NO01G04950, NO01G04950 (gene) Nannochloropsis oceanica

Overview
NameNO01G04950
Unique NameNO01G04950
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length4041
Alignment locationchr1:1311957..1315997 +

Link to JBrowse

Properties
Property NameValue
DescriptionIsovaleryl-dehydrogenase
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1311957..1315997 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0050660flavin adenine dinucleotide binding
GO:0016627oxidoreductase activity, acting on the CH-CH group of donors
GO:0003824catalytic activity
GO:0000166nucleotide binding
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO:0008152metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR009100AcylCoA_DH/oxidase_NM_dom
IPR036250AcylCo_DH-like_C
IPR006091Acyl-CoA_Oxase/DH_cen-dom
IPR009075AcylCo_DH/oxidase_C
IPR013786AcylCoA_DH/ox_N
Homology
BLAST of NO01G04950 vs. NCBI_GenBank
Match: EWM29425.1 (isovaleryl- dehydrogenase [Nannochloropsis gaditana])

HSP 1 Score: 627.5 bits (1617), Expect = 3.400e-176
Identity = 318/413 (77.00%), Postives = 340/413 (82.32%), Query Frame = 0
Query:   63 PLRPFSSEPAGSSSYSTMTAFDPFNPTEEHSQLRGMIRAFVEKEVDPQALAFNRREEFNLTLFRKLGELGLLGLTVSVEYGGSGMDAAAVAIVHEEISAADPAFCLAYLAHSLLFVNNLAQNGTSAQKLKYLPKACSGEVVGGMCMSEPGAGTDVLGMNTTAVKSQDGSFYTLNGAKMWITNGTLDGETTGDVYLVYARTGKGPKDLSMFVVEKGTEGFGLGQKLEDKLGMRASMTAELVFDECRVPVENLVGKEHGAAICMMRNLEIERVGLAAMSVGLARRCVEVMNRYAKERKAFGQSLNEFGQVQKHVAESYAEYMAGRTYLYFVANHLDLASSGNGLDADGVKLYCAKMGKEVADRAIQVLGGYGYVGEYQVERLWRDAKLLEIGGGTSEAHHKNMVRDLKRHHERLL 476
            P R FSSEP  S         DPFNPTEEH+ LR  +RAFVEKEVDPQAL FNRREEFNL LFRKLGELGLLGL+V  EYGGSGMDA AVAI HEE+SAADPAFCLAYLAHSLLFVNNLAQNG+ AQK KYLP AC+G  VGGMCMSEPGAGTDVLGM T A K+ DGS Y LNGAKMWITNGT+DG++TGDVYLVYA+TG+  KD+SMF+VEKG+ GF LGQKLEDKLGMRASMTAELVFD+CRVP+ENLVGKE GAA CMMRNLEIERVGLAAM                                Q+HVAESYAEYMAGR YLY+VAN LDL+SSGNGLDADGVKLYCAKMGKEVADRAIQVLGGYGYVGEYQVERLWRDAKLLEIGGGT+EAHHKNMVRDLK+HHERLL
Sbjct:   59 PRRRFSSEPVPSPP----VQIDPFNPTEEHTHLRTTVRAFVEKEVDPQALVFNRREEFNLPLFRKLGELGLLGLSVPAEYGGSGMDATAVAIAHEELSAADPAFCLAYLAHSLLFVNNLAQNGSHAQKSKYLPAACAGTAVGGMCMSEPGAGTDVLGMGTAATKASDGSHYILNGAKMWITNGTVDGKSTGDVYLVYAKTGQAAKDVSMFLVEKGSPGFRLGQKLEDKLGMRASMTAELVFDDCRVPLENLVGKEDGAAACMMRNLEIERVGLAAMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQRHVAESYAEYMAGRAYLYYVANQLDLSSSGNGLDADGVKLYCAKMGKEVADRAIQVLGGYGYVGEYQVERLWRDAKLLEIGGGTNEAHHKNMVRDLKKHHERLL 467          
BLAST of NO01G04950 vs. NCBI_GenBank
Match: CBJ27257.1 (isovaleryl-CoA dehydrogenase [Ectocarpus siliculosus])

HSP 1 Score: 582.8 bits (1501), Expect = 9.700e-163
Identity = 284/399 (71.18%), Postives = 328/399 (82.21%), Query Frame = 0
Query:   72 AGSSSYSTMTAFDPFNPTEEHSQLRGMIRAFVEKEVDPQALAFNRREEFNLTLFRKLGELGLLGLTVSVEYGGSGMDAAAVAIVHEEISAADPAFCLAYLAHSLLFVNNLAQNGTSAQKLKYLPKACSGEVVGGMCMSEPGAGTDVLGMNTTAVKSQDGSFYTLNGAKMWITNGTLDGETTGDVYLVYARTGKGPKDLSMFVVEKGTEGFGLGQKLEDKLGMRASMTAELVFDECRVPVENLVGKEHGAAICMMRNLEIERVGLAAMSVGLARRCVEVMNRYAKERKAFGQSLNEFGQVQKHVAESYAEYMAGRTYLYFVANHLDLASSGNGLDADGVKLYCAKMGKEVADRAIQVLGGYGYVGEYQVERLWRDAKLLEIGGGTSEAHHKNMVRDLKRH 471
            AG+   ST  A D FNPTEEH QLR M+R+FVE EVDPQAL +NR E+FN   F++LGELGLLG+TV+ +YGGSGMDA+A  IVHEE+SAADPA CL+YLAHS+LFVNNL QNG+  Q+ ++LP AC G  + GMCMSEPGAGTDVLGM T AV S DG  + ++GAKMWITNGT DG TTGDV+LVYARTG G +D+SMF+VEKG  GF LGQK+E K GMRASMTAELVFD   V  E+LVG E+GA +CMMRNLEIERV LAAM VG+ARRC+E MN Y KERKAFG  +N FGQ+QKH+A+SYAEYMAG+ YLY VA +LDL+S+GNGLDADG KLYC  M K VADRA+QVLGGYGY  EYQ+ERLWRDAKLLEIGGGT EAHHKNMVRDL ++
Sbjct:   38 AGARRRSTTGASDFFNPTEEHQQLREMVRSFVENEVDPQALQYNREEKFNAEAFKRLGELGLLGVTVAPQYGGSGMDASAACIVHEELSAADPALCLSYLAHSMLFVNNLEQNGSDEQRSRFLPSACEGSTIAGMCMSEPGAGTDVLGMTTKAVPSPDGLSFKIDGAKMWITNGTTDGLTTGDVFLVYARTGPGRQDISMFIVEKGMPGFELGQKIEGKCGMRASMTAELVFDGVEVGRESLVGDENGAMLCMMRNLEIERVTLAAMGVGIARRCIEAMNTYGKERKAFGSPINSFGQIQKHIADSYAEYMAGKHYLYAVAANLDLSSTGNGLDADGTKLYCTTMAKNVADRAMQVLGGYGYCDEYQIERLWRDAKLLEIGGGTLEAHHKNMVRDLAKN 436          
BLAST of NO01G04950 vs. NCBI_GenBank
Match: OLP79354.1 (Isovaleryl-CoA dehydrogenase, mitochondrial [Symbiodinium microadriaticum])

HSP 1 Score: 582.4 bits (1500), Expect = 1.300e-162
Identity = 290/415 (69.88%), Postives = 333/415 (80.24%), Query Frame = 0
Query:   62 QPLRPFSSEPAGSSSYSTMTAFDP-------FNPTEEHSQLRGMIRAFVEKEVDPQALAFNRREEFNLTLFRKLGELGLLGLTVSVEYGGSGMDAAAVAIVHEEISAADPAFCLAYLAHSLLFVNNLAQNGTSAQKLKYLPKACSGEVVGGMCMSEPGAGTDVLGMNTTAVKSQDGSFYTLNGAKMWITNGTLDGETTGDVYLVYARTGKGPKDLSMFVVEKGTEGFGLGQKLEDKLGMRASMTAELVFDECRVPVENLVGKEHGAAICMMRNLEIERVGLAAMSVGLARRCVEVMNRYAKERKAFGQSLNEFGQVQKHVAESYAEYMAGRTYLYFVANHLDLASSGNGLDADGVKLYCAKMGKEVADRAIQVLGGYGYVGEYQVERLWRDAKLLEIGGGTSEAHHKNMVRDLKR 470
            Q   P  S PA +S+  T     P       F+P+EEH  LR M+R+F E EV+PQA+ FNR E+ NL LFRKLGELGLLG+TV  EYGGSGMDA A  IVHEE++A DPAFCLAYLAHS+LFVNNLAQNG  AQK K+LP A  G  V GMCMSEP  GTDVLGM TTA  +++G  Y +NGAKMWITNGT+DG+ TGD YLVYARTG   +D+S+F+VEKGT+GF LGQK++DK GMRASMTAELVF +CR+P  NLVG+E  AA+CMMRNLEIERV LA+MS+G+ARRCVE MNRYAK+RKAFG  LN FGQ+Q+ +AESYAEY AGR+Y+Y  A HL+L S GNGLDADGVKLYC  MGK VADRAIQVLGGYGYVGEY VERLWRDAKLLEIGGGT+EAHHKN+VRDL R
Sbjct:   37 QASSPSFSMPAAASAEPTSQVPAPVEDPGTIFSPSEEHQALREMVRSFAEAEVEPQAIDFNREEKMNLPLFRKLGELGLLGVTVPEEYGGSGMDATAAVIVHEELAAVDPAFCLAYLAHSMLFVNNLAQNGNEAQKQKWLPSAVDGSKVCGMCMSEPAVGTDVLGMKTTA--TREGDEYVINGAKMWITNGTVDGKETGDAYLVYARTGSTSRDISLFLVEKGTKGFSLGQKIQDKCGMRASMTAELVFQDCRIPASNLVGQEGKAALCMMRNLEIERVALASMSLGIARRCVEEMNRYAKDRKAFGSQLNSFGQIQRFIAESYAEYQAGRSYVYQTAKHLNLESVGNGLDADGVKLYCGHMGKMVADRAIQVLGGYGYVGEYNVERLWRDAKLLEIGGGTNEAHHKNIVRDLSR 449          
BLAST of NO01G04950 vs. NCBI_GenBank
Match: PKN57635.1 (isovaleryl-CoA dehydrogenase [Deltaproteobacteria bacterium HGW-Deltaproteobacteria-14])

HSP 1 Score: 540.0 bits (1390), Expect = 7.200e-150
Identity = 270/386 (69.95%), Postives = 308/386 (79.79%), Query Frame = 0
Query:   84 DPFNPTEEHSQLRGMIRAFVEKEVDPQALAFNRREEFNLTLFRKLGELGLLGLTVSVEYGGSGMDAAAVAIVHEEISAADPAFCLAYLAHSLLFVNNLAQNGTSAQKLKYLPKACSGEVVGGMCMSEPGAGTDVLGMNTTAVKSQDGSFYTLNGAKMWITNGTLDGETTGDVYLVYARTGKGPKDLSMFVVEKGTEGFGLGQKLEDKLGMRASMTAELVFDECRVPVENLVGKEHGAAICMMRNLEIERVGLAAMSVGLARRCVEVMNRYAKERKAFGQSLNEFGQVQKHVAESYAEYMAGRTYLYFVANHLDLASSGNGLDADGVKLYCAKMGKEVADRAIQVLGGYGYVGEYQVERLWRDAKLLEIGGGTSEAHHKNMVRDLKR 470
            D FNPTEEH  LR M+RAF E+EVDPQA   ++ E FNL LFRKLGELGLLG+TV   +GG+GMDA A  I HEE+SAADP FCLAYLAHS+LF NNLA NG  AQ+ + LP ACSGE++GGM MSEPGAGTDVLGM T AV   DG  + L+GAKMWITNG L+    GD +LVYART  G + LS+F+VEKG  GF LGQK+ DKLGMRAS TAELVFD CRVP  NLVG E  A   MMRNLE+ER+ LAAMS+G+ARR +EVMNR+A ER+AFGQ + EFGQ+Q+H+AESYAEYMAGR+Y+Y VA  L L S GN +D+DGVKLYC  M K VADRAIQVLGGYGYVGEYQVERLWRDAKL+EIGGGT EAHHKN+ RDL R
Sbjct:    3 DLFNPTEEHLALRDMVRAFAEREVDPQAAEHDKHERFNLPLFRKLGELGLLGVTVEERWGGAGMDAVAAVIAHEELSAADPGFCLAYLAHSMLFANNLAHNGDDAQRGRLLPLACSGEILGGMAMSEPGAGTDVLGMQTRAV--ADGDDWVLDGAKMWITNGALNDAELGDAFLVYARTAPGSRGLSLFLVEKGMPGFRLGQKIHDKLGMRASTTAELVFDGCRVPGRNLVGAEGQAVKHMMRNLELERLTLAAMSLGMARRSIEVMNRHASERQAFGQPIREFGQIQRHIAESYAEYMAGRSYVYQVAAALSLKSGGNRVDSDGVKLYCGTMAKNVADRAIQVLGGYGYVGEYQVERLWRDAKLIEIGGGTVEAHHKNITRDLGR 386          
BLAST of NO01G04950 vs. NCBI_GenBank
Match: OEU18177.1 (acyl CoA dehydrogenase [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 534.6 bits (1376), Expect = 3.000e-148
Identity = 259/387 (66.93%), Postives = 314/387 (81.14%), Query Frame = 0
Query:   84 DPFNPTEEHSQLRGMIRAFVEKEVDPQALAFNRREEFNLTLFRKLGELGLLGLTVSVEYGGSGMDAAAVAIVHEEISAADPAFCLAYLAHSLLFVNNLAQNGTSAQKLKYLPKACSGEVVGGMCMSEPGAGTDVLGMNTTAVKSQDGSFYTLNGAKMWITNGTLD-GETTGDVYLVYARTGKGPKDLSMFVVEKGTEGFGLGQKLEDKLGMRASMTAELVFDECRVPVENLVGKEHGAAICMMRNLEIERVGLAAMSVGLARRCVEVMNRYAKERKAFGQSLNEFGQVQKHVAESYAEYMAGRTYLYFVANHLDLASSGNGLDADGVKLYCAKMGKEVADRAIQVLGGYGYVGEYQVERLWRDAKLLEIGGGTSEAHHKNMVRDLKR 470
            D FNPT+ H QLR M+R FV+ EV+PQAL +NR E+FNL L ++LG+LGLLGLTV  EYGG G+DA A A+VHEE+S +DPAFCL+YLAHSLL VNN++ NG+S QK ++LP A SGE +GGM MSEP  GTDVLGM T AV  +    + L G KMWITNGTLD G+T GD++LVYARTG G  D++ F+VEK   GF +GQK+ DKLGMRAS T+ELVFD+  +P EN++G  +GA +CMMRNLEIER+GLAAM++G+ARRC+ VM  YA ERKAFG+ L EFGQ+Q  +A SYAEYMAGR Y+Y  AN+L+L S GNGLDADG KLYCA+M K +ADR+IQVLGGYGYVGEY VERLWRD+KLLEIGGGT+E+HHKNMVRDL+R
Sbjct:   67 DFFNPTDTHVQLRSMLRHFVQNEVEPQALEYNRSEKFNLPLLKQLGDLGLLGLTVEEEYGGYGLDATATALVHEELSYSDPAFCLSYLAHSLLLVNNISINGSSEQKQRFLPTAISGEKIGGMGMSEPNCGTDVLGMTTKAVLDESTKLWHLTGQKMWITNGTLDGGKTPGDLFLVYARTGPGRSDITSFIVEKDMVGFSVGQKINDKLGMRASPTSELVFDDVPIPSENIIGDVNGATLCMMRNLEIERLGLAAMALGIARRCINVMKDYANERKAFGKPLTEFGQIQSAIATSYAEYMAGRCYVYAFANNLNLHSHGNGLDADGTKLYCAQMAKTIADRSIQVLGGYGYVGEYGVERLWRDSKLLEIGGGTNESHHKNMVRDLRR 453          
BLAST of NO01G04950 vs. NCBI_GenBank
Match: XP_002182225.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC46126.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 533.5 bits (1373), Expect = 6.700e-148
Identity = 263/391 (67.26%), Postives = 315/391 (80.56%), Query Frame = 0
Query:   86 FNPTEEHSQLRGMIRAFVEKEVDPQALAFNRREEFNLTLFRKLGE------LGLLGLTVSVEYGGSGMDAAAVAIVHEEISAADPAFCLAYLAHSLLFVNNLAQNGTSAQKLKYLPKACSGEVVGGMCMSEPGAGTDVLGMNTTAVKSQDGSFYTLNGAKMWITNGTLDGETTGDVYLVYARTGKGPKDLSMFVVEKGTEGFGLGQKLEDKLGMRASMTAELVFDECRVPVENLVGKEHGAAICMMRNLEIERVGLAAMSVGLARRCVEVMNRYAKERKAFG-QSLNEFGQVQKHVAESYAEYMAGRTYLYFVANHLDLASSGNGLDADGVKLYCAKMGKEVADRAIQVLGGYGYVGEYQVERLWRDAKLLEIGGGTSEAHHKNMVRDLKR 470
            FNPT+EH  +R  +R FVE+EV+PQA  +N+ E FN  LFRKLG       LG+LGLTV  EYGG G+DA AVA+ HEE+S +DPAFCLAYLAH+LL  NNLA NG+ AQK ++LP  C+G VVGGMCMSEP AGTDVLGM T A   + G  + LNG KMWITNGTLDG TTGD++LVYARTG    DL+ FVVEK   GF LGQK+ DKLGMRASMTAELVF++  +  +++VG+ + A +CMMRNLEIER+GLAAM++G+ARR ++ M RYA ER+AFG ++L EFGQ+Q+ +AESYAEYMAGR Y+Y VAN LDL  +GNGLDADG KLYCAKM KEVADRAIQV+GGYGYVGEY+VERLWRDAKLLEIGGGT+E+HHKNM RDL++
Sbjct:   40 FNPTDEHLAMRATLRTFVEREVEPQAAHYNKTETFNRDLFRKLGTVDQDHGLGVLGLTVPEEYGGLGLDATAVALTHEELSYSDPAFCLAYLAHALLLANNLAVNGSEAQKSRWLPDICAGTVVGGMCMSEPNAGTDVLGMKTNATAIEGGGGWKLNGTKMWITNGTLDGRTTGDIFLVYARTGPAKTDLTQFVVEKNMPGFSLGQKIVDKLGMRASMTAELVFEDVILSHDHVVGEVNEATLCMMRNLEIERIGLAAMALGIARRSIDEMKRYALERQAFGARNLFEFGQIQRLIAESYAEYMAGRCYVYGVANSLDLNKAGNGLDADGTKLYCAKMSKEVADRAIQVMGGYGYVGEYKVERLWRDAKLLEIGGGTNESHHKNMARDLRK 430          
BLAST of NO01G04950 vs. NCBI_GenBank
Match: XP_002907203.1 (isovaleryl-CoA dehydrogenase, putative [Phytophthora infestans T30-4] >EEY63767.1 isovaleryl-CoA dehydrogenase, putative [Phytophthora infestans T30-4])

HSP 1 Score: 533.5 bits (1373), Expect = 6.700e-148
Identity = 270/415 (65.06%), Postives = 320/415 (77.11%), Query Frame = 0
Query:   60 LFQPLRPF-SSEPAGSSSYSTMTAFDPFNPTEEHSQLRGMIRAFVEKEVDPQALAFNRREEFNLTLFRKLGELGLLGLTVSVEYGGSGMDAAAVAIVHEEISAADPAFCLAYLAHSLLFVNNLAQNGTSAQKLKYLPKACSGEVVGGMCMSEPGAGTDVLGMNTTAVKSQDGSFYTLNGAKMWITNGTLDGETTGDVYLVYART---GKGPKDLSMFVVEKGTEGFGLGQKLEDKLGMRASMTAELVFDECRVPVENLVGKEHGAAICMMRNLEIERVGLAAMSVGLARRCVEVMNRYAKERKAFGQSLNEFGQVQKHVAESYAEYMAGRTYLYFVANHLDLASSGNGLDADGVKLYCAKMGKEVADRAIQVLGGYGYVGEYQVERLWRDAKLLEIGGGTSEAHHKNMVRDLKRH 471
            LF   R F ++E + + S S+    D F PTEEH  LR M+  FV+ +VDPQAL  +R E+FN+ LFR+LG+LGLLG+T   +YGGS MDA A  I HEE+S++DPAFCL++LAHS+LFVNN+A+N + AQ  KYLP ACSG  + GM MSEP  GTDVLGM TTA KS  G FY LNG KMWITNG LD    GD +LVYART   GK  +D S F+VEKG EGF LGQ+++DK GMRAS TAELVF+ C+VPVEN+VG E  A +CMMRNLEIERV LAAMS+G+ARR +EVM+ YAKER+AFGQ LN FGQ+QK++AESYAEYMAGR Y+Y  A  L L S GN +D DGVKLYC  M K VADRAIQ LGGYGYVGEY VERLWRD+KLLEIGGGT+E+HHKNMV+DL R+
Sbjct:    9 LFAARRSFTAAECSLARSMSSSRDLDLFTPTEEHGVLREMLTGFVKTKVDPQALEHDREEKFNVKLFRELGDLGLLGITAPEKYGGSEMDALAAVIAHEELSSSDPAFCLSFLAHSMLFVNNVARNASDAQCQKYLPDACSGAKICGMAMSEPSVGTDVLGMRTTAKKSDCGKFYLLNGTKMWITNGALDDTELGDTFLVYARTGNSGKAKQDFSSFLVEKGFEGFSLGQRIKDKCGMRASNTAELVFENCKVPVENIVGTEGSAVLCMMRNLEIERVTLAAMSLGIARRSLEVMSNYAKEREAFGQPLNNFGQIQKNIAESYAEYMAGRAYVYNTARKLKLDSVGNRVDTDGVKLYCGDMAKRVADRAIQTLGGYGYVGEYNVERLWRDSKLLEIGGGTNESHHKNMVQDLVRN 423          
BLAST of NO01G04950 vs. NCBI_GenBank
Match: XP_009517540.1 (hypothetical protein PHYSODRAFT_553331 [Phytophthora sojae] >EGZ30265.1 hypothetical protein PHYSODRAFT_553331 [Phytophthora sojae])

HSP 1 Score: 530.4 bits (1365), Expect = 5.700e-147
Identity = 263/406 (64.78%), Postives = 318/406 (78.33%), Query Frame = 0
Query:   68 SSEPAGSSSYSTMTAFDPFNPTEEHSQLRGMIRAFVEKEVDPQALAFNRREEFNLTLFRKLGELGLLGLTVSVEYGGSGMDAAAVAIVHEEISAADPAFCLAYLAHSLLFVNNLAQNGTSAQKLKYLPKACSGEVVGGMCMSEPGAGTDVLGMNTTAVKSQDGSFYTLNGAKMWITNGTLDGETTGDVYLVYAR---TGKGPKDLSMFVVEKGTEGFGLGQKLEDKLGMRASMTAELVFDECRVPVENLVGKEHGAAICMMRNLEIERVGLAAMSVGLARRCVEVMNRYAKERKAFGQSLNEFGQVQKHVAESYAEYMAGRTYLYFVANHLDLASSGNGLDADGVKLYCAKMGKEVADRAIQVLGGYGYVGEYQVERLWRDAKLLEIGGGTSEAHHKNMVRDLKRH 471
            +++ A + S S+ +  D F PTEEH  LR M+  FV+ +V+PQAL  +R E+FN+ LFR+LGELGLLG+T   +YGGS MDA A  I HEE+S++DPAFCL++LAHS+LFVNN+A+N + AQ  KYLP ACSG  + GM MSEP  GTDVLGM TTA KS+ G +Y LNG KMWITNG L+    GD +LVYAR   TGK  +D S F+VEKG EGF LGQ+++DK GMRAS TAELVF+ C+VPVEN+VG E  A +CMMRNLEIERV LAAMS+G+ARR +EVM+ YAKER+AFG+ LN FGQ+QK++AESYAEYMAGR Y+Y  A  L L S GN +D DGVKLYC  M K VADRAIQ LGGYGYVGEY VERLWRD+KLLEIGGGT+E+HHKNMV+DL R+
Sbjct:   18 ATDGALTRSMSSSSELDLFTPTEEHGALREMLAGFVKTKVEPQALEHDRAEKFNVKLFRELGELGLLGITAPEKYGGSEMDALAAVIAHEELSSSDPAFCLSFLAHSMLFVNNVARNASDAQCQKYLPDACSGAKICGMAMSEPSVGTDVLGMRTTAKKSECGKYYVLNGTKMWITNGALNDTELGDTFLVYARTGNTGKAKQDFSSFLVEKGFEGFSLGQRIKDKCGMRASNTAELVFENCKVPVENIVGSEGSAVLCMMRNLEIERVTLAAMSLGIARRSLEVMSNYAKEREAFGRPLNNFGQIQKNIAESYAEYMAGRAYVYNTARKLKLDSVGNRVDTDGVKLYCGDMAKRVADRAIQTLGGYGYVGEYNVERLWRDSKLLEIGGGTNESHHKNMVQDLVRN 423          
BLAST of NO01G04950 vs. NCBI_GenBank
Match: XP_008896728.1 (hypothetical protein PPTG_05019 [Phytophthora parasitica INRA-310] >ETI34694.1 hypothetical protein F443_18866 [Phytophthora parasitica P1569] >ETN17138.1 hypothetical protein PPTG_05019 [Phytophthora parasitica INRA-310])

HSP 1 Score: 528.5 bits (1360), Expect = 2.200e-146
Identity = 270/422 (63.98%), Postives = 321/422 (76.07%), Query Frame = 0
Query:   57 LTTLFQPL----RPFSSEPAG-SSSYSTMTAFDPFNPTEEHSQLRGMIRAFVEKEVDPQALAFNRREEFNLTLFRKLGELGLLGLTVSVEYGGSGMDAAAVAIVHEEISAADPAFCLAYLAHSLLFVNNLAQNGTSAQKLKYLPKACSGEVVGGMCMSEPGAGTDVLGMNTTAVKSQDGSFYTLNGAKMWITNGTLDGETTGDVYLVYART---GKGPKDLSMFVVEKGTEGFGLGQKLEDKLGMRASMTAELVFDECRVPVENLVGKEHGAAICMMRNLEIERVGLAAMSVGLARRCVEVMNRYAKERKAFGQSLNEFGQVQKHVAESYAEYMAGRTYLYFVANHLDLASSGNGLDADGVKLYCAKMGKEVADRAIQVLGGYGYVGEYQVERLWRDAKLLEIGGGTSEAHHKNMVRDLKRH 471
            L  L QPL    R F++   G S S S+      F PTEEH  LR M+  FV+ +VDPQAL  +R E+FN+ LFR+LG+LGLLG+T   +YGGS MDA A  I HEE+S++DPAFCL++LAHS+LFVNN+A+N + AQ  KYLP ACSG  + GM MSEP  GTDVLGM TTA KS  G +Y LNG KMWITNG L+    GD +LVYART   GK  +D S F+VEKG EGF LGQ+++DK GMRAS TAELVF+ C+VPVEN+VG E  A +CMMRNLEIERV LAAMS+G+ARR +EVM+ YAKER+AFG+ LN FGQ+QK++AESYAEYMAGR Y+Y  A  L L S GN +D DGVKLYC  M K VADRAIQ LGGYGYVGEY VERLWRD+KLLEIGGGT+E+HHKNMV+DL R+
Sbjct:    2 LRQLRQPLLAARRSFTAAECGLSRSMSSSRELGLFTPTEEHGALREMLAGFVKTKVDPQALEHDREEKFNVKLFRELGDLGLLGITAPEKYGGSEMDALAAVIAHEELSSSDPAFCLSFLAHSMLFVNNVARNASDAQCQKYLPDACSGAKICGMAMSEPSVGTDVLGMRTTAKKSDCGKYYLLNGTKMWITNGALNDTELGDTFLVYARTGNSGKAKQDFSSFLVEKGFEGFSLGQRIKDKCGMRASNTAELVFENCKVPVENIVGTEGSAVLCMMRNLEIERVTLAAMSLGIARRSLEVMSNYAKEREAFGRPLNNFGQIQKNIAESYAEYMAGRAYVYNTARKLKLDSVGNRVDTDGVKLYCGDMAKRVADRAIQTLGGYGYVGEYNVERLWRDSKLLEIGGGTNESHHKNMVQDLVRN 423          
BLAST of NO01G04950 vs. NCBI_GenBank
Match: ETL78989.1 (hypothetical protein L917_20309 [Phytophthora parasitica] >ETM32265.1 hypothetical protein L914_20313 [Phytophthora parasitica])

HSP 1 Score: 528.5 bits (1360), Expect = 2.200e-146
Identity = 270/422 (63.98%), Postives = 321/422 (76.07%), Query Frame = 0
Query:   57 LTTLFQPL----RPFSSEPAG-SSSYSTMTAFDPFNPTEEHSQLRGMIRAFVEKEVDPQALAFNRREEFNLTLFRKLGELGLLGLTVSVEYGGSGMDAAAVAIVHEEISAADPAFCLAYLAHSLLFVNNLAQNGTSAQKLKYLPKACSGEVVGGMCMSEPGAGTDVLGMNTTAVKSQDGSFYTLNGAKMWITNGTLDGETTGDVYLVYART---GKGPKDLSMFVVEKGTEGFGLGQKLEDKLGMRASMTAELVFDECRVPVENLVGKEHGAAICMMRNLEIERVGLAAMSVGLARRCVEVMNRYAKERKAFGQSLNEFGQVQKHVAESYAEYMAGRTYLYFVANHLDLASSGNGLDADGVKLYCAKMGKEVADRAIQVLGGYGYVGEYQVERLWRDAKLLEIGGGTSEAHHKNMVRDLKRH 471
            L  L QPL    R F++   G S S S+      F PTEEH  LR M+  FV+ +VDPQAL  +R E+FN+ LFR+LG+LGLLG+T   +YGGS MDA A  I HEE+S++DPAFCL++LAHS+LFVNN+A+N + AQ  KYLP ACSG  + GM MSEP  GTDVLGM TTA KS  G +Y LNG KMWITNG L+    GD +LVYART   GK  +D S F+VEKG EGF LGQ+++DK GMRAS TAELVF+ C+VPVEN+VG E  A +CMMRNLEIERV LAAMS+G+ARR +EVM+ YAKER+AFG+ LN FGQ+QK++AESYAEYMAGR Y+Y  A  L L S GN +D DGVKLYC  M K VADRAIQ LGGYGYVGEY VERLWRD+KLLEIGGGT+E+HHKNMV+DL R+
Sbjct:    2 LRQLRQPLLAARRSFTAAECGLSRSMSSSRELGLFTPTEEHGALREMLAGFVKTKVDPQALEHDREEKFNVKLFRELGDLGLLGITAPEKYGGSEMDAIAAVIAHEELSSSDPAFCLSFLAHSMLFVNNVARNASDAQCQKYLPDACSGAKICGMAMSEPSVGTDVLGMRTTAKKSDCGKYYLLNGTKMWITNGALNDTELGDTFLVYARTGNSGKAKQDFSSFLVEKGFEGFSLGQRIKDKCGMRASNTAELVFENCKVPVENIVGTEGSAVLCMMRNLEIERVTLAAMSLGIARRSLEVMSNYAKEREAFGRPLNNFGQIQKNIAESYAEYMAGRAYVYNTARKLKLDSVGNRVDTDGVKLYCGDMAKRVADRAIQTLGGYGYVGEYNVERLWRDSKLLEIGGGTNESHHKNMVQDLVRN 423          
The following BLAST results are available for this feature:
BLAST of NO01G04950 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM29425.13.400e-17677.00isovaleryl- dehydrogenase [Nannochloropsis gaditan... [more]
CBJ27257.19.700e-16371.18isovaleryl-CoA dehydrogenase [Ectocarpus siliculos... [more]
OLP79354.11.300e-16269.88Isovaleryl-CoA dehydrogenase, mitochondrial [Symbi... [more]
PKN57635.17.200e-15069.95isovaleryl-CoA dehydrogenase [Deltaproteobacteria ... [more]
OEU18177.13.000e-14866.93acyl CoA dehydrogenase [Fragilariopsis cylindrus C... [more]
XP_002182225.16.700e-14867.26predicted protein [Phaeodactylum tricornutum CCAP ... [more]
XP_002907203.16.700e-14865.06isovaleryl-CoA dehydrogenase, putative [Phytophtho... [more]
XP_009517540.15.700e-14764.78hypothetical protein PHYSODRAFT_553331 [Phytophtho... [more]
XP_008896728.12.200e-14663.98hypothetical protein PPTG_05019 [Phytophthora para... [more]
ETL78989.12.200e-14663.98hypothetical protein L917_20309 [Phytophthora para... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL005nonsL005Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007766NSK007766Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G04950.1NO01G04950.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577567gene_522Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100707g2gene1203Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G04950.1NO01G04950.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G04950 ID=NO01G04950|Name=NO01G04950|organism=Nannochloropsis oceanica|type=gene|length=4041bp
CCTCCCCTTCATCCTCCGTACAAAATGCACCCGAAACCCGTTCCACTTGT
ACAGAATCTGCCGGTACAAACTCGGCTTAACCAGCGTGGTGCGCATGCCC
ATCAAGCAACAGTCGTCCAAGCTTCCCCTCTTACCAAATTTTCTTGAAGT
ATCCACTGCCCCCCCGTATCTCTGCCTTGGCAGGCCGTTCGTCATCGTCA
GTTCCGCATACCAAGCCAGCCCACTCTTGGTCTTATGAGGATAAAGGGAC
CGACGCTGCGACTGCTGGAACTGCACGGGGTTCAACGCAAAGGCCCCATT
CATAAACACAGCCGCAAACATCGGATTGTCTGCCTCCGTCGCCTTCTGGC
TGACTGCCCTCCCCAATGCCGCCAGCCGGTCCAACTCGTCAAAGCTTGCG
GTCATTAACCCCCCCCCGGCTTCCTGTTGGTGCCTATCCCGGAACCGCTG
CAACCCATGGAGACTCGAGTACCTTCCCGGTAAAAAATGGAAAGTCCCTG
TATATGGATTGGTCTTAATCCTCTTTCTCCTCTCATGCTCCTCCTCCGTC
AGCAACAAATTCTCAAAAAAGCTGGCTCGGGATCGATTCCCCGCACTGGG
TGCATGCTGGAAGGTGCCCAAGAATGGACTGAATTTCGGTAGGCGACCAT
ACAATCTTCTCAACCGACGAGGCATCTTGCCACCCGTCAGCTCCTCACGT
TCCCGTGCGCCGTGGTCGTCGGGGGCATGTTGGGCGATGGGGGTGGTGCT
AGTGGTGGTGGTGAGGGAGGTAGGGATAGTGCCGCCATTACCATTACCAG
CAGGAGCAGCACCAGCAGGTGGGGGGGGCACTGCAGGCGTTGAAGCTATT
GATGTGTTACCACCAGTTTGGTTCGTGGTTATTGTGTTAGGGTTAATGTT
GCACTCGATAGCAGCTGTTTCCGCCGAAAGGCCTTGCAGAGGGCCTTCTG
TTTCTTGGTGCGACGTGTCGGAGGACGAGGAAATGCCCCCGCCTGACGAG
AAAGGTAAGAGCGAGGTGGAAGAGGAGATAGAAGAAGAAGGGCTGCAGGG
AACAGAGACCGCTTCGCCGGAGGAAGAAGAGGATGTGCCTCCAGGGGAAG
ATGGAGGTTCTGAGACGGGCTCGAGCTTGTCGCTGTTCCTGCTGCTGGCG
CTATTGGTGGTGTTAGTATGGGTGTCGAGGCCAGCGTCAGGGACCTGGTC
GCACGCTAGGGCAGCTCCTCTTATGGCGTTGCTCGGGAACCTGGTCATCA
GCAAAGAGTGCACTATGGACTTGGTTGGAAGGATGGCTTGAGGTGTTGTT
GAGTTGCGGCTGGCAAATTCAACGTCCTAGGTTGGTGGACCTTCTATAGC
TCCTGCGGGCTCCTGCTGCTCCTGCTTCGGCGCGTTGTTGACGTGTGTCA
GCTACCAAAGGAGGCGCGAGACGTGTGGTGGTGCGTAGTAGTGTGGCATG
GTCGTCTTTCCGAAGATCAGAAAAGCCGGGGTTCTGACTGGTCAAGTGTT
GGGCGCACTTCGTCGCAGGACGGGTACAAAAAAGAAGAACAAGTACCAAC
TTGGGATCTGCTTCTTAAGCCTGTCAAGAGGTGGGAAGGGAAAAGGGCTG
TGGGTGAGCGCCGTGGGGTCGAATGAGACCAGGCGATGTGCCAGCTATGG
TGTTCAGGTTGGTTGAAGAGGGAGAGAAGCAAAAAAACAGGTCTCCTATG
GGTTGTAAAAGCCGCGCCACACGGCTACCCTTTGAAATTGCATGGAAACA
TCCCTCCCCGTTGGCCTCACGAGATGAGAGACATTGATGTGGTGAATGTT
GTGGTAAAGGTCGAGAAACTTTCAATTGCAGAGCCAGAGGGCACGAAACA
ACGAGGACTTGGACGACTAATCTCTGGGGCAGCTGCTGTTATTCGGGGGG
TCTCGTTCTTTTTGATTGCGAGTGACACACATTGCGTGCAAGgtaggtgg
cgtgtcgcatcgtcccgccggttgtatgtcgcttcccttgcgcttgcagt
gcctagaatgtaatctcacaatcatcagaatgaactataggtctttcatt
tccccaacttgccgaccgaacacccgattcaggcggaacaattcatgccc
accccgcacgcttaagcacgcaccacacacatacacgtacgccccacagA
ACAACCATGCAGGCCCTCGTCAACCTCGGTCGTCGCGCTGCCACCAGCCT
CGTCCATCCCCCATTCAAGGCTGCTGCTGCAATAAACCGTACAGCTGCAC
TCTCCGACTCCACCTCCTACGCGACCACCGCCCTCCTACGACGACGACTT
TTCCTCTCCACGCCCACGCACACGCTCACCACACTCTTCCAGCCTCTCCG
TCCCTTTTCCTCCGAGCCTGCGGGGTCCTCATCCTACTCGACAATGACCG
CCTTCGACCCCTTTAATCCCACAGAGGAACATAGCCAGCTTCGGGGCATG
ATTCGGGCCTTTGTCGAAAAGGAAGTGGACCCCCAAGCCTTGGCATTCAA
TCGACGGGAAGAATTCAATTTGACTTTGTTTAGGAAGCTGGGTGAACTAG
GTCTGCTGGGGTTGACGGTCTCCGTGGAGTATGGCGGGTCAGGCATGGAT
GCTGCGGCGGTGGCCATTGTGCATGAGGAGATCTCGGCTGCGGACCCAGC
ATTCTGCCTGGCTTACCTTGCCCATTCCTTGTTGTTTGTAAATAATCTGG
CGCAGAATGGGACGTCTGCTCAGAAGCTTAAGTACCTTCCGAAGGCGTGT
TCGGGGGAGGTGGTGGGAGGCATGTGTATGAGTGAGCCGGGAGCGGGGAC
TGATGTGCTAGGGATGAATACAACGGCGGTTAAGTCGCAGGATGGGTCAT
TCTACACGTTGAATGGTGCCAAAATGTGGATTACGAATGGGACGTTAGAC
GGGGAGACAACGGGGGATGTGTATCTGGTTTATGCGAGGACGGGGAAAGG
ACCTAAGGACCTGAGTATGTTTGTGGTGGAGAAGGGGACGGAGGGGTTTG
GGTTGGGGCAGAAGCTGGAGGACAAGCTGGGCATGCGCGCTTCGATGACT
GCAGAGCTGGTTTTTGATGAATGTAGGGTTCCTGTAGAAAATTTGGTGGG
AAAGGAGCATGGGGCGGCGATTTGCATGATGAGGAATTTGGAGATTGAGC
GGGTGGGACTTGCAGCCATGTCGGTTGGCTTGGCCAGGAGATGTGTAGAG
GTGATGAATCGATACGCCAAGGAGAGGAAAGCTTTTGGACAGTCGTTGAA
TGAGTTTGGTCAGGTGCAGAAACATGTGGCGGAGAGCTATGCGGAGTATA
TGGCTGGAAGGACGTACCTTTATTTTGTAGCAAATCACCTGGACTTAGCA
TCCTCGGGGAATGGGCTTGATGCGGATGGAGTAAAACTGTACTGTGCGAA
GATGGGAAAGGAGGTAGCAGATCGGGCGATTCAAGTTTTGGGGGGGTATG
GGTATGTTGGGGAGTATCAAGTGGAGAGGTTGTGGAGGGATGCGAAGTTG
CTGGAGATCGGGGGCGGTACGAGTGAGGCGCATCATAAAAATATGGTGCG
GGACTTGAAAAGGCACCATGAGCGGCTGCTATAATATTGGTGTGGGAAGA
AGGGTGGGGCCGGTGAGGGGGTTCGTAAGGTGGAAAAAAAGGAGGAGGAG
GACGACGACGACGACGACGACGACGATAATGAAACTTGGAGCCTCTCGGG
GTGCGATGGGGAATAGCTGTTCAGTTTACAGAGAAGCAGAAGGCGGAATC
TTCATAATGGGAGAAGGAAGGTTGAAAAGGGATGTAGATATCATAATGTA
CTTGTACAGGAAGCTAGAAAAGTGACAGTGGGAGAGGAGGGCAGGTGCAA
AATACACCCCCATGGAAGTGACTGTGTGTGCGAGAAGGCAAGAGCTCATG
TGAACCATCAGTAAGATAAAGGAATAAAGGGCTGTACTAGGTGTAGGGAA
AGCTCCCTTGGCAATCACAAGGCGTAATGATGTCTGTGGCTTTTGCTTTC
GCGTCCTAACATCGGGAGGTTACCTCCAAACGCCCGCCTGA
back to top

protein sequence of NO01G04950.1

>NO01G04950.1-protein ID=NO01G04950.1-protein|Name=NO01G04950.1|organism=Nannochloropsis oceanica|type=polypeptide|length=476bp
MQALVNLGRRAATSLVHPPFKAAAAINRTAALSDSTSYATTALLRRRLFL
STPTHTLTTLFQPLRPFSSEPAGSSSYSTMTAFDPFNPTEEHSQLRGMIR
AFVEKEVDPQALAFNRREEFNLTLFRKLGELGLLGLTVSVEYGGSGMDAA
AVAIVHEEISAADPAFCLAYLAHSLLFVNNLAQNGTSAQKLKYLPKACSG
EVVGGMCMSEPGAGTDVLGMNTTAVKSQDGSFYTLNGAKMWITNGTLDGE
TTGDVYLVYARTGKGPKDLSMFVVEKGTEGFGLGQKLEDKLGMRASMTAE
LVFDECRVPVENLVGKEHGAAICMMRNLEIERVGLAAMSVGLARRCVEVM
NRYAKERKAFGQSLNEFGQVQKHVAESYAEYMAGRTYLYFVANHLDLASS
GNGLDADGVKLYCAKMGKEVADRAIQVLGGYGYVGEYQVERLWRDAKLLE
IGGGTSEAHHKNMVRDLKRHHERLL*
back to top
Synonyms
Publications