NO02G00980, NO02G00980 (gene) Nannochloropsis oceanica

Overview
NameNO02G00980
Unique NameNO02G00980
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length684
Alignment locationchr2:306866..307549 +

Link to JBrowse

Properties
Property NameValue
DescriptionPeptidylprolyl isomerase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:306866..307549 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR023566PPIase_FKBP
IPR001179PPIase_FKBP_dom
Vocabulary: Biological Process
TermDefinition
GO:0006464cellular protein modification process
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
Homology
BLAST of NO02G00980 vs. NCBI_GenBank
Match: EWM30547.1 (putative fkbp-type peptidyl-prolyl cis-trans isomerase chloroplastic-like protein [Nannochloropsis gaditana])

HSP 1 Score: 338.2 bits (866), Expect = 2.000e-89
Identity = 166/185 (89.73%), Postives = 174/185 (94.05%), Query Frame = 0
Query:   43 LEAEGGMSRRDAFLKTAGLLSLGLVAGSTGGLPFLPRAGAESLPSGITYEVVENGNGPVPKVGELAAIRFTGAYKGNVFDDLYKTKEPLYFRVGGNTLLKGIEEAVKVMKVGDRWKLTIPGELAFGAKGRSASPGKPRIPPMAAVEYDLTLVALPGRETEILDLDNFDENAPASDDSDPNKGLRF 228
            LEAEGGMSRRDA  KTAGLLSLGL  GS+ GL  LPRAGAE+LP GITYEV+E GNGP+P+VGELAAIRFTGAYK NVFDDLYKTKEPLYFRVGGNTLLKGIEEAVKVMKVGDRWKLTIPGELAFGAKGRSASPGKPRIPPMA VEYDLTLVALPGRETE++DLD+FDENAPASDDSDPNKGLRF
Sbjct:   45 LEAEGGMSRRDALFKTAGLLSLGLAMGSSRGLISLPRAGAETLPGGITYEVLEKGNGPIPQVGELAAIRFTGAYKDNVFDDLYKTKEPLYFRVGGNTLLKGIEEAVKVMKVGDRWKLTIPGELAFGAKGRSASPGKPRIPPMAPVEYDLTLVALPGRETEVIDLDSFDENAPASDDSDPNKGLRF 229          
BLAST of NO02G00980 vs. NCBI_GenBank
Match: GAX11545.1 (peptidylprolyl isomerase [Fistulifera solaris])

HSP 1 Score: 157.5 bits (397), Expect = 4.800e-35
Identity = 77/155 (49.68%), Postives = 106/155 (68.39%), Query Frame = 0
Query:   52 RDAFLKTAGLLSLGLVAGSTGGLPFLPRAGAESLPSGITYEVVENGNGPVPKVGELAAIRFTGAYKGNVFDDLYKTKEPLYFRVGGNTLLKGIEEAVKVMKVGDRWKLTIPGELAFGAKGRSASPGKPRIPPMAAVEYDLTLVALPGRETEILDL 207
            R AF ++A   ++ +VA S+          AE+LP+G+TYEV + G+GP P++GELAAIRF      N  DD++ T EP Y R+G   LLKG+EE + +M++GDRW+LTIP ELAFG KGR AS GKPRI   A + +D+ +V LPGRE E+++L
Sbjct:   28 RQAFWQSAAAGAVAVVAASS-------PVQAETLPNGVTYEVKKKGDGPQPEIGELAAIRFAAYNGANKIDDIFDTPEPYYTRIGSGGLLKGVEETLPLMRLGDRWELTIPSELAFGKKGRPASAGKPRIAGDAVITFDVEMVGLPGREIELIEL 175          
BLAST of NO02G00980 vs. NCBI_GenBank
Match: GAX12950.1 (peptidylprolyl isomerase [Fistulifera solaris])

HSP 1 Score: 155.6 bits (392), Expect = 1.800e-34
Identity = 82/175 (46.86%), Postives = 114/175 (65.14%), Query Frame = 0
Query:   36 LARGLVALEA----EGGMSRRDAFLKTAGLLSLGLVAGSTGGLPFLPRAGAESLPSGITYEVVENGNGPVPKVGELAAIRFTGAYKGNVFDDLYKTKEPLYFRVGGNTLLKGIEEAVKVMKVGDRWKLTIPGELAFGAKGRSASPGKPRIPPMAAVEYDLTLVALPGRETEILDL 207
            LA  L A+ A    +  +  R AF ++A   ++ +VA S           AE+LP+G+TYEV + G+GP P++GELAAIRF      N  DD+++T EP Y R+G   LLKG+EE + +M++GDRW+LTIP ELAFG KGR AS GKPRI   A + +D+ +V LPGRE E+++L
Sbjct:    8 LATCLTAVSAWTTPQNSVVTRQAFWQSAA--AVAVVAASA-------PVQAETLPNGVTYEVKKKGDGPQPEIGELAAIRFAAYNGANKIDDIFETPEPYYTRIGSGGLLKGVEETLPLMRLGDRWELTIPSELAFGKKGRPASAGKPRIAGDAVITFDVEMVGLPGREIELIEL 173          
BLAST of NO02G00980 vs. NCBI_GenBank
Match: XP_009033352.1 (hypothetical protein AURANDRAFT_17047, partial [Aureococcus anophagefferens] >EGB12289.1 hypothetical protein AURANDRAFT_17047, partial [Aureococcus anophagefferens])

HSP 1 Score: 147.5 bits (371), Expect = 5.000e-32
Identity = 68/117 (58.12%), Postives = 89/117 (76.07%), Query Frame = 0
Query:   88 GITYEVVE-NGNGPVPKVGELAAIRFTGAYKGNVFDDLYKTKEPLYFRVGGNTLLKGIEEAVKVMKVGDRWKLTIPGELAFGAKGRSASPGKPRIPPMAAVEYDLTLVALPGRETEI 204
            G+ YEV++ N NG +PK+G+L AIRF G+ +G VFDD+ KT EPLY+RVGG +L+KGI+EAV +M  G+ W LTIPG+L FG KGRSAS GKPRIPP A + Y++  V  PG E ++
Sbjct:    1 GLKYEVIKSNPNGAIPKIGDLIAIRFKGSTEGRVFDDITKTDEPLYYRVGGGSLIKGIDEAVTLMHYGETWGLTIPGDLGFGPKGRSASAGKPRIPPNAELYYEVQFVGFPGFEGDL 117          
BLAST of NO02G00980 vs. NCBI_GenBank
Match: EJK47918.1 (hypothetical protein THAOC_33332 [Thalassiosira oceanica])

HSP 1 Score: 146.7 bits (369), Expect = 8.500e-32
Identity = 70/157 (44.59%), Postives = 99/157 (63.06%), Query Frame = 0
Query:   50 SRRDAFLKTAGLLSLGLVAGSTGGLPFLPRAGAESLPSGITYEVVENGNGPVPKVGELAAIRFTGAYKGNVFDDLYKTKEPLYFRVGGNTLLKGIEEAVKVMKVGDRWKLTIPGELAFGAKGRSASPGKPRIPPMAAVEYDLTLVALPGRETEILDL 207
            SR +        +   +V  + GG   +P    E LPSG++ +V ++GNGP P++GE+AAIRF      N  DD+++T EP Y R+G   L+KG+EE +  M VGDRW LT+PG LAFG  GR AS GKPRIP    + +D+ +V LPG+E E++D+
Sbjct:   34 SRTEFLRDVTATVGASVVVSTLGG---MPAYADEVLPSGVSIKVEKSGNGPAPEIGEMAAIRFRAFAGENKIDDIFETPEPYYTRIGSGGLIKGVEEVLPKMVVGDRWVLTVPGPLAFGPAGRKASAGKPRIPGNQEIIFDVEMVGLPGKEQELIDI 187          
BLAST of NO02G00980 vs. NCBI_GenBank
Match: XP_002290289.1 (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >EED92041.1 predicted protein, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 145.6 bits (366), Expect = 1.900e-31
Identity = 67/119 (56.30%), Postives = 86/119 (72.27%), Query Frame = 0
Query:   88 GITYEVVENGNGPVPKVGELAAIRFTGAYKGNVFDDLYKTKEPLYFRVGGNTLLKGIEEAVKVMKVGDRWKLTIPGELAFGAKGRSASPGKPRIPPMAAVEYDLTLVALPGRETEILDL 207
            G+  +VV++GNGP P +GELAAIRF      N  DD++ T EP Y RVG   L+KG+EE +  M+VGDRW LTIPGELAFG KGR AS GKPRIP  A + +D+ +V LPG+E E+++L
Sbjct:    1 GVAIKVVKSGNGPEPGIGELAAIRFQSFAGENKIDDIFDTPEPYYTRVGSGGLIKGVEEVLPKMRVGDRWVLTIPGELAFGPKGRPASAGKPRIPSNAVITFDVEMVGLPGKEPELIEL 119          
BLAST of NO02G00980 vs. NCBI_GenBank
Match: CEL93612.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 143.3 bits (360), Expect = 9.400e-31
Identity = 67/131 (51.15%), Postives = 92/131 (70.23%), Query Frame = 0
Query:   87 SGITYEVVENGNGPVPKVGELAAIRFTGAYKGNVFDDLYKTKEPLYFRVGGNTLLKGIEEAVKVMKVGDRWKLTIPGELAFGAKGRSASPGKPRIPPMAAVEYDLTLVALPGRETEILDLDNFDENAPASD 218
            SG+ Y V+++G GP  + G+L  IRF G YK  V DDL++T EP Y R  G  L+ G+EEA+ +M+VGDRWKL +PG LAFG +GRS +PG+PRIPP A +EY++ +V +PG+  + LDL   D + P SD
Sbjct:   32 SGLAYSVLKSGEGPKVEAGDLVVIRFRGQYKNIVIDDLFRTSEPYYARAAGGKLVAGLEEALLMMRVGDRWKLKVPGALAFGQQGRSPAPGRPRIPPNAPIEYEMLVVDIPGK-GDPLDLYFGDTDQPDSD 161          
BLAST of NO02G00980 vs. NCBI_GenBank
Match: XP_005766282.1 (hypothetical protein EMIHUDRAFT_48468, partial [Emiliania huxleyi CCMP1516] >EOD13853.1 hypothetical protein EMIHUDRAFT_48468, partial [Emiliania huxleyi CCMP1516])

HSP 1 Score: 142.5 bits (358), Expect = 1.600e-30
Identity = 68/121 (56.20%), Postives = 89/121 (73.55%), Query Frame = 0
Query:   88 GITYEVVENGNGPVPKVGELAAIRFTGAYK--GNVFDDLYKTKEPLYFRVGGNTLLKGIEEAVKVMKVGDRWKLTIPGELAFGAKGRSASPGKPRIPPMAAVEYDLTLVALPGRETEILDL 207
            G+TY V+++G G  P  G+L AIRF G  K  G VFDD+ ++ E  YFRVG  ++L G+EEAVK+M  GD W LTIPG+LAFG KGRSASPGKPRIP  A + + L LVA+PG++ E+L++
Sbjct:    1 GLTYNVIKSGKGGQPATGDLIAIRFKGTIKSSGQVFDDIMESAEAYYFRVGSGSVLPGVEEAVKLMHTGDVWDLTIPGKLAFGDKGRSASPGKPRIPSNAEIGFLLELVAVPGKDDELLEV 121          
BLAST of NO02G00980 vs. NCBI_GenBank
Match: CBJ30323.1 (putative FKBP-type peptidyl-prolyl cis-trans isomerase 2 [Ectocarpus siliculosus])

HSP 1 Score: 140.6 bits (353), Expect = 6.100e-30
Identity = 78/177 (44.07%), Postives = 105/177 (59.32%), Query Frame = 0
Query:   41 VALEAEGGMSR-RDAFLKTAGLLSLGLVAGSTGGLPFLPRAGAESLPSGITYEVVENGNGPVPKVGELAAIRFTGAYKGNVFDDLYKTKEPLYFRVGGNTLLKGIEEAVKVMKVGDRWKLTIPGELAFGAKGRSASPGKPRIPPMAAVEYDLTLVALPGRETEILDL---DNFDENA 214
            +AL  EGG  + R   L+T    +L   A  T     +    + +  SG+    +  G GPV + G+L  +RF G Y    FD+++ T EP Y R G  TL+KG+EEA+ +M+VGD+W+LT P  LAFG KGR  SPG+PRIPP A VEY L LVALPG+E +I++    D F  NA
Sbjct:   47 MALSPEGGQGQSRGELLQTVWKTALTAGAAQTLLASSVLAEDSLTTASGLKINKLVQGKGPVAEQGDLIGVRFKGNYGTYEFDNIFNTAEPYYMRAGVGTLVKGVEEALLMMRVGDKWQLTCPANLAFGNKGRPPSPGRPRIPPGADVEYTLELVALPGKEEDIVEQRTGDTFSGNA 223          
BLAST of NO02G00980 vs. NCBI_GenBank
Match: XP_005535436.1 (probable FKBP-type peptidyl-prolyl cis-trans isomerase [Cyanidioschyzon merolae strain 10D] >BAM79150.1 probable FKBP-type peptidyl-prolyl cis-trans isomerase [Cyanidioschyzon merolae strain 10D])

HSP 1 Score: 139.0 bits (349), Expect = 1.800e-29
Identity = 63/115 (54.78%), Postives = 80/115 (69.57%), Query Frame = 0
Query:   92 EVVENGNGPVPKVGELAAIRFTGAYKGNVFDDLYKTKEPLYFRVGGNTLLKGIEEAVKVMKVGDRWKLTIPGELAFGAKGRSASPGKPRIPPMAAVEYDLTLVALPGRETEILDL 207
            +V+E G GP P+ G+L  IRF  AY G VFDD+  + EP Y RVG   L+KG+EEAVK M VGD W+L +P   AFG+KGR  SPGKP IPP A V Y++ L  +PGRE E+L++
Sbjct:   90 QVLEKGTGPQPQTGDLVGIRFRAAYNGRVFDDIMDSSEPFYMRVGSGNLVKGVEEAVKRMHVGDLWRLELPPAYAFGSKGRKPSPGKPAIPPNATVVYEVRLDEVPGREQELLEV 204          
The following BLAST results are available for this feature:
BLAST of NO02G00980 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM30547.12.000e-8989.73putative fkbp-type peptidyl-prolyl cis-trans isome... [more]
GAX11545.14.800e-3549.68peptidylprolyl isomerase [Fistulifera solaris][more]
GAX12950.11.800e-3446.86peptidylprolyl isomerase [Fistulifera solaris][more]
XP_009033352.15.000e-3258.12hypothetical protein AURANDRAFT_17047, partial [Au... [more]
EJK47918.18.500e-3244.59hypothetical protein THAOC_33332 [Thalassiosira oc... [more]
XP_002290289.11.900e-3156.30predicted protein, partial [Thalassiosira pseudona... [more]
CEL93612.19.400e-3151.15unnamed protein product [Vitrella brassicaformis C... [more]
XP_005766282.11.600e-3056.20hypothetical protein EMIHUDRAFT_48468, partial [Em... [more]
CBJ30323.16.100e-3044.07putative FKBP-type peptidyl-prolyl cis-trans isome... [more]
XP_005535436.11.800e-2954.78probable FKBP-type peptidyl-prolyl cis-trans isome... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006701NSK006701Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G00980.1NO02G00980.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573754gene_675Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100033g36gene109Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G00980.1NO02G00980.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G00980 ID=NO02G00980|Name=NO02G00980|organism=Nannochloropsis oceanica|type=gene|length=684bp
ATGAAGGTAGTAGCTTCGTTGCTGGCCCTCGTGGTGCTGCCTTTGACATC
ATCCTTCTTTGTCGTACCTGCCCCTGCGTGCACACAGCAGCAGCAACAGC
AGCAGCTTGCGCGGGGTCTGGTGGCGCTGGAAGCGGAGGGGGGCATGTCC
AGAAGAGACGCCTTCCTGAAGACGGCGGGCCTGCTCTCTCTTGGCCTCGT
CGCAGGCAGCACTGGGGGGCTACCTTTCCTGCCACGGGCAGGGGCCGAGT
CCTTGCCAAGTGGGATTACTTATGAGGTGGTTGAGAATGGCAACGGTCCG
GTGCCCAAGGTGGGGGAGCTGGCCGCCATCCGCTTCACAGGCGCATACAA
GGGTAATGTGTTCGACGACCTGTACAAGACCAAGGAACCTCTCTACTTCC
GTGTGGGGGGCAACACCCTCCTGAAAGGCATCGAGGAGGCGGTCAAGGTC
ATGAAAGTTGGAGATCGTTGGAAGCTCACAATTCCGGGCGAGCTGGCATT
CGGTGCCAAGGGCCGGTCGGCCTCCCCGGGCAAGCCCCGTATTCCCCCTA
TGGCGGCAGTGGAGTACGATTTGACACTAGTGGCGCTGCCAGGCCGTGAG
ACGGAGATTTTGGATCTAGACAACTTTGATGAGAATGCGCCCGCGTCGGA
TGACTCGGACCCAAACAAGGGGTTGCGATTTTAG
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protein sequence of NO02G00980.1

>NO02G00980.1-protein ID=NO02G00980.1-protein|Name=NO02G00980.1|organism=Nannochloropsis oceanica|type=polypeptide|length=228bp
MKVVASLLALVVLPLTSSFFVVPAPACTQQQQQQQLARGLVALEAEGGMS
RRDAFLKTAGLLSLGLVAGSTGGLPFLPRAGAESLPSGITYEVVENGNGP
VPKVGELAAIRFTGAYKGNVFDDLYKTKEPLYFRVGGNTLLKGIEEAVKV
MKVGDRWKLTIPGELAFGAKGRSASPGKPRIPPMAAVEYDLTLVALPGRE
TEILDLDNFDENAPASDDSDPNKGLRF*
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Synonyms
Publications