NO02G00570, NO02G00570 (gene) Nannochloropsis oceanica

Overview
NameNO02G00570
Unique NameNO02G00570
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length703
Alignment locationchr2:195489..196191 +

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Properties
Property NameValue
DescriptiontRNA/rRNA methyltransferase (SpoU) family protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:195489..196191 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006396RNA processing
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0008173RNA methyltransferase activity
GO:0003723RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR029028Alpha/beta_knot_MTases
IPR001537SpoU_MeTrfase
Homology
BLAST of NO02G00570 vs. NCBI_GenBank
Match: EWM30614.1 (obp33pep like protein [Nannochloropsis gaditana])

HSP 1 Score: 241.5 bits (615), Expect = 2.300e-60
Identity = 129/191 (67.54%), Postives = 141/191 (73.82%), Query Frame = 0
Query:    6 PRLFLLLHHISKRQNVRTLLTSAAAFGAEVLVVGQPGFDELSHVPKRLATAFAAVEGEAEPPHPPTPLYRRFDGTLEECRDYLHAQNIQVWGIEIGETAVNVEEAPWDKG---XXXXXXXXXXXXXGNEGTGMSSRQARVCDGFMYISQYGQGTASLNVAVAGSIVMHRYSVWAAAKRQ----QERKIKEE 190
            PRL LLLHHISKRQNVRTLLTSAAAFGAEVLVVGQP F+E SHVP+RLA A    +GE      P PLYRRF GTLEECRD L  QN+Q+WG+EIGE AVNVEE PW                   GNEGTGMS+RQARVCDGF+YISQYGQGTASLNVAVAGSIVMHR+S WAA   Q    +ER + +E
Sbjct:   34 PRLLLLLHHISKRQNVRTLLTSAAAFGAEVLVVGQPSFNETSHVPRRLAEAL--TQGENASICQPQPLYRRFHGTLEECRDQLREQNVQIWGVEIGEAAVNVEEIPWATSASKWEKEGRGGIALLLGNEGTGMSARQARVCDGFVYISQYGQGTASLNVAVAGSIVMHRFSEWAADSCQGGAEEERHVNDE 222          
BLAST of NO02G00570 vs. NCBI_GenBank
Match: PKA55345.1 (21S rRNA (GM2251-2'-O)-methyltransferase [Apostasia shenzhenica])

HSP 1 Score: 113.2 bits (282), Expect = 9.400e-22
Identity = 69/176 (39.20%), Postives = 99/176 (56.25%), Query Frame = 0
Query:    3 PPSPRLFLLLHHISKRQNVRTLLTSAAAFG-AEVLVVGQPGFDELSHVPKRLATAFAAVEGEAEPPHPPTPLYRRFDGTLEECRDYLHAQ-NIQVWGIEIGETAVNVEEAPWDKGXXXXXXXXXXXXXGNEGTGMSSRQARVCDGFMYISQYGQGTASLNVAVAGSIVMHRYSVWA 177
            PP+    LL+H+++KR NV T++ SA AFG +E+++VG+  F+           AF +    A        L+R F  +L E R YL  Q N  + G+EI + A++V + P+ K              GNEGTG+S ++  +CD F+YI QYG GTASLNV VA SIV+H +  WA
Sbjct:   22 PPTLESILLVHNVAKRHNVGTMVRSATAFGVSEMILVGRRDFN-----------AFGSHGSTAH------LLFRHFH-SLSEARSYLKEQRNCDICGVEIADGALSVTQHPFKKS--------TAFLLGNEGTGLSPKECEICDFFVYIPQYGSGTASLNVTVAASIVLHHFGAWA 171          
BLAST of NO02G00570 vs. NCBI_GenBank
Match: CEM20198.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 111.7 bits (278), Expect = 2.700e-21
Identity = 75/199 (37.69%), Postives = 110/199 (55.28%), Query Frame = 0
Query:    2 SPPSPRLFLLLHHISKRQNVRTLLTSAAAFG-AEVLVVGQPGFDELSHVPKRLATAFAAVEGEAEPPHPPTPLYRRFDGTLEECRDYLHAQNIQVWGIEIGETAVNVEEAPWDKGXXXXXXXXXXXXXGNEGTGMSSRQARVCDGFMYISQYGQGTASLNVAVAGSIVMHRYSVWAAAKRQQERKIKEEMKEKGNEMEE 200
            S P  + FLLLH+I KR N  +LL SA+AFG +EVLVVG+          ++L T       +   PH    L  R+  TLE   ++LHA++I + G+EI + A+ V                     GNEGTGM+++Q ++CD F+Y  QYG GTASLNV VAGSIV+H +++WA  +       K ++    +++E+
Sbjct:   36 SQPQHQSFLLLHNIGKRSNWGSLLRSASAFGVSEVLVVGE----------RKLKT----FGNQGTLPH----LQFRYFNTLEAAVEWLHARDITLIGVEIVDEAIPVHH-------PQAFERSSCIMLGNEGTGMTAKQLQMCDRFVYTPQYGGGTASLNVTVAGSIVLHHFAIWAGFREGSRTGHKFDVAPVRSKLEQ 209          
BLAST of NO02G00570 vs. NCBI_GenBank
Match: OQR91181.1 (hypothetical protein ACHHYP_04915 [Achlya hypogyna])

HSP 1 Score: 110.9 bits (276), Expect = 4.700e-21
Identity = 79/190 (41.58%), Postives = 104/190 (54.74%), Query Frame = 0
Query:    2 SPP------SPR-LFLLLHHISKRQNVRTLLTSAAAFG-AEVLVVGQPGFDELSHVPKRLATAFAAVEGEAEPPHPPTPLYRRFDGTLEECRDYLHAQ--NIQVWGIEIGETAVNVEEAPWDKGXXXXXXXXXXXXXGNEGTGMSSRQARVCDGFMYISQYGQGTASLNVAVAGSIVMHRYSVWAAAKRQ 182
            SPP      SPR    ++++I KR+N+R LL SA AFG +EV VVGQ           +L +  AA+  E   P    P       TL+EC+  L A+  + +V GIEI  +A +V +                   GNEG+G+S  Q  +CDGF+YI QYG GTASLNV VA SI+MHRY+VWAA  R+
Sbjct:    3 SPPPAPAAASPRGQIWIINNIQKRKNIRDLLLSATAFGVSEVFVVGQ-----------KLLSFEAALHFEDSLPGFKLPYPITRCRTLDECKALLLARDPSTRVIGIEILHSAKSVNDP-----DVFVADAPMAFMVGNEGSGLSDAQVAICDGFVYIPQYGGGTASLNVTVAASIIMHRYAVWAATNRR 176          
BLAST of NO02G00570 vs. NCBI_GenBank
Match: XP_012211435.1 (hypothetical protein SPRG_16736 [Saprolegnia parasitica CBS 223.65] >KDO17854.1 hypothetical protein SPRG_16736 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 110.5 bits (275), Expect = 6.100e-21
Identity = 73/169 (43.20%), Postives = 93/169 (55.03%), Query Frame = 0
Query:   11 LLHHISKRQNVRTLLTSAAAFG-AEVLVVGQPGFDELSHVPKRLATAFAAVEGEAEPPHPPTPLYRRFDGTLEECRDYLHAQN--IQVWGIEIGETAVNVEEAPWDKGXXXXXXXXXXXXXGNEGTGMSSRQARVCDGFMYISQYGQGTASLNVAVAGSIVMHRYSVWA 177
            ++++I KR+N+R LL SAAAFG  EV VVG           K L+   A ++ E      P P+ R    TL ECR  L  QN   Q+ GIEI   A +V +                   GNEG+G+S  Q  +CDGF+YI QYG GTASLNV VA SI+MH+Y+VWA
Sbjct:   14 IINNIQKRKNIRDLLLSAAAFGVVEVYVVGH----------KLLSFDAALLQFEDSGFELPFPITR--CATLVECRSLLKTQNPSTQIVGIEILHNAKSVND------PDVFTEAPMAFMVGNEGSGLSDAQVAICDGFVYIPQYGGGTASLNVTVAASIIMHKYAVWA 164          
BLAST of NO02G00570 vs. NCBI_GenBank
Match: PNW83678.1 (hypothetical protein CHLRE_05g238950v5 [Chlamydomonas reinhardtii])

HSP 1 Score: 110.5 bits (275), Expect = 6.100e-21
Identity = 73/194 (37.63%), Postives = 100/194 (51.55%), Query Frame = 0
Query:    2 SPPSPRLFLLLHHISKRQNVRTLLTSAAAFGA-EVLVVGQPGFDELSHVPKRLATAFAAVEGEAEPPHPPTPLYRRFDGTLEECRDYL-HAQNIQVWGIEIGETAVNVEEAPWDKGXXXXXXXXXXXXXGNEGTGMSSRQARVCDGFMYISQYGQGTASLNVAVAGSIVMHRYSVWAAAKRQQERKIKEEMKEK 194
            S   P  +++ H +SKR N+ T++ SA AFG  EV +VG   F+           AF                 R FD TL +C  +L   +  +V G+EI E A+ V+E P+                GNEG GM+ RQ  +CDGF+YI Q+G GTASLNVAVA SIV+H +++WAA   +Q    K  + EK
Sbjct:   25 STSGPASYIITHSVSKRHNIGTIVRSATAFGVKEVCLVGSRQFNTFGSHGSDAHVAF-----------------RHFD-TLAKCVQHLKEVEGCRVLGVEICEGALPVQEHPF--------TGPTAFLLGNEGQGMTDRQMALCDGFVYIPQHGAGTASLNVAVAASIVLHHFAIWAAYPERQREGYKFVVAEK 192          
BLAST of NO02G00570 vs. NCBI_GenBank
Match: ETK72046.1 (hypothetical protein L915_20785 [Phytophthora parasitica] >ETL25474.1 hypothetical protein L916_20668 [Phytophthora parasitica] >ETL78687.1 hypothetical protein L917_20530 [Phytophthora parasitica] >ETM31953.1 hypothetical protein L914_20545 [Phytophthora parasitica] >ETP01487.1 hypothetical protein F441_21275 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 109.8 bits (273), Expect = 1.000e-20
Identity = 65/173 (37.57%), Postives = 97/173 (56.07%), Query Frame = 0
Query:    5 SPRLFLLLHHISKRQNVRTLLTSAAAFGA-EVLVVGQPGFDELSHVPKRLATAFAAVEGEAEPPHPPTPLYRRFDGTLEECRDYLHAQNIQVWGIEIGETAVNVEEAPWDKGXXXXXXXXXXXXXGNEGTGMSSRQARVCDGFMYISQYGQGTASLNVAVAGSIVMHRYSVWA 177
            +PR FL+L+++ K +N++ +L SA+AFG  EVLVVGQ  FD L      L++    V   A               TL++CR     ++I++ G+EI   A ++ + P+                GNEG+GM+S Q  +CD F+YI QYG GTASLNV VA SI++  +++WA
Sbjct:    8 TPRHFLILNNVQKNKNIKNMLVSASAFGVKEVLVVGQKKFD-LQEQEPFLSSLSCRVTRVA---------------TLKDCRALCQERSIRIVGVEIMHDAKSIADQPFS--------GDTAFIMGNEGSGMNSAQVAICDDFVYIPQYGGGTASLNVTVAASIILQSFALWA 156          
BLAST of NO02G00570 vs. NCBI_GenBank
Match: XP_008898277.1 (hypothetical protein PPTG_06140 [Phytophthora parasitica INRA-310] >ETI31676.1 hypothetical protein F443_21386 [Phytophthora parasitica P1569] >ETN15862.1 hypothetical protein PPTG_06140 [Phytophthora parasitica INRA-310] >ETP29639.1 hypothetical protein F442_21223 [Phytophthora parasitica P10297] >KUF80891.1 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Phytophthora nicotianae])

HSP 1 Score: 109.4 bits (272), Expect = 1.400e-20
Identity = 65/173 (37.57%), Postives = 96/173 (55.49%), Query Frame = 0
Query:    5 SPRLFLLLHHISKRQNVRTLLTSAAAFGA-EVLVVGQPGFDELSHVPKRLATAFAAVEGEAEPPHPPTPLYRRFDGTLEECRDYLHAQNIQVWGIEIGETAVNVEEAPWDKGXXXXXXXXXXXXXGNEGTGMSSRQARVCDGFMYISQYGQGTASLNVAVAGSIVMHRYSVWA 177
            +PR FL+L+++ K +N++ +L SA+AFG  EVLVVGQ  FD L      L++    V   A               TL++CR     + I++ G+EI   A ++ + P+                GNEG+GM+S Q  +CD F+YI QYG GTASLNV VA SI++  +++WA
Sbjct:    8 TPRHFLILNNVQKNKNIKNMLVSASAFGVKEVLVVGQKKFD-LQEQEPFLSSLSCRVTRVA---------------TLKDCRALCQERGIRIVGVEIMHDAKSIADQPFS--------GDTAFIMGNEGSGMNSAQVAICDDFVYIPQYGGGTASLNVTVAASIILQSFALWA 156          
BLAST of NO02G00570 vs. NCBI_GenBank
Match: ETO60379.1 (hypothetical protein F444_21404 [Phytophthora parasitica P1976])

HSP 1 Score: 109.4 bits (272), Expect = 1.400e-20
Identity = 65/173 (37.57%), Postives = 96/173 (55.49%), Query Frame = 0
Query:    5 SPRLFLLLHHISKRQNVRTLLTSAAAFGA-EVLVVGQPGFDELSHVPKRLATAFAAVEGEAEPPHPPTPLYRRFDGTLEECRDYLHAQNIQVWGIEIGETAVNVEEAPWDKGXXXXXXXXXXXXXGNEGTGMSSRQARVCDGFMYISQYGQGTASLNVAVAGSIVMHRYSVWA 177
            +PR FL+L+++ K +N++ +L SA+AFG  EVLVVGQ  FD L      L++    V   A               TL++CR     + I++ G+EI   A ++ + P+                GNEG+GM+S Q  +CD F+YI QYG GTASLNV VA SI++  +++WA
Sbjct:    8 TPRHFLILNNVQKNKNIKNMLVSASAFGVKEVLVVGQKKFD-LQEQEPFLSSLSCRVTRVA---------------TLKDCRALCQERGIRIVGVEIMHDAKSIADQPFS--------GDTAFIMGNEGSGMNSAQVAICDDFVYIPQYGGGTASLNVTVAASIILQSFALWA 156          
BLAST of NO02G00570 vs. NCBI_GenBank
Match: XP_002516828.1 (PREDICTED: uncharacterized tRNA/rRNA methyltransferase YsgA [Ricinus communis] >EEF45442.1 rRNA methylase, putative [Ricinus communis])

HSP 1 Score: 109.4 bits (272), Expect = 1.400e-20
Identity = 68/170 (40.00%), Postives = 95/170 (55.88%), Query Frame = 0
Query:    9 FLLLHHISKRQNVRTLLTSAAAFG-AEVLVVGQPGFDELSHVPKRLATAFAAVEGEAEPPHPPTPLYR-RFDGTLEECRDYLHAQNIQVWGIEIGETAVNVEEAPWDKGXXXXXXXXXXXXXGNEGTGMSSRQARVCDGFMYISQYGQGTASLNVAVAGSIVMHRYSVWA 177
            ++L+H+I+KR NV TL  SA AFG  E+++VG+  F+           AF +        H  T   R R   +L   RDYL  +   + G+EI + A+ V E P+ K              GNEGTG+S+++  +CD F+YI QYG+GTASLNV VA SIV+H + VWA
Sbjct:    6 YVLVHNIAKRHNVGTLARSATAFGVTELILVGRRDFN-----------AFGS--------HGSTSHLRFRHFHSLLNARDYLKEKECDICGVEITDGALPVNEHPFKKS--------TAFLLGNEGTGLSAKECEICDFFVYIPQYGRGTASLNVTVAASIVLHHFGVWA 148          
The following BLAST results are available for this feature:
BLAST of NO02G00570 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM30614.12.300e-6067.54obp33pep like protein [Nannochloropsis gaditana][more]
PKA55345.19.400e-2239.2021S rRNA (GM2251-2'-O)-methyltransferase [Apostasi... [more]
CEM20198.12.700e-2137.69unnamed protein product [Vitrella brassicaformis C... [more]
OQR91181.14.700e-2141.58hypothetical protein ACHHYP_04915 [Achlya hypogyna... [more]
XP_012211435.16.100e-2143.20hypothetical protein SPRG_16736 [Saprolegnia paras... [more]
PNW83678.16.100e-2137.63hypothetical protein CHLRE_05g238950v5 [Chlamydomo... [more]
ETK72046.11.000e-2037.57hypothetical protein L915_20785 [Phytophthora para... [more]
XP_008898277.11.400e-2037.57hypothetical protein PPTG_06140 [Phytophthora para... [more]
ETO60379.11.400e-2037.57hypothetical protein F444_21404 [Phytophthora para... [more]
XP_002516828.11.400e-2040.00PREDICTED: uncharacterized tRNA/rRNA methyltransfe... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006645NSK006645Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G00570.1NO02G00570.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|635963gene_631Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100129g13gene67Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G00570.1NO02G00570.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G00570 ID=NO02G00570|Name=NO02G00570|organism=Nannochloropsis oceanica|type=gene|length=703bp
ATGTCTCCACCATCGCCACGCCTCTTCCTTCTTCTACACCACATCTCCAA
GCGTCAGAATGTCCGTACACTCCTTACCTCCGCGGCTGCCTTTGGAGCCG
AGGTCCTGGTTGTAGGTCAGCCGGGCTTTGACGAACTCTCCCACGTCCCG
AAGCGACTCGCGACTGCCTTTGCTGCTGTGGAGGGAGAGGCAGAGCCACC
GCATCCTCCCACGCCTCTATATCGACGCTTTGACGGGACATTGGAGGAAT
GCCGTGATTACTTGCATGCTCAAAATATACAAGTTTGGGGAATAGAGATT
GGAGAGACGGCGGTAAATGTGGAGGAGGCCCCATGGGACAAAGGGGGCGG
AGGAGGAGGAGGAGGAGGAGTGGCGTTACTGCTCGGGAATGAGGGAACGG
GCATGTCTTCAAGGCAGGCAAGGGTTTGCGATGGATTCATGTATATAAGC
CAGTATGGCCAGgtacgtgtttacttttctccaatctccctcttgctttt
atctcacctctctccttcccttcctccttctctccctgctcctttcgcag
GGCACCGCGTCGTTAAATGTGGCAGTTGCAGGGAGCATCGTCATGCATCG
CTATAGCGTGTGGGCGGCCGCCAAACGACAACAAGAGAGAAAAATCAAAG
AGGAGATGAAGGAGAAGGGAAATGAGATGGAGGAGAGGAGATATAAACCA
TAG
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protein sequence of NO02G00570.1

>NO02G00570.1-protein ID=NO02G00570.1-protein|Name=NO02G00570.1|organism=Nannochloropsis oceanica|type=polypeptide|length=205bp
MSPPSPRLFLLLHHISKRQNVRTLLTSAAAFGAEVLVVGQPGFDELSHVP
KRLATAFAAVEGEAEPPHPPTPLYRRFDGTLEECRDYLHAQNIQVWGIEI
GETAVNVEEAPWDKGGGGGGGGGVALLLGNEGTGMSSRQARVCDGFMYIS
QYGQGTASLNVAVAGSIVMHRYSVWAAAKRQQERKIKEEMKEKGNEMEER
RYKP*
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Synonyms
Publications