPLVPIGCLATAGALTYGLICFKKGNRQQSQLMMRARILAQGFTIAALMVGVVTTALKSRKGSQAVGTGTAPA 106          
BLAST of NO02G02840 vs. NCBI_GenBank
Match: XP_023257913.1 (HIG1 domain family member 2A, mitochondrial [Seriola lalandi dorsalis])

HSP 1 Score: 76.3 bits (186), Expect = 5.300e-11
Identity = 34/65 (52.31%), Postives = 44/65 (67.69%), Query Frame = 0
Query:    3 TFWSRLWDKTKKDPLIPIGCTATLGCLSAGLYAFKSGEKHLSQKMMRARVVAQGFTVAVLMAGAF 68
            TF  +L  KTK++P +PIGC AT G L  GL AF+ G+ H SQ +MR R+ AQGFT+  L+ G F
Sbjct:   41 TFKEKLMRKTKQNPFVPIGCLATAGALMYGLRAFQQGKTHQSQLLMRGRIAAQGFTIVALLVGVF 105          
BLAST of NO02G02840 vs. NCBI_GenBank
Match: XP_022607784.1 (HIG1 domain family member 2A, mitochondrial [Seriola dumerili])

HSP 1 Score: 75.9 bits (185), Expect = 7.000e-11
Identity = 34/65 (52.31%), Postives = 44/65 (67.69%), Query Frame = 0
Query:    3 TFWSRLWDKTKKDPLIPIGCTATLGCLSAGLYAFKSGEKHLSQKMMRARVVAQGFTVAVLMAGAF 68
            TF  +L  KTK++P +PIGC AT G L  GL AF+ G+ H SQ +MR R+ AQGFT+  L+ G F
Sbjct:   41 TFKEKLMRKTKQNPFVPIGCLATAGALIYGLRAFQQGKTHQSQLLMRGRIAAQGFTIVALLVGVF 105          
BLAST of NO02G02840 vs. NCBI_GenBank
Match: XP_001649065.1 (HIG1 domain family member 2A, mitochondrial [Aedes aegypti] >EAT44199.1 AAEL004404-PA [Aedes aegypti])

HSP 1 Score: 74.3 bits (181), Expect = 2.000e-10
Identity = 31/55 (56.36%), Postives = 42/55 (76.36%), Query Frame = 0
Query:   11 KTKKDPLIPIGCTATLGCLSAGLYAFKSGEKHLSQKMMRARVVAQGFTVAVLMAG 66
            K K++PL+PIGC AT+ CL  GL++F+ G + +SQ MMRAR+ AQGFTV  L+ G
Sbjct:   41 KVKENPLVPIGCAATISCLGYGLWSFRKGRRQMSQYMMRARIFAQGFTVVALIVG 95          
BLAST of NO02G02840 vs. NCBI_GenBank
Match: XP_009011156.1 (hypothetical protein HELRODRAFT_72617 [Helobdella robusta] >ESO10887.1 hypothetical protein HELRODRAFT_72617 [Helobdella robusta])

HSP 1 Score: 74.3 bits (181), Expect = 2.000e-10
Identity = 34/71 (47.89%), Postives = 48/71 (67.61%), Query Frame = 0
Query:    3 TFWSRLWDKTKKDPLIPIGCTATLGCLSAGLYAFKSGEKHLSQKMMRARVVAQGFTVAVLMAGAFYNSNIK 74
            TF  ++  KT ++PL+P G  AT+G L+ GLY+ K G+  LSQ+MMR RV+AQGFTV  +M G +  +  K
Sbjct:   28 TFSDKISRKTCENPLVPFGLLATIGALTIGLYSLKKGDSKLSQRMMRMRVMAQGFTVLAVMGGVYMQATKK 98          
BLAST of NO02G02840 vs. NCBI_GenBank
Match: XP_001991053.1 (GH12463 [Drosophila grimshawi] >EDV99677.1 GH12463 [Drosophila grimshawi])

HSP 1 Score: 74.3 bits (181), Expect = 2.000e-10
Identity = 34/59 (57.63%), Postives = 43/59 (72.88%), Query Frame = 0
Query:    7 RLWDKTKKDPLIPIGCTATLGCLSAGLYAFKSGEKHLSQKMMRARVVAQGFTVAVLMAG 66
            RL  K K++PL+PIGC AT   LSAGLY F++G + +SQ MMR R+ AQGFTV  L+ G
Sbjct:   35 RLVRKIKENPLVPIGCLATTAALSAGLYNFRTGNRKMSQLMMRTRIAAQGFTVVALIVG 93          
BLAST of NO02G02840 vs. NCBI_GenBank
Match: XP_008468670.1 (PREDICTED: HIG1 domain family member 2A, mitochondrial [Diaphorina citri] >XP_017298185.1 PREDICTED: HIG1 domain family member 2A, mitochondrial [Diaphorina citri])

HSP 1 Score: 74.3 bits (181), Expect = 2.000e-10
Identity = 35/64 (54.69%), Postives = 43/64 (67.19%), Query Frame = 0
Query:    7 RLWDKTKKDPLIPIGCTATLGCLSAGLYAFKSGEKHLSQKMMRARVVAQGFTVAVLMAGAFYNS 71
            +L  K K++PL+PIGC AT   L  GLY+ K G++ LSQ MMR RVVAQGFTV  L  G  Y +
Sbjct:   38 KLIRKFKENPLVPIGCVATSAALGVGLYSMKLGDRRLSQMMMRTRVVAQGFTVLALTGGLIYTA 101          
The following BLAST results are available for this feature:
BLAST of NO02G02840 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM30408.11.100e-2448.94Hypoxia induced protein, domain protein [Nannochlo... [more]
CBN74039.19.700e-1347.50conserved unknown protein [Ectocarpus siliculosus][more]
XP_014279946.14.800e-1255.22HIG1 domain family member 2A, mitochondrial [Halyo... [more]
XP_019390867.14.100e-1145.24PREDICTED: HIG1 domain family member 2A, mitochond... [more]
XP_023257913.15.300e-1152.31HIG1 domain family member 2A, mitochondrial [Serio... [more]
XP_022607784.17.000e-1152.31HIG1 domain family member 2A, mitochondrial [Serio... [more]
XP_001649065.12.000e-1056.36HIG1 domain family member 2A, mitochondrial [Aedes... [more]
XP_009011156.12.000e-1047.89hypothetical protein HELRODRAFT_72617 [Helobdella ... [more]
XP_001991053.12.000e-1057.63GH12463 [Drosophila grimshawi] >EDV99677.1 GH12463... [more]
XP_008468670.12.000e-1054.69PREDICTED: HIG1 domain family member 2A, mitochond... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G02840.1NO02G02840.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574448gene_868Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100026g20gene285Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G02840.1NO02G02840.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G02840 ID=NO02G02840|Name=NO02G02840|organism=Nannochloropsis oceanica|type=gene|length=744bp
ATGGCAACGTTTTGGAGCCGATTGTGGGACAAGACGAAGAAGGACCCCCT
GATTCCCATTGGTTGCACCGCGACGCTGGGTTGCCTCAGTGCGGGTCTGT
ACGCCTTCAAGAGCGGAGAGgtacgtgggcgtctgtggactgcgaaaggg
gacggcgggccacacaagtcaacccttccccccccccctcccgctccccc
caatccgtgaattctgtttacaatactttctgatcaaccggcattcatgc
gtaaacacagAAACATTTATCACAAAAAATGATGCGGGCCCGCGTGGTGG
CACAAGGCTTCACAGTCGCGGTCCTCATGGCAGgtaaggagacgcagaaa
gacggtagatagggacggaagttaataatgcccgcttcccgcgtgatgac
tggtgctttccaattctagggtcgtcgaggccatttcttcgtagttcctc
ccgtggcttatttcctccacgctatcctgtacagGCGCTTTCTACAATTC
GAATATAAAGGCAATCCAGGAGCCTGCTCGTGGCAGgtagggctgttttc
attcaaaagaggaagacagggaggtcagatggagggatgccggctgccag
gatgcagttagagggttcctttatttgtgtgtaataatgtgaaaaaatcc
ccctcttctaaactgacgtttccgctccttaccctggtaatcaattcaca
tgaactctccgctcttccctcttttacacagGAGTCCATCTTAA
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protein sequence of NO02G02840.1

>NO02G02840.1-protein ID=NO02G02840.1-protein|Name=NO02G02840.1|organism=Nannochloropsis oceanica|type=polypeptide|length=86bp
MATFWSRLWDKTKKDPLIPIGCTATLGCLSAGLYAFKSGEKHLSQKMMRA
RVVAQGFTVAVLMAGAFYNSNIKAIQEPARGRSPS*
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Synonyms
Publications