NO02G00310, NO02G00310 (gene) Nannochloropsis oceanica

Overview
NameNO02G00310
Unique NameNO02G00310
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3760
Alignment locationchr2:109480..113239 -

Link to JBrowse

Properties
Property NameValue
DescriptionGlycosyltransferase AER61, uncharacterized
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:109480..113239 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0016757transferase activity, transferring glycosyl groups
GO:0016740transferase activity
Vocabulary: INTERPRO
TermDefinition
IPR007657Glycosyltransferase_AER61
Homology
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BLAST of NO02G00310 vs. NCBI_GenBank
Match: EWM30639.1 (Glycosyltransferase AER61, uncharacterized [Nannochloropsis gaditana])

HSP 1 Score: 266.5 bits (680), Expect = 1.800e-67
Identity = 133/187 (71.12%), Postives = 157/187 (83.96%), Query Frame = 0 
Query:  382 MSAFFRRQLLSSHEPPSLRHREMQQLLAEPSQQPYILLVDRASTRCLLDSNTSSFEEIMRVLREEGGLGNVETVRMEDISEEEQFQKVMHASVLIGVHGAALTNMVWQPPVLSTVIEIGFNPRKPDYSNLARVLGRAYRYLAADRVEEKVGPNPIAWKKVYIDSHKLLGVIKEVLAERMERQGWLCC 569
            M+AFFRRQ+L +    +  HR+ QQLL +PS QPYILLVDRA++R L D++T +FEEI RVLREEGGL N+E VRMEDI EE QF+KVM AS+LIGVHGAALTNMVWQPPV STVIEIGF PRKPDY N+ARV+GRAYRYLAA+ VEEK+  NPIAWK+VY+DS KLL V+++VL ER ER+ WLCC
Sbjct:    1 MAAFFRRQILGAGSANA--HRDTQQLL-QPSTQPYILLVDRAASRLLKDNSTRTFEEITRVLREEGGLTNLEAVRMEDIPEEGQFEKVMRASILIGVHGAALTNMVWQPPVDSTVIEIGFQPRKPDYPNMARVVGRAYRYLAAEGVEEKIDLNPIAWKRVYVDSRKLLAVVQDVLVERTERKEWLCC 184
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BLAST of NO02G00310 vs. NCBI_GenBank
Match: EWM30634.1 (hypothetical protein Naga_101554g1 [Nannochloropsis gaditana])

HSP 1 Score: 101.7 bits (252), Expect = 7.800e-18
Identity = 47/80 (58.75%), Postives = 62/80 (77.50%), Query Frame = 0 
Query:   49 SSLRRCLAVS---SSPCFYALFFLSVVAILLFSPLSYLPASIPPLNQGLSTFAGGCQPEDFVKVGRAVWVADPAFARRFG 126
            +SLRRCL+ S   +SPCF+ + F SVVA+ L+ P +YLP+++ PL Q LS+  GGC PEDF ++GRAVWVADPAFAR+ G
Sbjct:  108 ASLRRCLSASFSTTSPCFFVVLFFSVVAVFLWGPWTYLPSTLHPLGQALSSLTGGCHPEDFERLGRAVWVADPAFARKLG 187
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BLAST of NO02G00310 vs. NCBI_GenBank
Match: XP_002293062.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED89523.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 75.1 bits (183), Expect = 7.900e-10
Identity = 76/267 (28.46%), Postives = 122/267 (45.69%), Query Frame = 0 
Query:  315 GTYLMRRLGTMMWAE--DFGPHSSILFDDLWIRPRGRWLYPVHS-FFPEVHDLTKQLVTYGTHVDARWNQMSAF-FRRQLLSSHEPPSLRHRE----------MQQLLAEPSQQP--------YILLVDRASTRCLLDSNTSSFEEIMRVLREEGGLGNVETVRMEDISEEEQFQKVMHASVLIGVHGAALTNMVWQPP---VLSTVIEIGF----NPRKPDYSNLARVLGRAYRYLAADRVEEKVGPNPIAWKKVYIDSHKLLGVI 553
            GT + R L +   AE   F  +S+ +   L+++     LY VH  FF  V DL +     GT +   W    +F F    L+S  P  + + E          ++Q L   +  P        ++L+V R   R L+ S   SF E++  +   G    V+ +  ED+S E+Q Q    A+VL+  HGAAL++  W  P   ++  ++  GF    +  K DY+NLAR  G  Y Y   D +E     + I+ K + +D+ +L  V+
Sbjct:  168 GTAVARALASAHGAELLIFEQNSTFIEQQLYLK-----LYHVHGPFFGGVSDLLRA----GT-IGFNWPLWDSFKFEMHRLAS--PFGVMYSETVRRGNKIQLLKQQLDVTNSSPLSGVEDTGHVLIVQRRGDRRLVGSRNGSFVEVVDAICNLG--IPVKVIEFEDLSAEQQIQSAQSANVLVAAHGAALSHAAWMKPGGAIVEVLMRQGFVEFGDYHKADYANLARFFGLKYVYY--DPLELLPKEDLISSKLIVVDTDELARVV 418
The following BLAST results are available for this feature:
BLAST of NO02G00310 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
EWM30639.11.800e-6771.12Glycosyltransferase AER61, uncharacterized [Nannoc... [more]
EWM30634.17.800e-1858.75hypothetical protein Naga_101554g1 [Nannochloropsi... [more]
XP_002293062.17.900e-1028.46predicted protein [Thalassiosira pseudonana CCMP13... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR068ncniR068Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006606NSK006606Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G00310.1NO02G00310.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|610128gene_10191Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100568g5gene36Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G00310.1NO02G00310.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G00310 ID=NO02G00310|Name=NO02G00310|organism=Nannochloropsis oceanica|type=gene|length=3760bp
CAACAGGCACGAAAAGGAGGTGAGTAGATAAGTCACAGGTCAAGCTTCTG
CCGCCAAAAGGGCTCGAAGACGTCCACTCCTTGGTCTCCACTCCCCGATC
AACGCCAGCCTCCCCACCCCCGGCCTCCGCACATTGGCACACATGGCCTC
CTTTCCCTTTCGCCTGCCCGGTAGAAACGCAAGCAGTAGTAGCACGCGTT
ACGCTCCGCTCTCTACCACCAACTCCGCCTCGGCCTCGCACACGGCCGCA
CCCCACTTCTATCCTTTCCGCCCACGCTCTCTCTCCTCTTCCCTTCGACG
GTGCTTGGCTGTGTCGTCCTCCCCCTGTTTCTACGCCCTCTTCTTCCTCT
CTGTCGTTGCCATTCTGCTGTTTAGCCCACTGTCTTACCTGCCGGCAAGT
ATTCCACCATTAAATCAAGGACTCTCGACCTTCGCAGGAGGATGCCAGCC
Ggtaagaagggagagagggaggggggtggaatagaagagagagggaaagg
agcacaaaaaggaggcacatgaaggagaaacttcccttatgtcgcatgtg
acctatttccatgcttacaagcggtgtgcctgtgtacggggggccggggg
ggtaaggacgactgaacgactggcctcgatggaaatatcaacacaattac
aacatttctcttcttcctccgtaacttgctgttactgtctctctcgattt
aaccgtagGAGGACTTCGTCAAGGTGGGCCGTGCAGTCTGGGTGGCTGAT
CCGGCCTTCGCTCGAAGATTCGGgtgtgtagataagggaaaaggagggag
gaagggagggagggagggagggaagaaagagggaaaagggagggaggaag
cggtgtcgctttatggcgtttacatgaggtgaaattctctcaatgtctta
attgaatgtcctcattcactcacccactcgtcttatttctcgtcctctct
catccacttatcccctttcttgctctctctctttctccgtccctcccagG
TGTGACCCCTCGGTCTGCCATTGCCTGTTTGTGGAAGGCGGTAGTGGGGT
AGGGGGGGAAAGCTCCCGCCGCCTCTCCTCCTCCTTCTCCTCCTCCTCCT
CCCCCTTCCCTTTCTCAACTTCCTTCTCCTTCGCCGTCGAGAGTGAGAAC
AAGACTACCAGATCTGTAGAAATGAGAGCAGAAGGTGAAACAAGAATAAG
AAGCAGCAGCAGCGAGAGGACAAGGAGGAGGGCGGGGGAGGAGCAAGGAG
GGGGTTACATCCGTCACGTGTTCTTGAGCGCCTCCATCAAGCGAGTGCAT
TACTTCCACGAGGACAAGCCCCTGTGTTTGGTGCCGCATCGCCGGTACGA
TGACTTGGTCCAGgtagggagggagggagggcggaagggagggagaggtt
tctcggacgtcttctgccttcctcagtgtcgctcgcccctcggaaggcgc
acgctctctgactcctgcccttcccccttccctccctccctccctccctc
cctccctccctccctccctccctcagGTCCACGGCCTCGATCGTTCCCAG
ACAGTGCACGCCACGTGGGGGCCCTCTGTGTGGTATTCCAACGACCTGGT
CAACCCCTATCACATGATCCACTTCCGGgtagggagggggggaaggaagt
tgggagcgagggagtgagggagggaagggggaagggcaggagtctgtcgt
catcaagagagccgtcgcattgtggaacacgtcggtcagggtcataaccc
tgtccccgccctccctcccttccgtcttaccccacctatctagGTCCTCC
CTATCTTTGCCTGGATGGTACGGCAGGGGCTCGAGGCCGGCGAGCACATT
ACCTTTTTCGAACCGAAACCCAAGGATCAGgtggggcaggagggcaggag
ggcaggagggggcactacagtggatcagtcaggaaggaaaaagcgaagga
ggacgacaagtcagctattcggtgaaagaggaaagatggaaaactagtcc
gttattttactcacgtcggtactgttttgataaatttacacagCTACCCG
GAGGATATGGGACGTATTTGATGCGTCGCCTGGGCACGATGATGTGGGCG
GAAGACTTTGGACCGCACAGgtaggaaggggggggggaagggagggaagc
gggggggggacaaaggaagcagaggcgtagattgtcaaatagaggggagg
tggctccaccccgtccctccctccctccctccctccctccctccctccct
ccctccctagCTCCATTCTGTTCGACGACCTCTGGATCCGTCCCAGGGGC
CGGTGGCTCTACCCCGTCCACTCGTTCTTCCCTGAAGTGCACGATCTGAC
CAAGCAGCTGGTCACGTACGGCACGCACGTCGATGCCAGgtaaggaggga
ctgagggggagggggagggagggaaagacggtagagggaaggaaagcgaa
acaatgctttcttcattctcaactagcacggagggatcagctcaaaccta
acacagcaacatgacaaggtccaccgcatcaacactcatatggtacgacc
cccaaatgccatacaccaaatgccatagGTGGAACCAAATGTCGGCCTTC
TTCCGCCGCCAGCTCCTGTCGTCCCATGAACCACCGTCACTGAGGCACCG
AGAGATGCAACAGCTCTTGGCTGAGgtgggttgagcgctttggggcgcgg
ggggggttgaatgatatggtggttttgcacacacaaatgggggggggaac
acgcacacacacacgcacacacagagaagcatccaactcctcccatccct
ccctatcttcccacccttcctttctctagCCCTCGCAGCAGCCCTACATT
CTCCTGGTAGACCGAGCCTCCACCCGCTGCTTGCTGGACAGCAACACCAG
CAGCTTTGAGGAGATTATGCGGGTTTTACGAGAGGAAGGGGGGCTGGGGA
ATGTAGAAACAGTGCGGATGGAGGATATTTCGGAGgtgggaagggaaggg
aaaaaggagggagggaaggagggagggagggagggaaagacgacggttac
tcatgcccccttcgacttcaacctgcgcaagatgacttctcatccacctc
ccttccctcccccgcccccgtagGAGGAGCAATTCCAGAAGGTGATGCAC
GCCTCTGTCTTGATCGGTGTGCATGGTGCTGCCCTGACCAACATGGTCTG
GCAGCCCCCGGTCCTCTCCACAGTCATTGAAATTGGCTTCAACCCGCGCA
AGgtacgtctgtgcaagaaagaagaaacggcccacagcttaagtgggcgc
cttggtagaaggtcggcagatttttcagacggtgtttcccttttcctcct
tccctctctctcttcctccctccctccctcgtggcattgtctcgcagCCT
GACTACTCCAATTTGGCGCGTGTCCTCGGACGGGCCTATCGGTACCTTGC
TGCTGACCGTGTGGAGGAAAAAGTCGGCCCCAACCCCATCGCGTGGAAGA
AGGTGTATATCGATTCACACAAGCTTTTGGGTGTCATTAAGGAGGTCCTC
GCCGAGCGGATGGAACGGCAGGGGTGGTTATGTTGTTGAGACGGGCGAGC
GCGACTGTAAAATGAACAGATGACAGAGGAGTCATCCATGTTTGCAGACT
TATGTATAGGAAAATGATGCAAGTTGGAAGGGAGACGCAATCTAAAACAA
GCGAGACCCACTAAAGACATGAAAGAACCAAAAGAAGAAAGCGCCCTCAT
GGACTTGGGG
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protein sequence of NO02G00310.1

>NO02G00310.1-protein ID=NO02G00310.1-protein|Name=NO02G00310.1|organism=Nannochloropsis oceanica|type=polypeptide|length=569bp
MASFPFRLPGRNASSSSTRYAPLSTTNSASASHTAAPHFYPFRPRSLSSS
LRRCLAVSSSPCFYALFFLSVVAILLFSPLSYLPASIPPLNQGLSTFAGG
CQPEDFVKVGRAVWVADPAFARRFGCDPSVCHCLFVEGGSGVGGESSRRL
SSSFSSSSSPFPFSTSFSFAVESENKTTRSVEMRAEGETRIRSSSSERTR
RRAGEEQGGGYIRHVFLSASIKRVHYFHEDKPLCLVPHRRYDDLVQVHGL
DRSQTVHATWGPSVWYSNDLVNPYHMIHFRVLPIFAWMVRQGLEAGEHIT
FFEPKPKDQLPGGYGTYLMRRLGTMMWAEDFGPHSSILFDDLWIRPRGRW
LYPVHSFFPEVHDLTKQLVTYGTHVDARWNQMSAFFRRQLLSSHEPPSLR
HREMQQLLAEPSQQPYILLVDRASTRCLLDSNTSSFEEIMRVLREEGGLG
NVETVRMEDISEEEQFQKVMHASVLIGVHGAALTNMVWQPPVLSTVIEIG
FNPRKPDYSNLARVLGRAYRYLAADRVEEKVGPNPIAWKKVYIDSHKLLG
VIKEVLAERMERQGWLCC*
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Synonyms
Publications