NO02G01280, NO02G01280 (gene) Nannochloropsis oceanica

Overview
NameNO02G01280
Unique NameNO02G01280
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1325
Alignment locationchr2:387598..388922 +

Link to JBrowse

Properties
Property NameValue
DescriptionT-snare family protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:387598..388922 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0016192vesicle-mediated transport
GO:0016043cellular component organization
GO:0006810transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016020membrane
GO:0005623cell
Vocabulary: INTERPRO
TermDefinition
IPR010989t-SNARE
IPR006011Syntaxin_N
IPR000727T_SNARE_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Homology
BLAST of NO02G01280 vs. NCBI_GenBank
Match: EWM30540.1 (t-snare family protein [Nannochloropsis gaditana])

HSP 1 Score: 468.8 bits (1205), Expect = 1.400e-128
Identity = 251/323 (77.71%), Postives = 269/323 (83.28%), Query Frame = 0
Query:    1 MNDRLTELRAKGGGGTGSMPSDSVGIDMTNLHG---GPAAAAATGAAGSTQPQFMNEFFTDVEATKEDINAIKEAIRRMNTIHQEAFLATTGPKEAKLSHELNAVIQXXXXXXXXXXXXXXXXXXXTTKLRQDTRCNPSQLRIRDNLTNTLTRKFVDVMKDYQNAQTKYKAFIKNKVQRQVQIVKPDASPEEIEAVFKSGGGADEVITQAILKGANESIRSVYQNVADKYQDVLTLEASIAELHQMFLDFALLVEQQGELLDQIEYQVKGAANYVEDGTLQVQGAIESAKKARKYQCCMLVCVXXXXXXXXXXLFVFRKQVGV 321
            MNDRL ELRAKGGG     PSDSVGIDMT L G   G  AA +     ++QPQ+MN+FFTDVEATKEDINAIKEAIRRM+ IHQEAFLATTGP+EAKLS ELNAVIQ                   TTKLRQD+RC PSQLRIRDNLTNTLTRKFVDVMKDYQNAQTKYKAFIK+KVQRQVQIVKPDAS EEIEAVFKSGGG D+VITQAILKGANESIR+VYQNVADKYQDVLTLEASIAELHQMFLDFALLVEQQGE+LDQIEYQVKGAANYVE+GTLQVQGAI +AKKARKYQCCMLVC+          LFVF+KQ+G+
Sbjct:   13 MNDRLAELRAKGGG----TPSDSVGIDMTRLQGRGDGAGAAPSAAVTNASQPQYMNDFFTDVEATKEDINAIKEAIRRMSGIHQEAFLATTGPREAKLSQELNAVIQETNPKAARAKKMLSKMKDETTKLRQDSRCTPSQLRIRDNLTNTLTRKFVDVMKDYQNAQTKYKAFIKDKVQRQVQIVKPDASTEEIEAVFKSGGGGDQVITQAILKGANESIRNVYQNVADKYQDVLTLEASIAELHQMFLDFALLVEQQGEMLDQIEYQVKGAANYVEEGTLQVQGAIANAKKARKYQCCMLVCIMVLVGILVLVLFVFKKQIGL 331          
BLAST of NO02G01280 vs. NCBI_GenBank
Match: EJK67895.1 (hypothetical protein THAOC_11001 [Thalassiosira oceanica])

HSP 1 Score: 239.2 bits (609), Expect = 1.800e-59
Identity = 123/249 (49.40%), Postives = 171/249 (68.67%), Query Frame = 0
Query:   46 STQPQFMNEFFTDVEATKEDINAIKEAIRRMNTIHQEAFLATTGPKEAKLSHELNAVIQXXXXXXXXXXXXXXXXXXXTTKLRQDTRCNPSQLRIRDNLTNTLTRKFVDVMKDYQNAQTKYKAFIKNKVQRQVQIVKPDASPEEIEAVFKSGGGADEVITQAILK-GANESIRSVYQNVADKYQDVLTLEASIAELHQMFLDFALLVEQQGELLDQIEYQVKGAANYVEDGTLQVQGAIESAKKARKYQ 294
            S QP+ M +FF DVEA K DI+A+ +A  ++N +  +A LAT+  +EA++S  +  +++                    + L+++ +  P+ LR+R+NL NTL RKF+D MK YQNAQ +YK  +K KV RQVQI+KPDA+ +E++ + +S GG + +  Q IL  G N+ I++ Y+ VA KYQD+LTLEAS+AELHQMFLDFALL +QQGELLDQIEYQV+ AA+YVED  + V GAIE +KK RK Q
Sbjct:   70 SQQPEHMKQFFNDVEAIKSDISAVGDATEQINALKDKAVLATSETEEAQISEMIRTLVEGTNGRAKTCKNLLGLLKEENSNLKKEEKAKPTDLRVRENLVNTLLRKFIDEMKRYQNAQQQYKTDVKKKVTRQVQIIKPDATDQEVDDIMRSEGGREALYQQQILSGGVNDQIKTQYRAVAGKYQDILTLEASVAELHQMFLDFALLTDQQGELLDQIEYQVREAADYVEDANVDVDGAIEYSKKIRKKQ 318          
BLAST of NO02G01280 vs. NCBI_GenBank
Match: XP_008614152.1 (hypothetical protein SDRG_09963 [Saprolegnia diclina VS20] >EQC32211.1 hypothetical protein SDRG_09963 [Saprolegnia diclina VS20])

HSP 1 Score: 239.2 bits (609), Expect = 1.800e-59
Identity = 140/298 (46.98%), Postives = 184/298 (61.74%), Query Frame = 0
Query:    1 MNDRLTELRAKGGGGTGSMPSDSVGIDMTNLHGGPAAAAATGAAGSTQPQFMNEFFTDVEATKEDINAIKEAIRRMNTIHQEAFLATTGPKEAKLSHELNAVIQXXXXXXXXXXXXXXXXXXXTTKLRQDTRCNPSQLRIRDNLTNTLTRKFVDVMKDYQNAQTKYKAFIKNKVQRQVQIVKPDASPEEIEAVFKSGGGADEVITQAILKGANESIRSVYQNVADKYQDVLTLEASIAELHQMFLDFALLVEQQGELLDQIEYQVKGAANYVEDGTLQVQGAIESAKKARKYQCCMLV 299
            MNDRL EL  K         S  V ID++          A+     T+P+FM +FF DVE  + D++ I  A  R+  ++ +A LAT   +E  +S EL  VI                    + + ++D     S++RIRDN++ TLTRKF+D MK+YQ AQ K+KA +KNKV+RQVQIVKPDAS +EI+ V +S      +   AIL+G+ ESI+ VY N  DKYQDVL LE S+AELHQMFLD ALLVEQQGE+LDQIE+QVK A+NY+E G  +V  AI++ K  RK QCC+LV
Sbjct:    1 MNDRLAELTGK---------SSDVTIDVSE---------ASSTTEITRPKFMEKFFVDVEDMQADLSKIGLATDRIGELNHQALLATAAGEEQTISQELCLVIDNSNKIAAHAKGMLELIKKESVEKKKDKTVAASEIRIRDNMSTTLTRKFMDTMKEYQKAQQKFKADMKNKVKRQVQIVKPDASEQEIDMVMRS-ADPGAIYRSAILQGSAESIKEVYMNCHDKYQDVLKLEQSVAELHQMFLDLALLVEQQGEMLDQIEFQVKAASNYIEAGNKEVSKAIQTQKSMRKKQCCLLV 279          
BLAST of NO02G01280 vs. NCBI_GenBank
Match: XP_012200874.1 (hypothetical protein SPRG_06672 [Saprolegnia parasitica CBS 223.65] >KDO28434.1 hypothetical protein SPRG_06672 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 238.0 bits (606), Expect = 4.000e-59
Identity = 139/298 (46.64%), Postives = 184/298 (61.74%), Query Frame = 0
Query:    1 MNDRLTELRAKGGGGTGSMPSDSVGIDMTNLHGGPAAAAATGAAGSTQPQFMNEFFTDVEATKEDINAIKEAIRRMNTIHQEAFLATTGPKEAKLSHELNAVIQXXXXXXXXXXXXXXXXXXXTTKLRQDTRCNPSQLRIRDNLTNTLTRKFVDVMKDYQNAQTKYKAFIKNKVQRQVQIVKPDASPEEIEAVFKSGGGADEVITQAILKGANESIRSVYQNVADKYQDVLTLEASIAELHQMFLDFALLVEQQGELLDQIEYQVKGAANYVEDGTLQVQGAIESAKKARKYQCCMLV 299
            MNDRL EL  K         S  V ID++          A+     T+P+FM +FF DVE  + D++ I  A  R+  ++ +A LAT   +E  +S EL  VI                    + + ++D     S++RIRDN++ TLTRKF+D MK+YQ AQ K+KA +KNKV+RQVQIVKPDAS +EI+ V +S      +   AIL+G+ ESI+ VY N  DKYQDVL LE S+AELHQMFLD ALLVEQQGE+LDQIE+QVK A+NY++ G  +V  AI++ K  RK QCC+LV
Sbjct:    1 MNDRLAELTGK---------SSDVMIDISE---------ASSTTEITRPKFMEKFFLDVEDMQADLSKIGHATDRIGELNHQALLATAAGEEQTISQELCLVIDSTNKIAAHAKGMLELIKKESAEKKKDKTVAASEIRIRDNMSTTLTRKFMDTMKEYQKAQQKFKADMKNKVKRQVQIVKPDASEQEIDMVMRS-ADPGAIYRSAILQGSAESIKEVYMNCHDKYQDVLKLEQSVAELHQMFLDLALLVEQQGEMLDQIEFQVKAASNYIDAGNKEVTKAIQTQKSMRKKQCCLLV 279          
BLAST of NO02G01280 vs. NCBI_GenBank
Match: ETL95743.1 (hypothetical protein L917_06499 [Phytophthora parasitica])

HSP 1 Score: 229.9 bits (585), Expect = 1.100e-56
Identity = 136/297 (45.79%), Postives = 183/297 (61.62%), Query Frame = 0
Query:    1 MNDRLTELRAKGGGGTGSMPSDSVGIDMTNLHGGPAAAAATGAAGSTQPQFMNEFFTDVEATKEDINAIKEAIRRMNTIHQEAFLATTGPKEAKLSHELNAVIQXXXXXXXXXXXXXXXXXXXTTKLRQDTRCNPSQLRIRDNLTNTLTRKFVDVMKDYQNAQTKYKAFIKNKVQRQVQIVKPDASPEEIEAVFKSGGGADEVITQAILKGANESIRSVYQNVADKYQDVLTLEASIAELHQMFLDFALLVEQQGELLDQIEYQVKGAANYVEDGTLQVQGAIESAKKARKYQCCML 298
            M DRL E++ K      + PSD V ID+        +++     G  +P+FM  FF DVE  + D+ +I  A +++  ++ +A LAT+  +E  +S EL  VI+                   + + ++D     S++RIRDN+  TLT+KF+D MK+YQ AQ KYK+ +KNKV+RQVQIVKPDAS  EI+AV +SG       +  +  GA ESI  V+ +  DKYQDVL LE S+AELHQMFLD ALLVEQQGELLDQI+YQV+ AANYVE G  +VQ AI+  K  RK  CC+L
Sbjct:    1 MLDRLAEIKGK------APPSDQVAIDVEVRVPCCYSSSLMSRRGVVRPKFMEVFFKDVEEMQMDLASISLASQQITELNSKAILATSNTEEQAISTELGFVIETTNKLAAHAKGLLERLKKESAERKKDKNTPLSEVRIRDNMCATLTKKFMDAMKEYQKAQQKYKSDMKNKVKRQVQIVKPDASEAEIDAVMRSGDPGSIYKSAILQGGAAESITDVFLHCQDKYQDVLKLEQSVAELHQMFLDLALLVEQQGELLDQIDYQVRTAANYVEQGNKEVQKAIKHQKSYRKKMCCLL 291          
BLAST of NO02G01280 vs. NCBI_GenBank
Match: ETI49272.1 (hypothetical protein F443_06819 [Phytophthora parasitica P1569] >ETM48929.1 hypothetical protein L914_06603 [Phytophthora parasitica])

HSP 1 Score: 228.8 bits (582), Expect = 2.400e-56
Identity = 136/297 (45.79%), Postives = 182/297 (61.28%), Query Frame = 0
Query:    1 MNDRLTELRAKGGGGTGSMPSDSVGIDMTNLHGGPAAAAATGAAGSTQPQFMNEFFTDVEATKEDINAIKEAIRRMNTIHQEAFLATTGPKEAKLSHELNAVIQXXXXXXXXXXXXXXXXXXXTTKLRQDTRCNPSQLRIRDNLTNTLTRKFVDVMKDYQNAQTKYKAFIKNKVQRQVQIVKPDASPEEIEAVFKSGGGADEVITQAILKGANESIRSVYQNVADKYQDVLTLEASIAELHQMFLDFALLVEQQGELLDQIEYQVKGAANYVEDGTLQVQGAIESAKKARKYQCCML 298
            M DRL E++ K      + PSD V ID+        +++     G  +P+FM  FF DVE  + D+  I  A +++  ++ +A LAT+  +E  +S EL  VI+                   + + ++D     S++RIRDN+  TLT+KF+D MK+YQ AQ KYK+ +KNKV+RQVQIVKPDAS  EI+AV +SG       +  +  GA ESI  V+ +  DKYQDVL LE S+AELHQMFLD ALLVEQQGELLDQI+YQV+ AANYVE G  +VQ AI+  K  RK  CC+L
Sbjct:    1 MLDRLAEIKGK------APPSDQVAIDVEVRVPCCYSSSLMSRRGVVRPKFMEVFFKDVEEMQMDLANISLASQQITELNSKAILATSNTEEQAISTELGFVIETTNKLAAHAKGLLERLKKESAERKKDKNTPLSEVRIRDNMCATLTKKFMDAMKEYQKAQQKYKSDMKNKVKRQVQIVKPDASEAEIDAVMRSGDPGSIYKSAILQGGAAESITDVFLHCQDKYQDVLKLEQSVAELHQMFLDLALLVEQQGELLDQIDYQVRTAANYVEQGNKEVQKAIKHQKSYRKKMCCLL 291          
BLAST of NO02G01280 vs. NCBI_GenBank
Match: GAX28392.1 (syntaxin 1B/2/3 [Fistulifera solaris])

HSP 1 Score: 228.4 bits (581), Expect = 3.100e-56
Identity = 126/250 (50.40%), Postives = 164/250 (65.60%), Query Frame = 0
Query:   46 STQPQFMNEFFTDVEATKEDINAIKEAIRRMNTIHQEAFLATTGPKEAKLSHELNAVIQXXXXXXXXXXXXXXXXXXXTTKLRQDTRCNPSQLRIRDNLTNTLTRKFVDVMKDYQNAQTKYKAFIKNKVQRQVQIVKPDASPEEIEAVFKSGGGADEVITQAILK-GANESIRSVYQNVADKYQDVLTLEASIAELHQMFLDFALLVEQQGELLDQIEYQVKGAANYVEDGTLQVQGAIESAKKARKYQC 295
            S Q + M+ FF +VE+ K+DI AI +A + +  I+  A  ATT  +E +LS +L  ++                    T KL+++ +   S LR+R+NL NTLTRKF+D MK YQ AQ KYK  IK KV RQVQIVKPDA+ E+I+AV +S GG D +  + IL  G N+ +++ Y+ VA KYQDVL LE S+AELHQMFLDFALL EQQGELLDQIE+QVK A +YVE+  + V  AIE  +K RK QC
Sbjct:   32 SKQAKHMDHFFREVESIKKDIEAITKATKSIGNINDRALQATTTEEENELSRKLRPLVDQTNKQAKRTKTLLGLLKEETQKLQENKQIKQSDLRVRENLCNTLTRKFIDEMKAYQAAQQKYKTDIKKKVARQVQIVKPDATDEDIDAVMRSEGGRDALYREQILAGGVNDQVKTTYEKVAGKYQDVLALEQSVAELHQMFLDFALLTEQQGELLDQIEFQVKQAGDYVEEANVDVYEAIEYQRKIRKKQC 281          
BLAST of NO02G01280 vs. NCBI_GenBank
Match: XP_008892483.1 (hypothetical protein PPTG_02905 [Phytophthora parasitica INRA-310] >ETK89163.1 hypothetical protein L915_06689 [Phytophthora parasitica] >ETL42573.1 hypothetical protein L916_06628 [Phytophthora parasitica] >ETN23295.1 hypothetical protein PPTG_02905 [Phytophthora parasitica INRA-310])

HSP 1 Score: 226.9 bits (577), Expect = 9.100e-56
Identity = 136/301 (45.18%), Postives = 181/301 (60.13%), Query Frame = 0
Query:    1 MNDRLTELRAKGGGGTGSMPSDSVGID----MTNLHGGPAAAAATGAAGSTQPQFMNEFFTDVEATKEDINAIKEAIRRMNTIHQEAFLATTGPKEAKLSHELNAVIQXXXXXXXXXXXXXXXXXXXTTKLRQDTRCNPSQLRIRDNLTNTLTRKFVDVMKDYQNAQTKYKAFIKNKVQRQVQIVKPDASPEEIEAVFKSGGGADEVITQAILKGANESIRSVYQNVADKYQDVLTLEASIAELHQMFLDFALLVEQQGELLDQIEYQVKGAANYVEDGTLQVQGAIESAKKARKYQCCML 298
            M DRL E++ K      + PSD V ID    +   +     +      G  +P+FM  FF DVE  + D+  I  A +++  ++ +A LAT+  +E  +S EL  VI+                   + + ++D     S++RIRDN+  TLT+KF+D MK+YQ AQ KYK+ +KNKV+RQVQIVKPDAS  EI+AV +SG       +  +  GA ESI  V+ +  DKYQDVL LE S+AELHQMFLD ALLVEQQGELLDQI+YQV+ AANYVE G  +VQ AI+  K  RK  CC+L
Sbjct:    1 MLDRLAEIKGK------APPSDQVAIDVEVRVPCCYSSSLMSRWANGRGVVRPKFMEVFFKDVEEMQMDLANISLASQQITELNSKAILATSNTEEQAISTELGFVIETTNKLAAHAKGLLERLKKESAERKKDKNTPLSEVRIRDNMCATLTKKFMDAMKEYQKAQQKYKSDMKNKVKRQVQIVKPDASEAEIDAVMRSGDPGSIYKSAILQGGAAESITDVFLHCQDKYQDVLKLEQSVAELHQMFLDLALLVEQQGELLDQIDYQVRTAANYVEQGNKEVQKAIKHQKSYRKKMCCLL 295          
BLAST of NO02G01280 vs. NCBI_GenBank
Match: XP_002896716.1 (syntaxin, putative [Phytophthora infestans T30-4] >EEY66829.1 syntaxin, putative [Phytophthora infestans T30-4])

HSP 1 Score: 226.9 bits (577), Expect = 9.100e-56
Identity = 136/297 (45.79%), Postives = 178/297 (59.93%), Query Frame = 0
Query:    1 MNDRLTELRAKGGGGTGSMPSDSVGIDMTNLHGGPAAAAATGAAGSTQPQFMNEFFTDVEATKEDINAIKEAIRRMNTIHQEAFLATTGPKEAKLSHELNAVIQXXXXXXXXXXXXXXXXXXXTTKLRQDTRCNPSQLRIRDNLTNTLTRKFVDVMKDYQNAQTKYKAFIKNKVQRQVQIVKPDASPEEIEAVFKSGGGADEVITQAILKGANESIRSVYQNVADKYQDVLTLEASIAELHQMFLDFALLVEQQGELLDQIEYQVKGAANYVEDGTLQVQGAIESAKKARKYQCCML 298
            M DRL E++ K      S P D V ID+                G  +P+FM  FF DVE  + D+  I  A +++  ++ +A LAT+  +E  +S EL  VI+                   + + ++D     S++RIRDN+  TLT+KF+D MK+YQ AQ KYK+ +KNKV+RQVQIVKPDAS  EI+AV +SG       +  +  GA ESI  V+ +  DKYQDVL LE S+AELHQMFLD ALLVEQQGELLDQI+YQV+ AANYVE G  +VQ AI+  K  RK  CC+L
Sbjct:    1 MLDRLAEIKGK------SPPGDQVAIDV----------EVRVPRGVVRPKFMEVFFKDVEEMQMDLANISLASQQITELNSKAILATSNTEEQAISTELGIVIETTNKLAAHAKGLLERLKKESAERKKDKNTPLSEVRIRDNMCATLTKKFMDAMKEYQKAQQKYKSDMKNKVKRQVQIVKPDASEAEIDAVMRSGDPGSIYKSAILQGGAAESITDVFLHCQDKYQDVLKLEQSVAELHQMFLDLALLVEQQGELLDQIDYQVRTAANYVEQGNKEVQKAIKHQKSYRKKMCCLL 281          
BLAST of NO02G01280 vs. NCBI_GenBank
Match: OQR94857.1 (syntaxin [Achlya hypogyna])

HSP 1 Score: 225.7 bits (574), Expect = 2.000e-55
Identity = 124/249 (49.80%), Postives = 164/249 (65.86%), Query Frame = 0
Query:   50 QFMNEFFTDVEATKEDINAIKEAIRRMNTIHQEAFLATTGPKEAKLSHELNAVIQXXXXXXXXXXXXXXXXXXXTTKLRQDTRCNPSQLRIRDNLTNTLTRKFVDVMKDYQNAQTKYKAFIKNKVQRQVQIVKPDASPEEIEAVFKSGGGADEVITQAILKGANESIRSVYQNVADKYQDVLTLEASIAELHQMFLDFALLVEQQGELLDQIEYQVKGAANYVEDGTLQVQGAIESAKKARKYQCCMLV 299
            +FM +FF DVE  + D+  I  A  R++ ++ +A LAT   +E  +S EL  VI                    + + ++D     S++RIRDN++ TLTRKF+D MK+YQ AQ K+KA +KNKV+RQVQIVKPDAS +EI+ V +S      +   AIL+G+ ESI+ VY N  DKYQDVL LE S+AELHQMFLD ALLVEQQGE+LD IE+QVK A+NY+E G  +V  AI++ K  RK QCC+LV
Sbjct:   21 EFMEKFFVDVEDMQADLGKIVLATDRISELNHQALLATAAGEEQTISQELCLVIDATNKIAAHAKGMLELIKKESAEKKKDKTVAASEIRIRDNMSTTLTRKFMDTMKEYQKAQQKFKADMKNKVKRQVQIVKPDASEQEIDMVMRS-ADPGAIYRSAILQGSAESIKEVYMNCHDKYQDVLKLEQSVAELHQMFLDLALLVEQQGEMLDHIEFQVKAASNYIEAGNKEVTKAIKTQKSMRKKQCCLLV 268          
The following BLAST results are available for this feature:
BLAST of NO02G01280 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM30540.11.400e-12877.71t-snare family protein [Nannochloropsis gaditana][more]
EJK67895.11.800e-5949.40hypothetical protein THAOC_11001 [Thalassiosira oc... [more]
XP_008614152.11.800e-5946.98hypothetical protein SDRG_09963 [Saprolegnia dicli... [more]
XP_012200874.14.000e-5946.64hypothetical protein SPRG_06672 [Saprolegnia paras... [more]
ETL95743.11.100e-5645.79hypothetical protein L917_06499 [Phytophthora para... [more]
ETI49272.12.400e-5645.79hypothetical protein F443_06819 [Phytophthora para... [more]
GAX28392.13.100e-5650.40syntaxin 1B/2/3 [Fistulifera solaris][more]
XP_008892483.19.100e-5645.18hypothetical protein PPTG_02905 [Phytophthora para... [more]
XP_002896716.19.100e-5645.79syntaxin, putative [Phytophthora infestans T30-4] ... [more]
OQR94857.12.000e-5549.80syntaxin [Achlya hypogyna][more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR033ncniR033Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006744NSK006744Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G01280.1NO02G01280.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573862gene_708Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100013g77gene139Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G01280.1NO02G01280.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G01280 ID=NO02G01280|Name=NO02G01280|organism=Nannochloropsis oceanica|type=gene|length=1325bp
TCACACTCACGACACACACGCCACACCTCAGACCACGACGACGCTATGAA
CGACCGCTTGACAGAACTTCGGGCTAAGGGCGGCGGCGGGACCGGGAGCA
TGCCTTCCGATAGCGTGGGCATCGACATGACAAATCTGCATGGAGGCCCA
GCAGCCGCGGCTGCCACCGGTGCGGCCGGCTCAACTCAGCCTCAATTCAT
GAACGAGTTTTTCACGGACGTGGAGGCGACGAAGGAGGACATTAATGCCA
TCAAAGAAGCGATTCGGCGCATGAACACTATCCATCAAGAGGCGTTTTTG
GCCACCACGGGCCCGAAGGAAGCAAAGCTAAGCCATGAACTCAATGCGGT
CATTCAAGAGACCAATCCGAAAGCCGCGCGTGCCAAGGACATGCTCAACC
AGATGAAGGATGAGACGACCAAATTGCGGCAAGACACCAGATGTAACCCC
TCCCAGCTTCGGATACGCGACAATCTGACCAATACACTCACTCGTAAATT
TGTGGATGTGATGAAGGACTACCAGAATGCCCAAACCAAATACAAAGCCT
TCATCAAAAATAAAGTCCAACGGCAGGTTCAGATCGTCAAGCCCGACGCC
TCGCCCGAGGAGATCGAGGCAGTATTCAAGTCGGGGGGAGGGGCAGATGA
GGTGATAACTCAAGCAATTCTGAAGGGTGCAAACGAGAGCATTCGAAGCG
TGTATCAGAATGTGGCTGACAAGTACCAAGACGTCTTGACCTTGGAAGCG
AGTATTGCGGAGCTGCACCAGATGTTTTTGGATTTTGCGTTGTTGGTGGA
GCAGCAGGGAGAGTTGCTTGATCAGATTGAGTATCAGGTCAAGGGGGCTG
CAAATTATGTGGAAGACGGGACGTTGCAGGTACAAGGAGCAATCGAGAGT
GCGAAAAAGgtatgtcaacgaggggtgtatttgggtcggatgcgaagagt
ggtgtgtggaatgataatggacgggatggggattttagttggggtttacg
tggttgttaatagggcaaggtgtcggcacttactgtttttcctcacttaa
gtgttgctttgtctctattgtctctaactcgctctgatcccctcgtcttc
tctcaactcacaacccacagGCGCGGAAGTACCAGTGTTGTATGCTCGTC
TGTGTGATGGTGTTGGTGGGTATACTAGTCTTGGTCCTTTTTGTTTTCAG
GAAGCAAGTGGGTGTGTAAGAGGAGAGTAAAAGCAAAGAGGAATTACTGA
TGATGTCCGGCGGTCGACGACGAGAGGCATGCACGCACACAAAATATGAA
TGTTAAAACTCTGTAGAAGCCGATG
back to top

protein sequence of NO02G01280.1

>NO02G01280.1-protein ID=NO02G01280.1-protein|Name=NO02G01280.1|organism=Nannochloropsis oceanica|type=polypeptide|length=321bp
MNDRLTELRAKGGGGTGSMPSDSVGIDMTNLHGGPAAAAATGAAGSTQPQ
FMNEFFTDVEATKEDINAIKEAIRRMNTIHQEAFLATTGPKEAKLSHELN
AVIQETNPKAARAKDMLNQMKDETTKLRQDTRCNPSQLRIRDNLTNTLTR
KFVDVMKDYQNAQTKYKAFIKNKVQRQVQIVKPDASPEEIEAVFKSGGGA
DEVITQAILKGANESIRSVYQNVADKYQDVLTLEASIAELHQMFLDFALL
VEQQGELLDQIEYQVKGAANYVEDGTLQVQGAIESAKKARKYQCCMLVCV
MVLVGILVLVLFVFRKQVGV*
back to top
Synonyms
Publications