NO02G01280, NO02G01280 (gene) Nannochloropsis oceanica

Overview
NameNO02G01280
Unique NameNO02G01280
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1325
Alignment locationchr2:387598..388922 +

Link to JBrowse

Properties
Property NameValue
DescriptionT-snare family protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:387598..388922 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0016192vesicle-mediated transport
GO:0016043cellular component organization
GO:0006810transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016020membrane
GO:0005623cell
Vocabulary: INTERPRO
TermDefinition
IPR010989t-SNARE
IPR006011Syntaxin_N
IPR000727T_SNARE_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Homology
BLAST of NO02G01280 vs. NCBI_GenBank
Match: OQR89631.1 (syntaxin [Thraustotheca clavata])

HSP 1 Score: 224.9 bits (572), Expect = 3.500e-55
Identity = 133/291 (45.70%), Postives = 177/291 (60.82%), Query Frame = 0
Query:    1 MNDRLTELRAKGGGGTGSMPSDSVGIDMTNLHGGPAAAAATGAAGSTQPQFMNEFFTDVEATKEDINAIKEAIRRMNTIHQEAFLATTGPKEAKLSHELNAVIQXXXXXXXXXXXXXXXXXXXTTKLRQDTRCNPSQLRIRDNLTNTLTRKFVDVMKDYQNAQTKYKAFIKNKVQRQVQIVKPDASPEEIEAVFKSGGGADEVITQAILKGANESIRSVYQNVADKYQDVLTLEASIAELHQMFLDFALLVEQQGELLDQIEYQVKGAANYVEDGTLQVQGAIESAKKARK 292
            M+DRL EL  +         S  V IDM+             ++   +P+FM +FF DVE  + D+N I  A  R+  ++ +A +AT   +E  +S EL  VI                    + + ++D     S++RIRDN++ TLTRKF+D MK+YQ AQ K+KA +KNKV+RQVQIVKPDAS +EI+ V +S      +   AIL+G+ ESI+ VY N  DKYQDVL LE S+AELHQMFLD ALLVEQQGE+LDQIE+QVK A+NY+E G  +V  AI+S K  RK
Sbjct:    1 MHDRLAELTGR---------SSDVTIDMSET-----------SSEIARPKFMEKFFVDVEDMQADLNKIVLATDRICELNHQALIATAAGEEQTISQELCLVIDGTNKIAAHGKGLLELIKKESAEKKKDKNVAASEIRIRDNMSTTLTRKFMDTMKEYQKAQQKFKADMKNKVKRQVQIVKPDASEQEIDMVMRS-ADPGAIYRSAILQGSAESIKEVYMNCHDKYQDVLKLEQSVAELHQMFLDLALLVEQQGEMLDQIEFQVKAASNYIESGNKEVTKAIQSQKSLRK 270          
BLAST of NO02G01280 vs. NCBI_GenBank
Match: GAX24245.1 (syntaxin 1B/2/3 [Fistulifera solaris])

HSP 1 Score: 224.9 bits (572), Expect = 3.500e-55
Identity = 124/248 (50.00%), Postives = 162/248 (65.32%), Query Frame = 0
Query:   48 QPQFMNEFFTDVEATKEDINAIKEAIRRMNTIHQEAFLATTGPKEAKLSHELNAVIQXXXXXXXXXXXXXXXXXXXTTKLRQDTRCNPSQLRIRDNLTNTLTRKFVDVMKDYQNAQTKYKAFIKNKVQRQVQIVKPDASPEEIEAVFKSGGGADEVITQAILK-GANESIRSVYQNVADKYQDVLTLEASIAELHQMFLDFALLVEQQGELLDQIEYQVKGAANYVEDGTLQVQGAIESAKKARKYQC 295
            Q + M+ FF +VE+ K DI AI +A + +  I+  A  AT+  +E +LS +L  ++                    T KL+++ +   S LR+R+NL NTLTRKF+D MK YQ AQ KYK  IK KV RQVQIVKPDA+ E+I+AV +S GG D +  + IL  G N+ +++ Y+ VA KYQDVL LE S+AELHQMFLDFALL EQQGELLDQIE+QVK A +YVE+  + V  AIE  +K RK QC
Sbjct:   34 QAKHMDHFFREVESIKRDIEAITKATKSIGNINDRALQATSTEEENELSRKLRPLVDQTNKQAKRTKTLLGLLKEETQKLQENKQIKQSDLRVRENLCNTLTRKFIDEMKAYQAAQQKYKTDIKKKVARQVQIVKPDATDEDIDAVMRSEGGRDALYREQILAGGVNDQVKTTYEKVAGKYQDVLALEHSVAELHQMFLDFALLTEQQGELLDQIEFQVKQAGDYVEEANVDVYEAIEYQRKIRKKQC 281          
BLAST of NO02G01280 vs. NCBI_GenBank
Match: XP_009831452.1 (hypothetical protein H257_07577 [Aphanomyces astaci] >ETV78733.1 hypothetical protein H257_07577 [Aphanomyces astaci])

HSP 1 Score: 224.2 bits (570), Expect = 5.900e-55
Identity = 136/291 (46.74%), Postives = 177/291 (60.82%), Query Frame = 0
Query:    1 MNDRLTELRAKGGGGTGSMPSDSVGIDMTNLHGGPAAAAATGAAGSTQPQFMNEFFTDVEATKEDINAIKEAIRRMNTIHQEAFLATTGPKEAKLSHELNAVIQXXXXXXXXXXXXXXXXXXXTTKLRQDTRCNPSQLRIRDNLTNTLTRKFVDVMKDYQNAQTKYKAFIKNKVQRQVQIVKPDASPEEIEAVFKSGGGADEVITQAILKGANESIRSVYQNVADKYQDVLTLEASIAELHQMFLDFALLVEQQGELLDQIEYQVKGAANYVEDGTLQVQGAIESAKKARK 292
            M+DRL+EL  K   G        V ID+        AA  T  A   +P+FM +FF DVE  + D+  I  A  R+  ++ +A LAT   +E  +S EL  VI                    T   ++D     S++RIRDN++ TLTRKF+D MKDYQ AQ ++KA +KNKV+RQVQIVKPDAS  EI+ V +S      +   AIL+G+N+SI+ VY N  DKYQDVL LE S+AELHQMFLD ALLVEQQGE+LDQIE+QVK A+NY++ G  +V  A++S K  RK
Sbjct:    1 MHDRLSELTGKAAAG-------DVAIDV--------AAENTNVA---RPKFMEKFFVDVEEMQADLGKITVATDRIAELNHQALLATATGEEQIISQELCLVIDTTNKIAARAKGLLELIKKETADKKKDKNAPASEMRIRDNMSTTLTRKFMDTMKDYQKAQQRFKADMKNKVKRQVQIVKPDASEHEIDMVMRS-ADPGAIYRSAILQGSNDSIKEVYMNCHDKYQDVLKLEQSVAELHQMFLDLALLVEQQGEMLDQIEFQVKTASNYIDAGNKEVTKALKSQKSMRK 272          
BLAST of NO02G01280 vs. NCBI_GenBank
Match: XP_009517017.1 (hypothetical protein PHYSODRAFT_294753 [Phytophthora sojae] >EGZ29742.1 hypothetical protein PHYSODRAFT_294753 [Phytophthora sojae])

HSP 1 Score: 223.0 bits (567), Expect = 1.300e-54
Identity = 133/297 (44.78%), Postives = 181/297 (60.94%), Query Frame = 0
Query:    1 MNDRLTELRAKGGGGTGSMPSDSVGIDMTNLHGGPAAAAATGAAGSTQPQFMNEFFTDVEATKEDINAIKEAIRRMNTIHQEAFLATTGPKEAKLSHELNAVIQXXXXXXXXXXXXXXXXXXXTTKLRQDTRCNPSQLRIRDNLTNTLTRKFVDVMKDYQNAQTKYKAFIKNKVQRQVQIVKPDASPEEIEAVFKSGGGADEVITQAILKGANESIRSVYQNVADKYQDVLTLEASIAELHQMFLDFALLVEQQGELLDQIEYQVKGAANYVEDGTLQVQGAIESAKKARKYQCCML 298
            M DRL E++ K      + P+D V ID+                G  +P+FM +FF DVE  + D+  I  A ++++ ++ +A LAT+  +E  +S +L  VI+                   + + +++     S++RIRDN+  TLT+KF+D MKDYQ AQ KYK+ +KNKV+RQVQIVKPDAS  EI+AV +SG       +  +  GA ESI  V+ +  DKYQDVL LE S+AELHQMFLD ALLVEQQGELLDQI++QV+ AANYVE G  +VQ AI+  K  RK  CC+L
Sbjct:    1 MLDRLAEIKGK------APPADQVAIDVE-------------PRGVVRPKFMEQFFKDVEEMQMDLANISLASQQISELNGKAILATSNTEEQAISTQLGFVIETTNKLAAHAKGLLEMLKKESAERKKEKGTPLSEIRIRDNMCATLTKKFMDSMKDYQKAQQKYKSDMKNKVKRQVQIVKPDASEAEIDAVMRSGDPGSIYKSAILQGGAAESITDVFLHCQDKYQDVLKLEQSVAELHQMFLDLALLVEQQGELLDQIDHQVRTAANYVEQGNQEVQKAIKYQKAHRKKMCCLL 278          
BLAST of NO02G01280 vs. NCBI_GenBank
Match: GAY05030.1 (syntaxin, putative [Pythium insidiosum])

HSP 1 Score: 221.1 bits (562), Expect = 5.000e-54
Identity = 128/262 (48.85%), Postives = 168/262 (64.12%), Query Frame = 0
Query:   37 AAAATGAAGS-TQPQFMNEFFTDVEATKEDINAIKEAIRRMNTIHQEAFLATTGPKEAKLSHELNAVIQXXXXXXXXXXXXXXXXXXXTTKLRQDTRCNPSQLRIRDNLTNTLTRKFVDVMKDYQNAQTKYKAFIKNKVQRQVQIVKPDASPEEIEAVFKSGGGADEVITQAILKGANESIRSVYQNVADKYQDVLTLEASIAELHQMFLDFALLVEQQGELLDQIEYQVKGAANYVEDGTLQVQGAIESAKKARKYQCCML 298
            AA + G      +P+FM +FF DVE  + D+  I    +++  ++Q A LAT+  +E  +S+EL  VI+                   +   ++D     S++RIRDN+  TLT+KF+D MKDYQ AQ KYK  +K KV+RQVQIVKPDAS  EI+AV +S      +   AIL+G  ++IR VY NV DKYQDVL LE S+AELHQMFLD ALLVEQQGE+LDQIE+QV+ AANYVE G   V  A++S K ARK +CC+L
Sbjct:   18 AAVSVGRPNEVVRPKFMEQFFKDVEDMQSDLANINLGTQKIAELNQRAVLATSNTEEQAISNELTIVIETSNRHATHAKGILEALKKESADRKKDKSTPVSEIRIRDNMCATLTKKFMDCMKDYQKAQQKYKNDMKAKVKRQVQIVKPDASEAEIDAVMRS-PDPGSIYKSAILQGPADAIRDVYLNVQDKYQDVLRLEQSVAELHQMFLDLALLVEQQGEMLDQIEFQVRTAANYVEQGNQXVVKALKSQKSARKKKCCIL 278          
BLAST of NO02G01280 vs. NCBI_GenBank
Match: ETO78001.1 (hypothetical protein F444_06889 [Phytophthora parasitica P1976] >ETP19072.1 hypothetical protein F441_06823 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 220.7 bits (561), Expect = 6.500e-54
Identity = 124/253 (49.01%), Postives = 163/253 (64.43%), Query Frame = 0
Query:   45 GSTQPQFMNEFFTDVEATKEDINAIKEAIRRMNTIHQEAFLATTGPKEAKLSHELNAVIQXXXXXXXXXXXXXXXXXXXTTKLRQDTRCNPSQLRIRDNLTNTLTRKFVDVMKDYQNAQTKYKAFIKNKVQRQVQIVKPDASPEEIEAVFKSGGGADEVITQAILKGANESIRSVYQNVADKYQDVLTLEASIAELHQMFLDFALLVEQQGELLDQIEYQVKGAANYVEDGTLQVQGAIESAKKARKYQCCML 298
            G  +P+FM  FF DVE  + D+  I  A +++  ++ +A LAT+  +E  +S EL  VI+                   + + ++D     S++RIRDN+  TLT+KF+D MK+YQ AQ KYK+ +KNKV+RQVQIVKPDAS  EI+AV +SG       +  +  GA ESI  V+ +  DKYQDVL LE S+AELHQMFLD ALLVEQQGELLDQI+YQV+ AANYVE G  +VQ AI+  K  RK  CC+L
Sbjct:    5 GVVRPKFMEVFFKDVEEMQMDLANISLASQQITELNSKAILATSNTEEQAISTELGFVIETTNKLAAHAKGLLERLKKESAERKKDKNTPLSEVRIRDNMCATLTKKFMDAMKEYQKAQQKYKSDMKNKVKRQVQIVKPDASEAEIDAVMRSGDPGSIYKSAILQGGAAESITDVFLHCQDKYQDVLKLEQSVAELHQMFLDLALLVEQQGELLDQIDYQVRTAANYVEQGNKEVQKAIKHQKSYRKKMCCLL 257          
BLAST of NO02G01280 vs. NCBI_GenBank
Match: ETP47017.1 (hypothetical protein F442_06855 [Phytophthora parasitica P10297])

HSP 1 Score: 220.7 bits (561), Expect = 6.500e-54
Identity = 124/253 (49.01%), Postives = 163/253 (64.43%), Query Frame = 0
Query:   45 GSTQPQFMNEFFTDVEATKEDINAIKEAIRRMNTIHQEAFLATTGPKEAKLSHELNAVIQXXXXXXXXXXXXXXXXXXXTTKLRQDTRCNPSQLRIRDNLTNTLTRKFVDVMKDYQNAQTKYKAFIKNKVQRQVQIVKPDASPEEIEAVFKSGGGADEVITQAILKGANESIRSVYQNVADKYQDVLTLEASIAELHQMFLDFALLVEQQGELLDQIEYQVKGAANYVEDGTLQVQGAIESAKKARKYQCCML 298
            G  +P+FM  FF DVE  + D+  I  A +++  ++ +A LAT+  +E  +S EL  VI+                   + + ++D     S++RIRDN+  TLT+KF+D MK+YQ AQ KYK+ +KNKV+RQVQIVKPDAS  EI+AV +SG       +  +  GA ESI  V+ +  DKYQDVL LE S+AELHQMFLD ALLVEQQGELLDQI+YQV+ AANYVE G  +VQ AI+  K  RK  CC+L
Sbjct:    5 GVVRPKFMEVFFKDVEEMQMDLANISLASQQITELNSKAILATSNTEEQAISTELGFVIETTNKLAAHAKGILERLKKESAERKKDKNTPLSEVRIRDNMCATLTKKFMDAMKEYQKAQQKYKSDMKNKVKRQVQIVKPDASEAEIDAVMRSGDPGSIYKSAILQGGAAESITDVFLHCQDKYQDVLKLEQSVAELHQMFLDLALLVEQQGELLDQIDYQVRTAANYVEQGNKEVQKAIKHQKSYRKKMCCLL 257          
BLAST of NO02G01280 vs. NCBI_GenBank
Match: OWZ19717.1 (Syntaxin [Phytophthora megakarya])

HSP 1 Score: 219.5 bits (558), Expect = 1.500e-53
Identity = 126/263 (47.91%), Postives = 166/263 (63.12%), Query Frame = 0
Query:   35 PAAAAATGAAGSTQPQFMNEFFTDVEATKEDINAIKEAIRRMNTIHQEAFLATTGPKEAKLSHELNAVIQXXXXXXXXXXXXXXXXXXXTTKLRQDTRCNPSQLRIRDNLTNTLTRKFVDVMKDYQNAQTKYKAFIKNKVQRQVQIVKPDASPEEIEAVFKSGGGADEVITQAILKGANESIRSVYQNVADKYQDVLTLEASIAELHQMFLDFALLVEQQGELLDQIEYQVKGAANYVEDGTLQVQGAIESAKKARKYQCCML 298
            PA   A    G  +P+FM  FF DVE  +  +  I  A ++++ ++ +A LAT+  +E  +S EL  VI+                   + + +++     S++RIRDN+  TLT+KF+D MKDYQ AQ KYK+ +KNKV+RQVQIVKPDAS  EI+AV +SG       +  +  GA ESI  V+ +  DKYQDVL LE S+AELHQMFLD ALLVEQQGELLDQI+YQV+ AANYVE G  +VQ AI+  K  RK  CC+L
Sbjct:   14 PADQVAINVRGVVRPKFMEAFFKDVEDMQMGLANISLASQQISELNGKAILATSNVEEQAISTELGLVIETTNKLAGHAKGVLELLKKESAERKREKGTPLSEIRIRDNMCATLTKKFMDTMKDYQKAQQKYKSDMKNKVKRQVQIVKPDASEAEIDAVMRSGDPGSIYKSAILQGGAAESITDVFLHCQDKYQDVLKLEQSVAELHQMFLDLALLVEQQGELLDQIDYQVRSAANYVEQGNQEVQKAIKYQKAHRKKMCCLL 276          
BLAST of NO02G01280 vs. NCBI_GenBank
Match: POM58613.1 (Sulfate Permease (SulP) Family [Phytophthora palmivora var. palmivora])

HSP 1 Score: 219.5 bits (558), Expect = 1.500e-53
Identity = 124/253 (49.01%), Postives = 164/253 (64.82%), Query Frame = 0
Query:   45 GSTQPQFMNEFFTDVEATKEDINAIKEAIRRMNTIHQEAFLATTGPKEAKLSHELNAVIQXXXXXXXXXXXXXXXXXXXTTKLRQDTRCNPSQLRIRDNLTNTLTRKFVDVMKDYQNAQTKYKAFIKNKVQRQVQIVKPDASPEEIEAVFKSGGGADEVITQAILKGANESIRSVYQNVADKYQDVLTLEASIAELHQMFLDFALLVEQQGELLDQIEYQVKGAANYVEDGTLQVQGAIESAKKARKYQCCML 298
            G  +P+FM  FF DVE  + D+  I  A ++++ ++ +A LAT+  +E  +S EL  VI+                   + + +++     S++RIRDN+  TLT+KF+D MKDYQ AQ KYK+ +KNKV+RQVQIVKPDAS  EI+AV +SG       +  +  GA ESI  V+ +  DKYQDVL LE S+AELHQMFLD ALLVEQQGELLDQI+YQV+ AANYVE G  +VQ AI+  K  RK  CC+L
Sbjct:  834 GVVRPKFMEAFFKDVEDMQMDLANISLASQQISELNGKAILATSNVEEQAISTELGFVIETTNKLAAHAKGLLEMLKKESAERKKEKGTPLSEIRIRDNMCATLTKKFMDAMKDYQKAQQKYKSDMKNKVKRQVQIVKPDASEAEIDAVMRSGDPGSIYKSAILQGGAAESITDVFLHCQDKYQDVLKLEQSVAELHQMFLDLALLVEQQGELLDQIDYQVRSAANYVEQGNQEVQKAIKYQKAHRKKMCCLL 1086          
BLAST of NO02G01280 vs. NCBI_GenBank
Match: OEU14036.1 (t-SNARE [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 218.8 bits (556), Expect = 2.500e-53
Identity = 118/247 (47.77%), Postives = 163/247 (65.99%), Query Frame = 0
Query:   52 MNEFFTDVEATKEDINAIKEAIRRMNTIHQEAFLATTGPKEAKLSHELNAVIQXXXXXXXXXXXXXXXXXXXTTKLRQDTRCNPSQLRIRDNLTNTLTRKFVDVMKDYQNAQTKYKAFIKNKVQRQVQIVKPDASPEEIEAVFKSGGGADEVITQAILK-GANESIRSVYQNVADKYQDVLTLEASIAELHQMFLDFALLVEQQGELLDQIEYQVKGAANYVEDGTLQVQGAIESAKKARKYQCCML 298
            M+ FF++V+    DI AI +A + +++I++++  +TT  +E KLS +L  +I                    T KL+++ + N S +R+R+N+  TLT+KF+D MK YQ +Q KYK  IK KV+RQVQ++KPDA+ EEI+ V KS GG D +  Q+IL  G N+ I++ Y  VA KYQDVLTLE S+AELHQMFLDFALL EQQGELLDQIE+ V  A +YVE+  ++   AIE  K  RK QC +L
Sbjct:    1 MSSFFSEVDRVNADIKAIAKASKEIDSINEQSMRSTTTAEEQKLSKKLGPLIGTTNKSAKRTKDVLGLLKQETDKLKEEGKLNASNVRVRENMNTTLTKKFIDEMKIYQQSQQKYKTDIKKKVKRQVQVIKPDATDEEIDDVMKSEGGRDALYKQSILAGGVNDQIKTTYAKVAGKYQDVLTLEQSVAELHQMFLDFALLTEQQGELLDQIEFNVTQATDYVEEANVETHTAIEYQKSIRKKQCWIL 247          
The following BLAST results are available for this feature:
BLAST of NO02G01280 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
OQR89631.13.500e-5545.70syntaxin [Thraustotheca clavata][more]
GAX24245.13.500e-5550.00syntaxin 1B/2/3 [Fistulifera solaris][more]
XP_009831452.15.900e-5546.74hypothetical protein H257_07577 [Aphanomyces astac... [more]
XP_009517017.11.300e-5444.78hypothetical protein PHYSODRAFT_294753 [Phytophtho... [more]
GAY05030.15.000e-5448.85syntaxin, putative [Pythium insidiosum][more]
ETO78001.16.500e-5449.01hypothetical protein F444_06889 [Phytophthora para... [more]
ETP47017.16.500e-5449.01hypothetical protein F442_06855 [Phytophthora para... [more]
OWZ19717.11.500e-5347.91Syntaxin [Phytophthora megakarya][more]
POM58613.11.500e-5349.01Sulfate Permease (SulP) Family [Phytophthora palmi... [more]
OEU14036.12.500e-5347.77t-SNARE [Fragilariopsis cylindrus CCMP1102][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR033ncniR033Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006744NSK006744Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G01280.1NO02G01280.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573862gene_708Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100013g77gene139Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G01280.1NO02G01280.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G01280 ID=NO02G01280|Name=NO02G01280|organism=Nannochloropsis oceanica|type=gene|length=1325bp
TCACACTCACGACACACACGCCACACCTCAGACCACGACGACGCTATGAA
CGACCGCTTGACAGAACTTCGGGCTAAGGGCGGCGGCGGGACCGGGAGCA
TGCCTTCCGATAGCGTGGGCATCGACATGACAAATCTGCATGGAGGCCCA
GCAGCCGCGGCTGCCACCGGTGCGGCCGGCTCAACTCAGCCTCAATTCAT
GAACGAGTTTTTCACGGACGTGGAGGCGACGAAGGAGGACATTAATGCCA
TCAAAGAAGCGATTCGGCGCATGAACACTATCCATCAAGAGGCGTTTTTG
GCCACCACGGGCCCGAAGGAAGCAAAGCTAAGCCATGAACTCAATGCGGT
CATTCAAGAGACCAATCCGAAAGCCGCGCGTGCCAAGGACATGCTCAACC
AGATGAAGGATGAGACGACCAAATTGCGGCAAGACACCAGATGTAACCCC
TCCCAGCTTCGGATACGCGACAATCTGACCAATACACTCACTCGTAAATT
TGTGGATGTGATGAAGGACTACCAGAATGCCCAAACCAAATACAAAGCCT
TCATCAAAAATAAAGTCCAACGGCAGGTTCAGATCGTCAAGCCCGACGCC
TCGCCCGAGGAGATCGAGGCAGTATTCAAGTCGGGGGGAGGGGCAGATGA
GGTGATAACTCAAGCAATTCTGAAGGGTGCAAACGAGAGCATTCGAAGCG
TGTATCAGAATGTGGCTGACAAGTACCAAGACGTCTTGACCTTGGAAGCG
AGTATTGCGGAGCTGCACCAGATGTTTTTGGATTTTGCGTTGTTGGTGGA
GCAGCAGGGAGAGTTGCTTGATCAGATTGAGTATCAGGTCAAGGGGGCTG
CAAATTATGTGGAAGACGGGACGTTGCAGGTACAAGGAGCAATCGAGAGT
GCGAAAAAGgtatgtcaacgaggggtgtatttgggtcggatgcgaagagt
ggtgtgtggaatgataatggacgggatggggattttagttggggtttacg
tggttgttaatagggcaaggtgtcggcacttactgtttttcctcacttaa
gtgttgctttgtctctattgtctctaactcgctctgatcccctcgtcttc
tctcaactcacaacccacagGCGCGGAAGTACCAGTGTTGTATGCTCGTC
TGTGTGATGGTGTTGGTGGGTATACTAGTCTTGGTCCTTTTTGTTTTCAG
GAAGCAAGTGGGTGTGTAAGAGGAGAGTAAAAGCAAAGAGGAATTACTGA
TGATGTCCGGCGGTCGACGACGAGAGGCATGCACGCACACAAAATATGAA
TGTTAAAACTCTGTAGAAGCCGATG
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protein sequence of NO02G01280.1

>NO02G01280.1-protein ID=NO02G01280.1-protein|Name=NO02G01280.1|organism=Nannochloropsis oceanica|type=polypeptide|length=321bp
MNDRLTELRAKGGGGTGSMPSDSVGIDMTNLHGGPAAAAATGAAGSTQPQ
FMNEFFTDVEATKEDINAIKEAIRRMNTIHQEAFLATTGPKEAKLSHELN
AVIQETNPKAARAKDMLNQMKDETTKLRQDTRCNPSQLRIRDNLTNTLTR
KFVDVMKDYQNAQTKYKAFIKNKVQRQVQIVKPDASPEEIEAVFKSGGGA
DEVITQAILKGANESIRSVYQNVADKYQDVLTLEASIAELHQMFLDFALL
VEQQGELLDQIEYQVKGAANYVEDGTLQVQGAIESAKKARKYQCCMLVCV
MVLVGILVLVLFVFRKQVGV*
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Synonyms
Publications