NO02G02560, NO02G02560 (gene) Nannochloropsis oceanica

Overview
NameNO02G02560
Unique NameNO02G02560
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1524
Alignment locationchr2:715240..716763 +

Link to JBrowse

Properties
Property NameValue
DescriptionSnurportin-1
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:715240..716763 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0061015snRNA import into nucleus
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
GO:0005634nucleus
Homology
[Close]
BLAST of NO02G02560 vs. NCBI_GenBank
Match: EWM30366.1 (hypothetical protein Naga_100026g47 [Nannochloropsis gaditana])

HSP 1 Score: 336.7 bits (862), Expect = 1.300e-88
Identity = 205/486 (42.18%), Postives = 266/486 (54.73%), Query Frame = 0 
Query:   10 AAPSQQPQMRRIPPKQKAASAYTSAREHRRAAVLQRQRAARRELTYNLRALISNAIDKEEPGAETGEDDSRQDQALEETCDGAPMAMDEGGAQGSTQYFDEKGAHPNKRVRGKQAQFYASQFSIPEWMVDIPRDLNGHLSTEEGGGWFVMPRPEGKRCLMVASGGITVTRLMNGEVLHRFPSALPNGSPRAKGPKDGWTLLDCIYSEASRTYFVLDLLCWRKMELYDCTCEFRFFILRSKFEEELGRSXXXXXXXXXXXXXXXXXXXXXXGGYLLEPLPYFECDSNGLRRAYGDYAPFVRDGLLFWSKQSYVEIGPSPLVLLWKDMKCSRYFLREXXXXXXXXXXXXXXXXXXXXVQKAKGEDGEKSGYVLSTLDDVVLGRTTLEEVNAWGLGQVQDGRA----GXXXXXXXXXXXXXXXXXXXXXXXXXXXXLHGLQFDRKCSSKRAVADAWSKLLFHARAKKGIREGGTAVTFDTLLQAVERPV 492
            A+P Q+P      PK K  S+ +S+R+ RR++VLQRQRAARRELT +LRAL  + I +++  + T   +  Q    +   +   M +D     G  Q   EK A   KR R +QA  YA++F+IPEWM++IP DL+    T  GGGW VMP+P GKRCLM A+GG+T+TR+ +GEVLHR  S LPNGS  AKGPK+GWTLLDC+Y E+SRTY+VLDLLCWRKMELYDC C+FR F LRSKF EE+                           + LE LP++EC   GL+       PF +DG LFW+K+ YV+ G +PL+LLWKD   S    R+                           +G+   Y+L TL+ + +G  T +E + W   Q Q G A    G                            LHGL + R C      AD WSKLLF +R K+G+ EGG AVTFD LL  VER +
Sbjct:    7 ASPQQRPY-----PKSKLISS-SSSRDKRRSSVLQRQRAARRELTDSLRALHRDTIAEDDVDSMTRSGNGSQLYESDVIQEDDGMMVD-----GQGQVQAEKIALRRKRARARQATIYANRFAIPEWMIEIPHDLH---PTGGGGGWLVMPQPMGKRCLMAATGGLTLTRMTSGEVLHRLASPLPNGSAWAKGPKNGWTLLDCVYQESSRTYYVLDLLCWRKMELYDCACDFRLFFLRSKFAEEMEHRAGAILMHGTDASNET---------FHLELLPWYECHRTGLQMLRSASFPFEQDGFLFWNKEGYVQAGLTPLILLWKDAHSSHSLYRDSLLPRWSAVLSVRLCEDPG--------EGKTQDYLLLTLEGLAVGSVTRDEFHRWSRSQEQ-GEAGSIGGEGDIEGEGFLVCFWYEEATEDETSQEHRLHGLTYRRICVPSSETADCWSKLLFQSRVKRGM-EGG-AVTFDMLLCDVEREI 458
[Close]
BLAST of NO02G02560 vs. NCBI_GenBank
Match: GAX96850.1 (snurportin-like protein, partial [Pythium insidiosum])

HSP 1 Score: 230.3 bits (586), Expect = 1.300e-56
Identity = 159/472 (33.69%), Postives = 225/472 (47.67%), Query Frame = 0 
Query:   19 RRIPPKQKAASAYTSAREHRRAAVLQRQRAARRELTYNLRALISNAIDKEEPGAETGEDDSRQDQALEETCDGAPMAMDEGGAQGSTQYFDEKGAHPNKRVRGKQAQFYASQFSIPEWMVDIPRDLNGHLSTEEGGGWFVMPRPEGKRCLMVASGGITVTRLMNGEVLHRFPSALPNGSPRAKGPKDGWTLLDCIYSEASRTYFVLDLLCWRKMELYDCTCEFRFFILRSKFEEELGRSXXXXXXXXXXXXXXXXXXXXXXGG-----YLLEPLPYFECDSNGLRRAYGDYAPFVRDGLLFWSKQSYVEIGPSPLVLLWKDMKCSRYFLREXXXXXXXXXXXXXXXXXXXXVQKAKGEDGEKSGYVLSTLDDVVLGRTTLEEVNAWGLGQVQDGRAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXLHGLQFDRKCSSKRAVADAWSKLLFHARAKKGIREGGTAVTFDTLLQ 486
            RR+  K +  +   +AR H   AV+Q QR ARR+LT   R L + + D+   G E  E D+    A+E+   G+  +               K     +R++ ++A F A Q  +PEWMVD+P DLNG   ++ G GW+V+PRPEGKRCL+VAS G+T+ R   G V  RFPSALPNGS +  G  D + +LDCI+ E  +T++VLD++CW+   LY+CT EFR+F LR K  E    +                                +PLP +ECD  G+  AY    PF++DGLLF+ K ++ ++G +PLVL+WKD KCSR+ +                               EK   VL    D     TTLE +  W         A                             L GL F ++ S +RA+ D+W+K+LF   A    R GGT   F+T+L+
Sbjct:   13 RRVGIKHQDWTRDAAARRH---AVMQLQRQARRDLTALARRLATASSDEVAAGDE--ETDTDDAVAMEDVTTGSARS---------------KLKTREERIKRRRAHF-AQQLLVPEWMVDVPSDLNGK-GSQIGAGWYVVPRPEGKRCLVVASHGLTIARTQAGSVFKRFPSALPNGSRKTNGSGDAYCILDCIFHEYDKTFYVLDVMCWKGYLLYNCTTEFRWFWLRDKLSEGTSATASTANPFRFLVGYYVSDAAQCFATDDLVMSAFQPLPCYECDEQGVIDAYTTPFPFLKDGLLFYMKSAHYDLGLTPLVLVWKDAKCSRFHVYT-----------------------------EKPTIVLQL--DADNKFTTLEGIALW-----TPDPAFLQANELTTGDLAKFSFDEGYFTSDQTPHLMGLTFLQRSSPQRALPDSWTKILFQYNA----RSGGT--RFETILE 420
[Close]
BLAST of NO02G02560 vs. NCBI_GenBank
Match: CCA19475.1 (snurportinlike protein putative [Albugo laibachii Nc14])

HSP 1 Score: 217.2 bits (552), Expect = 1.100e-52
Identity = 144/468 (30.77%), Postives = 214/468 (45.73%), Query Frame = 0 
Query:   38 RRAAVLQRQRAARRELTYNLRALISNAIDKEEPGAETGEDDSRQDQALEETCDGAPMAMDEGGAQGSTQYFDEKGAHPNKRVRGKQAQFYASQFSIPEWMVDIPRDLNGHLSTEEGGGWFVMPRPEGKRCLMVASGGITVTRLMNGEVLHRFPSALPNGSPRAKGPKDGWTLLDCIY---SEASRTYFVLDLLCWRKMELYDCTCEFRFFILRSKFEEELGRSXXXXXXXXXXXXXXXXXXXXXXGGYLLEPLPYFECDSNGLRRAYGDYAPFVRDGLLFWSKQSYVEIGPSPLVLLWKDMKCSRYFLREXXXXXXXXXXXXXXXXXXXXVQKAKGEDGEKSGYVLSTLDDVVLGRTTLEEVNAWGLGQVQDGRAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXLHGLQFDRKCSSKRAVADAWSKLLFHARAKKGIREGGTAVTFDTLLQAVERPVQKEVREESNDV 503
            RR   LQ+QR A+RELT + R L     ++E    +    +  + +  ++T +                          +RVR ++ ++Y++QF IPEWM+DIP DLNG  ST  G GW+V+PRPEGKRCL++ + G+TV R  NG  L +FPSALPNGS +     DG+ +LDCIY   ++    ++VLD+LCW+   LY+CT EFR + LR K  E                             Y   P+P FECD  GL  AY    P+++DGLLF  K ++ E+G SP   +WKD   SR+ +                      V   + +     G VL T++D   G     E+    L Q                                   L G+QF R+CS +RA+ D+W+K++F   A+ G       ++ D +++ +       + +E  DV
Sbjct:   18 RRREALQKQRQAQRELTSHARRLAVGCCEEESDRMQIDTINDVKSKLKKKTRE--------------------------ERVRARK-EYYSTQFMIPEWMIDIPSDLNGKGST-TGEGWYVLPRPEGKRCLVITNNGVTVARKTNGSTLQKFPSALPNGSRKTTSHSDGYCILDCIYQTNADDQGVFYVLDVLCWKGYLLYNCTTEFRLYWLREKLTE------------------GNAAVRAPANPYPFLPIPCFECDCGGLETAYKTSFPYIKDGLLFIMKAAHYELGLSPCCTIWKDTHTSRFLV-------------FTEKPIIVLVLNDQRQCTTMEGIVLYTIED--KGILAHHELREGDLIQFS--------------------FEHNVYSPDQTPSLSGMQFMRRCSPQRALPDSWTKVVFQYNARYG------GISIDDIIKTI---TSSSMTDEKQDV 395
[Close]
BLAST of NO02G02560 vs. NCBI_GenBank
Match: XP_008912978.1 (hypothetical protein PPTG_17099 [Phytophthora parasitica INRA-310] >XP_008912979.1 hypothetical protein, variant 1 [Phytophthora parasitica INRA-310] >XP_008912980.1 hypothetical protein, variant 2 [Phytophthora parasitica INRA-310] >XP_008912981.1 hypothetical protein, variant 3 [Phytophthora parasitica INRA-310] >ETN01663.1 hypothetical protein PPTG_17099 [Phytophthora parasitica INRA-310] >ETN01664.1 hypothetical protein, variant 1 [Phytophthora parasitica INRA-310] >ETN01665.1 hypothetical protein, variant 2 [Phytophthora parasitica INRA-310] >ETN01666.1 hypothetical protein, variant 3 [Phytophthora parasitica INRA-310])

HSP 1 Score: 214.5 bits (545), Expect = 7.400e-52
Identity = 142/467 (30.41%), Postives = 212/467 (45.40%), Query Frame = 0 
Query:   31 YTSAREHRRAAVLQRQRAARRELTYNLRALISNAIDKEEPGAETGEDDSRQDQALEETCDGAPMAMDEGGAQGSTQYFDEKGAHPNKRVRGKQAQFYASQFSIPEWMVDIPRDLNGHLSTEEGGGWFVMPRPEGKRCLMVASGGITVTRLMNGEVLHRFPSALPNGSPRAKGPKDGWTLLDCIYSEASRTYFVLDLLCWRKMELYDCTCEFRFFILRSKFEEELGRSXXXXXXXXXXXXXXXXXXXXXXGGYLLEPLPYFECDSNGLRRAYGDYAPFVRDGLLFWSKQSYVEIGPSPLVLLWKDMKCSRYFLREXXXXXXXXXXXXXXXXXXXXVQKAKGEDGEKSGYVLSTLDDVVLGRTTLEEVNAWGLGQVQDGRAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXLHGLQFDRKCSSKRAVADAWSKLLFHARAKKGIREGGTAVTFDTLLQAVERPVQKEVRE 498
            +T     RR   L +QR ARR+LT + R L   A  +E P    GED    D  +  T                      K     +RV+ ++  F + Q   PEW++DIP+DLNG+ S   G GW+V+PRPEGKRCL+VA+GG T+ R+ +G +L +FPSALP GS +     DG+ +LDCI+ E + T++VLD++CW+   LY+CT EFR + +R K  E                             +   P+P +E D  G+  AY    PF++DGLLF+ K  + E+G SPL L+WKD   SR+F+                      V + +G++         TL+ + L     + +    L +                                   L GL F ++CS +RA+ D+W+K+LF   A+ G       V  + +L+A      + V E
Sbjct:   12 WTKDAAARRRETLAQQRQARRDLTAHARQL---AQQQEPPSPHGGEDAQPMDGVISAT---------------------SKRRTREERVKQRREHF-SKQLMTPEWLIDIPKDLNGNGSL-LGEGWYVLPRPEGKRCLVVANGGNTIARIPSGSILKKFPSALPCGSHKTNKSNDGYCILDCIFQEQNETFYVLDVMCWKGYLLYNCTTEFRLYWMRDKLSE------------------GATGMTAPANPFRFLPVPSYESDQEGIMAAYSTTYPFLKDGLLFYMKAGHYEMGLSPLALVWKDANTSRFFV---------------YSAKPSIVLRFEGDN------EFVTLEGIALFTANQDFIQEHELNE---------------GDLASFSFEQTEVDESQTPHLTGLTFVKRCSPQRALPDSWTKILFQYNARSG------GVPIERILEAAHAQTTEVVME 392
[Close]
BLAST of NO02G02560 vs. NCBI_GenBank
Match: XP_024577755.1 (m3G-cap-specific nuclear import receptor (Snurportin1) [Plasmopara halstedii] >CEG41386.1 m3G-cap-specific nuclear import receptor (Snurportin1) [Plasmopara halstedii])

HSP 1 Score: 214.5 bits (545), Expect = 7.400e-52
Identity = 124/395 (31.39%), Postives = 191/395 (48.35%), Query Frame = 0 
Query:   97 DEGGAQGSTQYFDEKGAHPNKRVR----GKQAQFYASQFSIPEWMVDIPRDLNGHLSTEEGGGWFVMPRPEGKRCLMVASGGITVTRLMNGEVLHRFPSALPNGSPRAKGPKDGWTLLDCIYSEASRTYFVLDLLCWRKMELYDCTCEFRFFILRSKFEEELGRSXXXXXXXXXXXXXXXXXXXXXXGGYLLEPLPYFECDSNGLRRAYGDYAPFVRDGLLFWSKQSYVEIGPSPLVLLWKDMKCSRYFLREXXXXXXXXXXXXXXXXXXXXVQKAKGEDGEKSGYVLSTLDDVVLGRTTLEE--VNAWGLGQVQDGRAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXLHGLQFDRKCSSKRAVADAWSKLLFHARAKKGIREGGTAVTFDTLLQ 486
            DEG     T+  D+  +   +R R     ++ ++Y+ Q   PEW++D+P+DLNG + +  G GW+V+PRPEGKRCL+VA+GG T+ R+ +G +L++FPSALP GS +     DG+ +LDCIY E + T++VLD++CW+   LY+CT EFR + +R K  E L  +                        +   P+P +ECD  G+  AY    PF +DGLLF+ K  + E+G SPL L+WKD   SR+F                         +   E     G  L   D   + +  L E  + ++   Q +D                                L G+ F ++CS  RA+ D+W+K+LF  + + G       VT + +L+
Sbjct:   53 DEG-----TEPMDDIASVSKRRTREDRVKQRREYYSKQLMTPEWLLDVPKDLNG-MGSALGEGWYVLPRPEGKRCLVVANGGNTIARIPSGNILNKFPSALPCGSYKTNKSSDGYCILDCIYQEQNETFYVLDIMCWKGYLLYNCTSEFRLYWMRDKLSEGLTAT------------------VSSANPFRFLPIPCYECDQAGIMAAYSTMYPFHKDGLLFYMKAGHYEMGLSPLALVWKDSMTSRFFSSTKPSIVLRL--------------EQNNEFLTLEGIALFAADQQYIHQFELSEGDLASFSYDQYED-------------------------DDKQPPHLTGMTFVKRCSPLRALPDSWTKILFQLKTRSG------GVTIEQILE 378
[Close]
BLAST of NO02G02560 vs. NCBI_GenBank
Match: ETI35329.1 (hypothetical protein F443_18322 [Phytophthora parasitica P1569] >ETI35330.1 hypothetical protein, variant 1 [Phytophthora parasitica P1569] >ETK75584.1 hypothetical protein L915_17835 [Phytophthora parasitica] >ETK75585.1 hypothetical protein, variant 1 [Phytophthora parasitica] >ETK75586.1 hypothetical protein, variant 2 [Phytophthora parasitica] >ETK75587.1 hypothetical protein, variant 3 [Phytophthora parasitica] >ETL82252.1 hypothetical protein L917_17564 [Phytophthora parasitica] >ETL82253.1 hypothetical protein, variant 1 [Phytophthora parasitica] >ETO64073.1 hypothetical protein F444_18343 [Phytophthora parasitica P1976] >ETO64074.1 hypothetical protein, variant 1 [Phytophthora parasitica P1976] >ETP33304.1 hypothetical protein F442_18151 [Phytophthora parasitica P10297] >ETP33305.1 hypothetical protein, variant 1 [Phytophthora parasitica P10297])

HSP 1 Score: 213.0 bits (541), Expect = 2.200e-51
Identity = 137/440 (31.14%), Postives = 203/440 (46.14%), Query Frame = 0 
Query:   31 YTSAREHRRAAVLQRQRAARRELTYNLRALISNAIDKEEPGAETGEDDSRQDQALEETCDGAPMAMDEGGAQGSTQYFDEKGAHPNKRVRGKQAQFYASQFSIPEWMVDIPRDLNGHLSTEEGGGWFVMPRPEGKRCLMVASGGITVTRLMNGEVLHRFPSALPNGSPRAKGPKDGWTLLDCIYSEASRTYFVLDLLCWRKMELYDCTCEFRFFILRSKFEEELGRSXXXXXXXXXXXXXXXXXXXXXXGGYLLEPLPYFECDSNGLRRAYGDYAPFVRDGLLFWSKQSYVEIGPSPLVLLWKDMKCSRYFLREXXXXXXXXXXXXXXXXXXXXVQKAKGEDGEKSGYVLSTLDDVVLGRTTLEEVNAWGLGQVQDGRAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXLHGLQFDRKCSSKRAVADAWSKLLFHARAKKG 471
            +T     RR   L +QR ARR+LT + R L   A  +E P    GED    D  +  T                      K     +RV+ ++  F + Q   PEW++DIP+DLNG+ S   G GW+V+PRPEGKRCL+VA+GG T+ R+ +G +L +FPSALP GS +     DG+ +LDCI+ E + T++VLD++CW+   LY+CT EFR + +R K  E                             +   P+P +E D  G+  AY    PF++DGLLF+ K  + E+G SPL L+WKD   SR+F+                      V + +G++         TL+ + L     + +    L +                                   L GL F ++CS +RA+ D+W+K+LF   A+ G
Sbjct:   12 WTKDAAARRRETLAQQRQARRDLTAHARQL---AQQQEPPSPHGGEDAQPMDGVISAT---------------------SKRRTREERVKQRREHF-SKQLMTPEWLIDIPKDLNGNGSL-LGEGWYVLPRPEGKRCLVVANGGNTIARIPSGSILKKFPSALPCGSHKTNKSNDGYCILDCIFQEQNETFYVLDVMCWKGYLLYNCTTEFRLYWMRDKLSE------------------GATGMTAPANPFRFLPVPSYESDQEGIMAAYSTTYPFLKDGLLFYMKAGHYEMGLSPLALVWKDANTSRFFV---------------YSAKPSIVLRFEGDN------EFVTLEGIALFTANQDFIQEHELNE---------------GDLASFSFEQTEVDESQTPHLTGLTFVKRCSPQRALPDSWTKILFQYNARSG 371
[Close]
BLAST of NO02G02560 vs. NCBI_GenBank
Match: ETL29015.1 (hypothetical protein L916_17736 [Phytophthora parasitica] >ETL29016.1 hypothetical protein, variant 1 [Phytophthora parasitica] >ETL29017.1 hypothetical protein, variant 2 [Phytophthora parasitica] >ETL29018.1 hypothetical protein, variant 3 [Phytophthora parasitica] >ETM35464.1 hypothetical protein L914_17646 [Phytophthora parasitica] >ETM35465.1 hypothetical protein, variant 1 [Phytophthora parasitica] >ETP05154.1 hypothetical protein F441_18198 [Phytophthora parasitica CJ01A1] >ETP05155.1 hypothetical protein, variant 1 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 213.0 bits (541), Expect = 2.200e-51
Identity = 137/440 (31.14%), Postives = 203/440 (46.14%), Query Frame = 0 
Query:   31 YTSAREHRRAAVLQRQRAARRELTYNLRALISNAIDKEEPGAETGEDDSRQDQALEETCDGAPMAMDEGGAQGSTQYFDEKGAHPNKRVRGKQAQFYASQFSIPEWMVDIPRDLNGHLSTEEGGGWFVMPRPEGKRCLMVASGGITVTRLMNGEVLHRFPSALPNGSPRAKGPKDGWTLLDCIYSEASRTYFVLDLLCWRKMELYDCTCEFRFFILRSKFEEELGRSXXXXXXXXXXXXXXXXXXXXXXGGYLLEPLPYFECDSNGLRRAYGDYAPFVRDGLLFWSKQSYVEIGPSPLVLLWKDMKCSRYFLREXXXXXXXXXXXXXXXXXXXXVQKAKGEDGEKSGYVLSTLDDVVLGRTTLEEVNAWGLGQVQDGRAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXLHGLQFDRKCSSKRAVADAWSKLLFHARAKKG 471
            +T     RR   L +QR ARR+LT + R L   A  +E P    GED    D  +  T                      K     +RV+ ++  F + Q   PEW++DIP+DLNG+ S   G GW+V+PRPEGKRCL+VA+GG T+ R+ +G +L +FPSALP GS +     DG+ +LDCI+ E + T++VLD++CW+   LY+CT EFR + +R K  E                             +   P+P +E D  G+  AY    PF++DGLLF+ K  + E+G SPL L+WKD   SR+F+                      V + +G++         TL+ + L     + +    L +                                   L GL F ++CS +RA+ D+W+K+LF   A+ G
Sbjct:   12 WTKDAAARRRETLAQQRQARRDLTAHARQL---AQQQEPPSPHGGEDAQPMDGVISAT---------------------SKRRTREERVKQRREHF-SKQLMAPEWLIDIPKDLNGNGSL-LGEGWYVLPRPEGKRCLVVANGGNTIARIPSGSILKKFPSALPCGSHKTNKSNDGYCILDCIFQEQNETFYVLDVMCWKGYLLYNCTTEFRLYWMRDKLSE------------------GATGMTAPANPFRFLPVPSYESDQEGIMAAYSTTYPFLKDGLLFYMKAGHYEMGLSPLALVWKDANTSRFFV---------------YSAKPSIVLRFEGDN------EFVTLEGIALFTANQDFIQEHELNE---------------GDLASFSFEQTEVDESQTPHLTGLTFVKRCSPQRALPDSWTKILFQYNARSG 371
[Close]
BLAST of NO02G02560 vs. NCBI_GenBank
Match: KUF80976.1 (Snurportin-1 [Phytophthora nicotianae])

HSP 1 Score: 213.0 bits (541), Expect = 2.200e-51
Identity = 137/440 (31.14%), Postives = 203/440 (46.14%), Query Frame = 0 
Query:   31 YTSAREHRRAAVLQRQRAARRELTYNLRALISNAIDKEEPGAETGEDDSRQDQALEETCDGAPMAMDEGGAQGSTQYFDEKGAHPNKRVRGKQAQFYASQFSIPEWMVDIPRDLNGHLSTEEGGGWFVMPRPEGKRCLMVASGGITVTRLMNGEVLHRFPSALPNGSPRAKGPKDGWTLLDCIYSEASRTYFVLDLLCWRKMELYDCTCEFRFFILRSKFEEELGRSXXXXXXXXXXXXXXXXXXXXXXGGYLLEPLPYFECDSNGLRRAYGDYAPFVRDGLLFWSKQSYVEIGPSPLVLLWKDMKCSRYFLREXXXXXXXXXXXXXXXXXXXXVQKAKGEDGEKSGYVLSTLDDVVLGRTTLEEVNAWGLGQVQDGRAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXLHGLQFDRKCSSKRAVADAWSKLLFHARAKKG 471
            +T     RR   L +QR ARR+LT + R L   A  +E P    GED    D  +  T                      K     +RV+ ++  F + Q   PEW++DIP+DLNG+ S   G GW+V+PRPEGKRCL+VA+GG T+ R+ +G +L +FPSALP GS +     DG+ +LDCI+ E + T++VLD++CW+   LY+CT EFR + +R K  E                             +   P+P +E D  G+  AY    PF++DGLLF+ K  + E+G SPL L+WKD   SR+F+                      V + +G++         TL+ + L     + +    L +                                   L GL F ++CS +RA+ D+W+K+LF   A+ G
Sbjct:   12 WTKDAAARRRETLAQQRQARRDLTAHARQL---AQQQEPPSPHGGEDAQPMDGVISAT---------------------SKRRTREERVKQRREHF-SKQLMTPEWLIDIPKDLNGNGSL-LGEGWYVLPRPEGKRCLVVANGGNTIARIPSGSILKKFPSALPCGSHKTNKSNDGYCILDCIFQEQNETFYVLDVMCWKGYLLYNCTTEFRLYWMRDKLSE------------------GATGMTAPANPFRFLPVPSYESDQEGIMAAYSTTYPFLKDGLLFYMKAGHYEMGLSPLALVWKDANTSRFFV---------------YSAKPSIVLRFEGDN------EFVTLEGIALFTANQDFIQEHELNE---------------GDLASFSFEQTEVDESQTPHLTGLTFVKRCSPQRALPDSWTKILFQYNARSG 371
[Close]
BLAST of NO02G02560 vs. NCBI_GenBank
Match: XP_008912982.1 (hypothetical protein, variant 4 [Phytophthora parasitica INRA-310] >ETI35331.1 hypothetical protein, variant 2 [Phytophthora parasitica P1569] >ETK75588.1 hypothetical protein, variant 4 [Phytophthora parasitica] >ETL82254.1 hypothetical protein, variant 2 [Phytophthora parasitica] >ETN01667.1 hypothetical protein, variant 4 [Phytophthora parasitica INRA-310] >ETO64075.1 hypothetical protein, variant 2 [Phytophthora parasitica P1976] >ETP33306.1 hypothetical protein, variant 2 [Phytophthora parasitica P10297])

HSP 1 Score: 207.6 bits (527), Expect = 9.100e-50
Identity = 116/312 (37.18%), Postives = 165/312 (52.88%), Query Frame = 0 
Query:   31 YTSAREHRRAAVLQRQRAARRELTYNLRALISNAIDKEEPGAETGEDDSRQDQALEETCDGAPMAMDEGGAQGSTQYFDEKGAHPNKRVRGKQAQFYASQFSIPEWMVDIPRDLNGHLSTEEGGGWFVMPRPEGKRCLMVASGGITVTRLMNGEVLHRFPSALPNGSPRAKGPKDGWTLLDCIYSEASRTYFVLDLLCWRKMELYDCTCEFRFFILRSKFEEELGRSXXXXXXXXXXXXXXXXXXXXXXGGYLLEPLPYFECDSNGLRRAYGDYAPFVRDGLLFWSKQSYVEIGPSPLVLLWKDMKCSRYFL 343
            +T     RR   L +QR ARR+LT + R L   A  +E P    GED    D  +  T                      K     +RV+ ++  F + Q   PEW++DIP+DLNG+ S   G GW+V+PRPEGKRCL+VA+GG T+ R+ +G +L +FPSALP GS +     DG+ +LDCI+ E + T++VLD++CW+   LY+CT EFR + +R K  E                             +   P+P +E D  G+  AY    PF++DGLLF+ K  + E+G SPL L+WKD   SR+F+
Sbjct:   12 WTKDAAARRRETLAQQRQARRDLTAHARQL---AQQQEPPSPHGGEDAQPMDGVISAT---------------------SKRRTREERVKQRREHF-SKQLMTPEWLIDIPKDLNGNGSL-LGEGWYVLPRPEGKRCLVVANGGNTIARIPSGSILKKFPSALPCGSHKTNKSNDGYCILDCIFQEQNETFYVLDVMCWKGYLLYNCTTEFRLYWMRDKLSE------------------GATGMTAPANPFRFLPVPSYESDQEGIMAAYSTTYPFLKDGLLFYMKAGHYEMGLSPLALVWKDANTSRFFV 279
[Close]
BLAST of NO02G02560 vs. NCBI_GenBank
Match: ETL29019.1 (hypothetical protein, variant 4 [Phytophthora parasitica] >ETM35466.1 hypothetical protein, variant 2 [Phytophthora parasitica] >ETP05156.1 hypothetical protein, variant 2 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 207.6 bits (527), Expect = 9.100e-50
Identity = 116/312 (37.18%), Postives = 165/312 (52.88%), Query Frame = 0 
Query:   31 YTSAREHRRAAVLQRQRAARRELTYNLRALISNAIDKEEPGAETGEDDSRQDQALEETCDGAPMAMDEGGAQGSTQYFDEKGAHPNKRVRGKQAQFYASQFSIPEWMVDIPRDLNGHLSTEEGGGWFVMPRPEGKRCLMVASGGITVTRLMNGEVLHRFPSALPNGSPRAKGPKDGWTLLDCIYSEASRTYFVLDLLCWRKMELYDCTCEFRFFILRSKFEEELGRSXXXXXXXXXXXXXXXXXXXXXXGGYLLEPLPYFECDSNGLRRAYGDYAPFVRDGLLFWSKQSYVEIGPSPLVLLWKDMKCSRYFL 343
            +T     RR   L +QR ARR+LT + R L   A  +E P    GED    D  +  T                      K     +RV+ ++  F + Q   PEW++DIP+DLNG+ S   G GW+V+PRPEGKRCL+VA+GG T+ R+ +G +L +FPSALP GS +     DG+ +LDCI+ E + T++VLD++CW+   LY+CT EFR + +R K  E                             +   P+P +E D  G+  AY    PF++DGLLF+ K  + E+G SPL L+WKD   SR+F+
Sbjct:   12 WTKDAAARRRETLAQQRQARRDLTAHARQL---AQQQEPPSPHGGEDAQPMDGVISAT---------------------SKRRTREERVKQRREHF-SKQLMAPEWLIDIPKDLNGNGSL-LGEGWYVLPRPEGKRCLVVANGGNTIARIPSGSILKKFPSALPCGSHKTNKSNDGYCILDCIFQEQNETFYVLDVMCWKGYLLYNCTTEFRLYWMRDKLSE------------------GATGMTAPANPFRFLPVPSYESDQEGIMAAYSTTYPFLKDGLLFYMKAGHYEMGLSPLALVWKDANTSRFFV 279
The following BLAST results are available for this feature:
BLAST of NO02G02560 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM30366.11.300e-8842.18hypothetical protein Naga_100026g47 [Nannochlorops... [more]
GAX96850.11.300e-5633.69snurportin-like protein, partial [Pythium insidios... [more]
CCA19475.11.100e-5230.77snurportinlike protein putative [Albugo laibachii ... [more]
XP_008912978.17.400e-5230.41hypothetical protein PPTG_17099 [Phytophthora para... [more]
XP_024577755.17.400e-5231.39m3G-cap-specific nuclear import receptor (Snurport... [more]
ETI35329.12.200e-5131.14hypothetical protein F443_18322 [Phytophthora para... [more]
ETL29015.12.200e-5131.14hypothetical protein L916_17736 [Phytophthora para... [more]
KUF80976.12.200e-5131.14Snurportin-1 [Phytophthora nicotianae][more]
XP_008912982.19.100e-5037.18hypothetical protein, variant 4 [Phytophthora para... [more]
ETL29019.19.100e-5037.18hypothetical protein, variant 4 [Phytophthora para... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR002ngnoR002Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006902NSK006902Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G02560.1NO02G02560.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|550078gene_846Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100026g47gene258Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G02560.1NO02G02560.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G02560 ID=NO02G02560|Name=NO02G02560|organism=Nannochloropsis oceanica|type=gene|length=1524bp
ATGATGCATCGACCGCCATACAAGCATGCTGCCCCATCCCAGCAGCCGCA
GATGCGGCGGATACCACCCAAGCAGAAAGCAGCCAGCGCTTATACCTCGG
CGCGCGAGCATCGACGTGCAGCCGTCTTACAGCGGCAGCGGGCGGCGCGG
AGAGAATTGACATACAATCTGCGGGCCTTAATCAGCAATGCAATAGACAA
AGAGGAGCCTGGGGCCGAGACAGGGGAGGACGACTCGAGGCAAGACCAAG
CCTTGGAGGAAACGTGCGACGGCGCACCTATGGCAATGGACGAAGGGGGA
GCGCAAGGGTCAACCCAATATTTTGATGAAAAAGGAGCGCATCCAAACAA
ACGGGTGCGGGGTAAGCAGGCCCAATTTTATGCCAGCCAGTTTTCCATCC
CAGAATGGATGGTAGATATTCCCCGAGATTTAAACGGACACCTCTCGACT
GAAGAAGGAGGAGGTTGGTTCGTCATGCCACGCCCGGAGGGGAAACGATG
CCTGATGGTGGCTTCGGGCGGAATCACCGTGACACGGCTGATGAATGGGG
AGGTGCTCCATCGATTTCCATCCGCCTTGCCCAACGGTTCACCACGCGCC
AAGGGTCCCAAAGATGGGTGGACGTTGCTTGATTGCATTTATTCGGAGGC
GAGCCGGACGTACTTTGTGCTGGATTTGCTGTGCTGGCGGAAGATGGAAC
TTTATGACTGTACGTGTGAGTTTCGTTTTTTTATACTGCGATCCAAATTT
GAGGAGGAACTGGGAAGGTCTGGAGCAGGAGGAGGAGCAGGAGGAGCAGG
AGGAGCAGGAGGAGCAGGAGGAGGAGCAGAAGCAGCAGGAGGGTACCTTT
TGGAGCCTTTGCCCTACTTCGAATGTGATTCTAACGGCCTACGACGCGCG
TATGGTGATTACGCTCCCTTTGTTCGGGATGGGTTGCTGTTTTGGAGTAA
GCAGAGCTACGTTGAGATAGGCCCGAGTCCGCTTGTATTGCTCTGGAAGG
ATATGAAATGCTCGCGGTACTTTCTTCGGGAAACACAACAACAGCAGCAG
CAGCAGCACCACCACCACCCACCATTAAGCTGTGTATTATTGGTGCAGAA
GGCAAAGGGTGAGGATGGGGAGAAGAGTGGATACGTTCTGAGCACACTGG
ACGACGTGGTCTTGGGCCGGACGACGCTGGAGGAGGTGAATGCGTGGGGC
CTCGGACAAGTGCAAGACGGAAGGGCGGGCGGAGAGAGAGAGGAAGAAGA
ACAAATGTTGATCCGATTTTGGTATGAAGGAGCAACGGAGGACGAGAAAA
ATAACCAGCAGCAGTTGCATGGGCTTCAGTTTGACAGGAAGTGCTCGTCG
AAGAGGGCGGTGGCTGATGCCTGGAGTAAGCTCCTGTTCCACGCTCGGGC
CAAGAAGGGGATAAGGGAGGGAGGGACGGCGGTGACGTTTGATACGTTGT
TGCAGGCGGTTGAGAGGCCTGTACAAAAGGAGGTGAGGGAGGAATCGAAT
GACGTCGAAGGGATGATGTGCTGA
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protein sequence of NO02G02560.1

>NO02G02560.1-protein ID=NO02G02560.1-protein|Name=NO02G02560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=508bp
MMHRPPYKHAAPSQQPQMRRIPPKQKAASAYTSAREHRRAAVLQRQRAAR
RELTYNLRALISNAIDKEEPGAETGEDDSRQDQALEETCDGAPMAMDEGG
AQGSTQYFDEKGAHPNKRVRGKQAQFYASQFSIPEWMVDIPRDLNGHLST
EEGGGWFVMPRPEGKRCLMVASGGITVTRLMNGEVLHRFPSALPNGSPRA
KGPKDGWTLLDCIYSEASRTYFVLDLLCWRKMELYDCTCEFRFFILRSKF
EEELGRSGAGGGAGGAGGAGGAGGGAEAAGGYLLEPLPYFECDSNGLRRA
YGDYAPFVRDGLLFWSKQSYVEIGPSPLVLLWKDMKCSRYFLRETQQQQQ
QQHHHHPPLSCVLLVQKAKGEDGEKSGYVLSTLDDVVLGRTTLEEVNAWG
LGQVQDGRAGGEREEEEQMLIRFWYEGATEDEKNNQQQLHGLQFDRKCSS
KRAVADAWSKLLFHARAKKGIREGGTAVTFDTLLQAVERPVQKEVREESN
DVEGMMC*
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Synonyms
Publications