NO01G01880, NO01G01880 (gene) Nannochloropsis oceanica

Overview
NameNO01G01880
Unique NameNO01G01880
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3145
Alignment locationchr1:472778..475922 -

Link to JBrowse

Properties
Property NameValue
DescriptionRibosome biogenesis gtpase
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:472778..475922 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0005525GTP binding
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR030378G_CP_dom
IPR006073GTP_binding_domain
Homology
BLAST of NO01G01880 vs. NCBI_GenBank
Match: EWM29198.1 (ribosome biogenesis gtpase [Nannochloropsis gaditana])

HSP 1 Score: 852.8 bits (2202), Expect = 1.000e-243
Identity = 607/1003 (60.52%), Postives = 693/1003 (69.09%), Query Frame = 0
Query:    1 MASRARGPTYPGTLNSVTLFVLVLTMVLMRLPQTMAFQGFVRARTSAAAASSRASLPSFATLATRPSTRQPLQQSRLVRHVRVPTVTAARK-KNXXXXXXXXXXXTSAVSPRGSKPAADDKKLGRGPRNRRHITVSAEEEEFAALSDSRAPVLGEDGLPRGRPRIASRSMGPPKKRPAMTFDPTWTAKASGGNS----GNSSSGNKALSGSITKKKAEETNRVRPPVAAVPTAIIEDRGENDGGDEEEDEMDGEISDLPKGLILRALDGESYEEARRLANLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPNKVLSMEDRLRMAETGNIFNPYVARMHTKSGPSRSQIGKGED-------DLLFDELDEKEGEMEDDMSQGDAFAFDRRPMRPVKYHYKIVMDAGTCPGCGNSFQTKNDSSPGFLPSDVFQRMQSKMMALRKTQPVKQQPGAAPLSKSXXXXXXXXXXXXXXXXXXXADLKEGERDDGGDLYQGMTAEEEVEMLLSGKDRDEFEKDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVICQRCHKLKHYGEVEDSLRPGWTDNEALTPERFRELVSVVRKKRCAVVCLVDIFDFHGSLLYNLPRIVGENPVLIVVNKADLLPTDFSEERIRIWVKQELEKVGMKEVNTRHIHLVSCKTGANVKPLLRAMKLLARQRKRDLYVIGAANVGKSTFINRLIELGRSGGDQGRNAKKSKKKKQDPSKTVGASLVTTSPLPGTTLNFIEVDLGDKVSLYDTPGLILPHQITTLLNTEELKAVIPQKRINHVTLRLKEGKSVLLGGLVRLDMVEGRPFLFTFYVSNDVKLHQTGTDRADEFLEKHIGDLVFPPFTHERREEMGPWVARDFDIEGTGWKTSAIDIVISGLGWISITGALNCKVRVMAPEAVGVRLRSPLMPYETWATTAKWTGLRAIKGDRQKGGSR 992
            MA    G  +   +   +   L+ ++ +M+LP   AFQG VR  +SA A S  A L SF +       R P+  S L R     T+ A+RK   XXXXXXXXXXX                                    F+ALSDSR  V  E    R RPR+ SR    P KR  MT +P W A     NS      ++S +   +GS   +  +   R   P+ A     +E        DE+ED +       PK +++R LD +SYEEARR A LS               XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      P + +SME+RLR+AE+GNIFNPYVARMHT++G      G+ ED        L F E D   GE  ++  +  A      P  PVK+ YK+V+ AGTCPGCGN+FQTKN+SSPGFLP DV++R+Q++M ALR   P K +P A PLSKS                      K   R + GDL+QG++AEEEVEMLLSGK R+EFE +     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  VICQRCHKLKHYG+VED+LRPGW+ NE LTPERFRELVSVVR+KRCAVVCLVDIFDFHGSLLYNLPRIVG NPVL+ VNKADLLP DFS++R+RIWVKQELEKVGM +V+TR IHL+SCKTG NV+PLLR+MK +ARQR+RDLYVIGAANVGKSTFINRLIELGRSGGD                         TS LPGTTL+FIEVDLGDKVSLYDTPGLILPHQITTLLNTEELKAVIPQKRINHVTLRLKEGKSVLLGGLVRLDM+EGRPFLFTFYVSN+VKLHQT TDRA EFL+ H+G+L+ PPFT ERR  MGPWV RDF+IEGTGWKTSA+DIVISGLGWIS+TGAL+CKVRVMAPEAVGVRLRSPLMPYETWATTAKWTGLRA+K D+QKG SR
Sbjct:    1 MAPHLSGLNFHSLVKRSSAAALLFSLFIMKLPCVGAFQGVVRVWSSAVAPSRAAVLTSFMSPKRHVLKRMPI--SALCRR---STIMASRKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFSALSDSRTSVSEEKDSIR-RPRVISRPPSRPVKR-TMTINPNWRAHGGPENSIKGPEEAASSSSGTAGSGKARVGKNGPRGASPLGAEVPRYVE--------DEDEDGI-----TFPKDMVIRGLDSQSYEEARRQAVLS-----DDEGEEEEWAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGAHLPPVRPVSMEERLRLAESGNIFNPYVARMHTRAGTGEGPSGEAEDPGPMDGGGLRFLEEDVSPGEKREEARRAQA------PSLPVKFQYKVVVGAGTCPGCGNAFQTKNESSPGFLPPDVYERLQAQMTALRPGAPRKPRPDAPPLSKSAAGALRK---------------KTETRGEEGDLFQGLSAEEEVEMLLSGKSREEFEIE---RAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAVICQRCHKLKHYGDVEDALRPGWSANELLTPERFRELVSVVRRKRCAVVCLVDIFDFHGSLLYNLPRIVGSNPVLVAVNKADLLPADFSQDRVRIWVKQELEKVGMTDVSTRDIHLISCKTGNNVRPLLRSMKQMARQRRRDLYVIGAANVGKSTFINRLIELGRSGGD-----AXXXXXXXXXXXXXXXXXXXTSALPGTTLDFIEVDLGDKVSLYDTPGLILPHQITTLLNTEELKAVIPQKRINHVTLRLKEGKSVLLGGLVRLDMLEGRPFLFTFYVSNEVKLHQTATDRAGEFLDSHLGELISPPFTQERRAAMGPWVPRDFEIEGTGWKTSAVDIVISGLGWISVTGALDCKVRVMAPEAVGVRLRSPLMPYETWATTAKWTGLRAVKSDKQKGSSR 949          
BLAST of NO01G01880 vs. NCBI_GenBank
Match: CBN74939.1 (Lrc5, mitochondrial YqeH-related GTPase [Ectocarpus siliculosus])

HSP 1 Score: 405.2 bits (1040), Expect = 5.800e-109
Identity = 196/405 (48.40%), Postives = 267/405 (65.93%), Query Frame = 0
Query:  589 VICQRCHKLKHYGEVEDSLRPGWTDNEALTPERFRELVSVVRKKRCAVVCLVDIFDFHGSLLYNLPRIVGENPVLIVVNKADLLPTDFSEERIRIWVKQELEKVGMKEVNTRHIHLVSCKTGANVKPLLRAMKLLARQRKRDLYVIGAANVGKSTFINRLIELGRSGGDQGRNAKKSKKKKQDPSKTVGASLVTTSPLPGTTLNFIEVDLGDKVSLYDTPGLILPHQITTLLNTEELKAVIPQKRINHVTLRLKEGKSVLLGGLVRLDMVEGRPFLFTFYVSNDVKLHQTGTDRADEFLEKHI--GDLVFPPFTHERREEMGPWVARDFDIEGTGWKTSAIDIVISGLGWISITGALNCKVRVMAPEAVGVRLRSPLMPYETWATTAKWTGLRAIKGDRQKGGSR 992
            ++CQRC++L++YG VED+LRPG++D++ LTP+RF EL+  +RK+RC ++ LVD+FDFHG+ LYNLP+I G NPVL+  NK DLLP D   +R+  WV+ +  + G+ ++  R +HLVSCK G  + PL+R                                 G  GG +G  A             V    VT S +PGTTL+F++VDLGDK +LYDTPGL+LPH +T+ LN EEL+A IP+K+++HVT R+ EGK VL+GGL R+++V GRPFL TF+VSNDV+LH T   R D+ L +H+  G ++FPPF  ER +E+GP V  DFDI G GW+ SA D+VI+GLGW+S+TGA    +RV AP  V V  R PL+PYE+W TTAK+TG   +K  R+K G R
Sbjct:  376 LVCQRCYRLRNYGSVEDTLRPGFSDSDLLTPQRFLELLGSIRKQRCLIIYLVDLFDFHGTFLYNLPKITGNNPVLVAGNKVDLLPKDLKRQRVTKWVRDKCRESGLPDMEMRDVHLVSCKHGVGIPPLMRK--------------------------------GGKGGGRGGKA-----------PAVAGRGVTVSSVPGTTLDFLKVDLGDKRALYDTPGLLLPHTLTSRLNAEELRAAIPKKKVDHVTFRVGEGKVVLVGGLARVEVVTGRPFLLTFFVSNDVRLHPTDARRVDDMLSEHVGKGQMIFPPFDPERVDELGPLVPTDFDIMGAGWRESAADVVIAGLGWVSVTGAGPVTLRVWAPRGVLVMAREPLLPYESWETTAKFTGGSTVKKGRKKQGRR 737          
BLAST of NO01G01880 vs. NCBI_GenBank
Match: GAX26013.1 (hypothetical protein FisN_4Hh492 [Fistulifera solaris])

HSP 1 Score: 386.3 bits (991), Expect = 2.800e-103
Identity = 216/586 (36.86%), Postives = 329/586 (56.14%), Query Frame = 0
Query:  420 KIVMDAGTCPGCGNSFQTKNDSSPGFLPSDVFQRMQSKMMALRKTQPVKQQPGAAPLSKSXXXXXXXXXXXXXXXXXXXADLKEGERDDGGDLYQGMTAEEEVEMLL--SGKDRDEFEKDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVICQRCHKLKHYGEVEDSLRPGWTDNEALTPERFRELVSVVRKKRCAVVCLVDIFDFHGSLLYNLPRIVGENPVLIVVNKADLLPTDFSEERIRIWVKQELEKVGMKEVNT--RHIHLVSCKTGANVKPLLRAMKLLARQRKRDLYVIGAANVGKSTFINRLIELGRSGGDQGRNAKKSKKKKQDPSKTVGASLVTTSPLPGTTLNFIEVDLGDKVSLYDTPGLILPHQITTLLNTEELKAVIPQKRINHVTLRLKEGKSVLLGGLVRLDMVEG-RPFLFTFYVSNDVKLHQTGTDRADEFLEKHIGDLVFPPFTH--ERREEMGPWVARDFDIEGTGWKTSAIDIVISGLGWISITGALNCKVRVMAPEAVGVRLRSPLMPYETWATTAKWTGLRAIK-------GDRQKGGSR 992
            K+V +A TC  CG  FQ+ +++ PG+LP + F  ++ K+  L + Q ++++  +                                           T E+E+E L+  SGK+      +                                                   VIC+RCH L+++G+V+++LRPGWT    ++ E+F EL+  +R+K   +V LVD+FDF GS+L  L  I G+NPV++  NKADLLP+     R   WV++ELE +G+K +      + LVSCKTG  +  +L   + LA +R  D+YVIG+AN GKST IN ++     GG +  + +  K++  + +   G   VTTSPLPGTTL FI+VDLGD   LYDTPGL++P   T LL  +ELK V+P KR+  +T R++ GK VL+GGL R+++++  +PFLFTF+VSND+KLH T  D+A +F++KH G ++ PP T   ER E++G +     +IEG+GWK +A DI I+GLGW+++TGA   KV++  P+++G+ +R PLMP++ W +TAK+TG +A++       G R+KG  R
Sbjct:  234 KLVTNAMTCSACGVDFQSTSENRPGYLPPEKFD-LRVKLSKLEEMQRLQEKADS----------------------------------------DSWTPEDEIEWLIQTSGKENSPNSDN-----------------------------YIDINTMAEEMELDLSKLSEKKVICKRCHGLQNFGKVDETLRPGWTKEPMISQEKFLELLRPLREKTAVIVALVDLFDFSGSVLPELDMIAGDNPVILAANKADLLPSKMGTLRAENWVRRELEYLGVKSLANIGGSVRLVSCKTGVGIDKMLDKARQLAEERDCDIYVIGSANAGKSTLINHIL-----GGYRSHDGEPRKRRAGNANARRGQ--VTTSPLPGTTLRFIKVDLGDGRFLYDTPGLLVPGTFTQLLTADELKMVVPSKRVEPITFRIEPGKCVLIGGLARIELMDDCKPFLFTFFVSNDIKLHPTSVDKASDFVKKHAGGILTPPLTPGVERMEQIGDFEEHVVEIEGSGWKEAAADITITGLGWVAVTGAGPAKVKICVPKSIGISVRPPLMPFDMWESTAKYTGNKAVRKTSKSSSGKRRKGVGR 742          
BLAST of NO01G01880 vs. NCBI_GenBank
Match: GAX24367.1 (hypothetical protein FisN_4Lh492 [Fistulifera solaris])

HSP 1 Score: 384.0 bits (985), Expect = 1.400e-102
Identity = 220/617 (35.66%), Postives = 337/617 (54.62%), Query Frame = 0
Query:  387 ELDEKEGEMEDDMSQGDAFAFDRRPMRPVKYHYKIVMDAGTCPGCGNSFQTKNDSSPGFLPSDVFQRMQSKMMALRKTQPVKQQPGAAPLSKSXXXXXXXXXXXXXXXXXXXADLKEGERDDGGDLYQGMTAEEEVEMLLSGKDRDEFEKDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVICQRCHKLKHYGEVEDSLRPGWTDNEALTPERFRELVSVVRKKRCAVVCLVDIFDFHGSLLYNLPRIVGENPVLIVVNKADLLPTDFSEERIRIWVKQELEKVGMKEVNT--RHIHLVSCKTGANVKPLLRAMKLLARQRKRDLYVIGAANVGKSTFINRLIELGRSGGDQGRNAKKSKKKKQDPSKTVGASLVTTSPLPGTTLNFIEVDLGDKVSLYDTPGLILPHQITTLLNTEELKAVIPQKRINHVTLRLKEGKSVLLGGLVRLDMVEG-RPFLFTFYVSNDVKLHQTGTDRADEFLEKHIGDLVFPPFTH--ERREEMGPWVARDFDIEGTGWKTSAIDIVISGLGWISITGALNCKVRVMAPEAVGVRLRSPLMPYETWATTAKWTGLRAIK-------GDRQKGGSR 992
            +LD+   ++  D      ++ D +  +  +   K+V +A TC  CG  FQ+ ++S PG+LP + F  +Q K+  L + Q ++++  +                                           T E+E+E L+    ++                                                        VIC+RCH L+++G+VE++LRPGWT    ++ E+F EL+  +R+K   +V LVD+FDF GS+L  L  I G+NPV++  NKADLLP      R   WV++ELE +G+K +      + LVSCKTG  V  +L   + LA +   D+YVIG+AN GKST INR++     GG +  + +  K++  + +   G   VTTSPLPGTTL FI+VDLGD   LYDTPGL++P   T LL  +ELK V+P KR+  +T R++ GK VL+GGL R+++++  +PFLFTF+VSND+KLH T  D+A +F++KH G ++ PP     ER E++G +     +IEG+GWK +A DI I+GLGW+++TGA   KV++  P+++G+ +R PLMP++ W +TAK+TG +A++       G R+KG  R
Sbjct:  201 QLDDYAKQLSADDVGALRYSTDGQIAKQKENLSKLVTNAMTCSACGVDFQSTSESRPGYLPPEKFD-LQVKLGKLEEMQRLQEKADS----------------------------------------DSWTPEDEIEWLIQTSGKENLPHS---------------------------DNYIDINTMAEEMDLDFSKVSEKKVICKRCHGLQNFGKVEETLRPGWTKEPMISQEKFLELLRPLREKTAVIVALVDLFDFSGSVLPELDMIAGDNPVILAANKADLLPLKMGTLRAENWVRRELEYLGVKSLANIGGSVRLVSCKTGVGVDKMLDKARQLAEELGCDIYVIGSANAGKSTLINRIL-----GGYRSHDEEPRKRRAGNANARRGQ--VTTSPLPGTTLRFIKVDLGDGRFLYDTPGLLVPGTFTQLLTADELKMVVPSKRVEPITFRIEPGKCVLIGGLARIELMDDCKPFLFTFFVSNDIKLHPTSVDKASDFVKKHAGGILTPPLAPGIERMEQIGDFEEHVVEIEGSGWKEAAADITITGLGWVAVTGAGPAKVKICVPKSIGISVRPPLMPFDMWESTAKYTGNKAVRKISKSSSGKRRKGVGR 742          
BLAST of NO01G01880 vs. NCBI_GenBank
Match: XP_002184124.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC44302.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 382.5 bits (981), Expect = 4.000e-102
Identity = 214/573 (37.35%), Postives = 318/573 (55.50%), Query Frame = 0
Query:  414 PVKYHYKIVMDAGTCPGCGNSFQTKNDSSPGFLPSDVFQRMQSKMMALRKTQPVKQQPGAAPLSKSXXXXXXXXXXXXXXXXXXXADLKEGERDDGGDLYQGMTAEEEVEMLLSGKDRDEFEKDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVICQRCHKLKHYGEVEDSLRPGWTDNEALTPERFRELVSVVRKKRCAVVCLVDIFDFHGSLLYNLPRIVGENPVLIVVNKADLLPTDFSEERIRIWVKQELEKVGMKEVNTRH--IHLVSCKTGANVKPLLRAMKLLARQRKRDLYVIGAANVGKSTFINRLIELGRSGGDQGRNAKKSKKKKQDPSKTVGASLVTTSPLPGTTLNFIEVDLGDKVSLYDTPGLILPHQITTLLNTEELKAVIPQKRINHVTLRLKEGKSVLLGGLVRLDMV-EGRPFLFTFYVSNDVKLHQTGTDRADEFLEKHIGDLVFPPFT--HERREEMGPWVARDFDIEGTGWKTSAIDIVISGLGWISITGALNCKVRVMAPEAVGVRLRSPLMPYETWATTAKWTGLRAI 982
            P K  +++V ++ +C  CG+ FQ  N+  PG+LP + F    +   AL K + +++    A  ++                                      T E+E+E L+  + + +  K+                                                   VIC+RCH L+++G+V+DSLRPGWT    L+ E+FREL+  +++K   +V LVD+FDF GS+L  L  I GENPV++  NKADLLP++    R   WV++ELE +G+K +      + LVSCKTGA +  LL   + LA +   D+YV+GAAN GKST +N ++     G D+     +S  K +  ++      VTTSPLPGTTL FI+VDLG   SLYDTPGL++   +T LL  EELK V+P+K I  VTLRL  GK VL+GGL R++++ + RPF+FTF+V+N++KLH T  +RADEF+ KH G ++ PP     +R EE+G +     DI+G GWK +A DI ++GLGW+++TGA   +V++  P+ +GV +R PLMP++ W   +K+TG RA+
Sbjct:  201 PRKERFQLVTNSMSCSACGSDFQCHNEDRPGYLPPEKF----ATQTALGKIEQMQKLQDKAEKAE-------------------------------------WTPEDEIEWLIQTQGKKDPNKE------------------------MQEVPQIDVDSLAGEMGLDLVELSKKMVICKRCHGLQNFGKVQDSLRPGWTKEPLLSQEKFRELLRPIKEKPAVIVALVDLFDFSGSVLPELDEIAGENPVILAANKADLLPSEMGRVRAESWVRRELEYLGVKSLAGMRGAVRLVSCKTGAGINDLLEKARGLAEEIDGDIYVVGAANAGKSTLLNFVL-----GQDK---VNRSPGKARAGNRNAFKGAVTTSPLPGTTLKFIKVDLGGGRSLYDTPGLLVLGTVTQLLTPEELKIVVPKKPIEPVTLRLSTGKCVLVGGLARIELIGDSRPFMFTFFVANEIKLHPTDIERADEFVLKHAGGMLTPPLAPGPKRMEEIGEFEDHIVDIQGAGWKEAAADISLTGLGWVAVTGAGTAQVKISVPKGIGVSVRPPLMPFDIWKVASKYTGSRAV 700          
BLAST of NO01G01880 vs. NCBI_GenBank
Match: EJK65712.1 (hypothetical protein THAOC_13399 [Thalassiosira oceanica])

HSP 1 Score: 364.4 bits (934), Expect = 1.100e-96
Identity = 183/415 (44.10%), Postives = 270/415 (65.06%), Query Frame = 0
Query:  589 VICQRCHKLKHYGEVEDSLRPGWTDNEALTPERFRELVSVVRKKRCAVVCLVDIFDFHGSLLYNLPRIVGENPVLIVVNKADLLPTDFSEERIRIWVKQELEKVGMKEVNT--RHIHLVSCKTGANVKPLLRAMKLLARQRKRDLYVIGAANVGKSTFINRLIELGRSGGDQGRNAKKSKKKKQDPSKTVGASLVTTSPLPGTTLNFIEVDLGDKVSLYDTPGLILPHQITTLLNTEELKAVIPQKRINHVTLRLKEGKSVLLGGLVRLDMV-EGRPFLFTFYVSNDVKLHQTGTDRADEFLEKHIGDLVFPPFT--HERREEMGPWVARDFDIEGTGWKTSAIDIVISGLGWISITGALNCKVRVMAPEAVGVRLRSPLMPYETWATTAKWTGLRAIK-------GDRQKGGSR 992
            VIC+RCH L+++G VE +LRPGWTD   L+ E+FR+L+  ++ K   ++ LVD+FDF GS+L  L +I G+NPV++  NKADLLP++    R   WV++ELE + +  +      + LVSCKTG  +  L+   + LA +++ D+YV+GAAN GKS                G + K  K +  + +K  G+  VTTSPLPGTTL FI+VDL     LYDTPGL++P  +T  L  EELK V+P+KR+  VT R++ GK  L+GGL R++++ + +PFLFTF+V+N++KLH T + +AD+F+  H+G L+ PP      R EE+G +   + +++G GWK +A DI + GLGW+++TGA   KVR+  P+ +GV LR PLMP++ W TTAK+TG R+++       G R+KG  R
Sbjct:  214 VICKRCHGLQNFGTVEKNLRPGWTDEPTLSQEQFRKLLMPLQNKVAVIIALVDLFDFSGSVLPELDKIAGDNPVILAANKADLLPSEMGHVRAENWVRRELEYLDVNSIANIGGAVRLVSCKTGYGISALMEKAQSLAEEKECDIYVVGAANAGKSY--------------DGASKKNGKMRAGNANKWKGS--VTTSPLPGTTLQFIKVDLSGGKVLYDTPGLLVPGCLTERLTPEELKIVVPKKRVEPVTFRIQAGKCALVGGLARVELIGDCKPFLFTFFVANEIKLHLTSSLKADDFISSHVGKLLTPPLEPGQARLEEIGEFEYHEIEVQGEGWKQAAADITLRGLGWVAVTGAGRAKVRIGVPKGIGVSLRPPLMPFDVWETTAKYTGGRSVRKSGKSRTGKRRKGVGR 612          
BLAST of NO01G01880 vs. NCBI_GenBank
Match: XP_005713542.1 (unnamed protein product [Chondrus crispus] >CDF33723.1 unnamed protein product [Chondrus crispus])

HSP 1 Score: 352.8 bits (904), Expect = 3.400e-93
Identity = 179/427 (41.92%), Postives = 263/427 (61.59%), Query Frame = 0
Query:  590 ICQRCHKLKHYGEVEDSLR---------------PGWTDNE---------ALTPERFRELVSVVRKKRCAVVCLVDIFDFHGSLLYNLPRIVGE-NPVLIVVNKADLLPTDFSEERIRIWVKQELEKVGMKEVNTRHIHLVSCKTGANVKPLLRAMKLLARQRKRDLYVIGAANVGKSTFINRLIELGRSGGDQGRNAKKSKKKKQDPSKTVGASLVTTSPLPGTTLNFIEVDLGDKVSLYDTPGLILPHQITTLLNTEELKAVIPQKRINHVTLRLKEGKSVLLGGLVRLDMVEGRPFLFTFYVSNDVKLHQTGTDRADEFLEKHIGDLVFPPFTHERREEMGPWVARDFDIEGTGWKTSAIDIVISGLGWISITGALNCKVRVMAPEAVGVRLRSPLMPYETWATTAKWTGLRAIKGDRQKGGSR 992
            +CQRC++L HYG++E  LR                  TD E          L+P +FR  +  +R     ++ LVDIFDFHG+ + ++  I+G+ NP+++ VNK DLLP ++   R+  W+K E   +G+ +V    IHLVS   G  V  L+     +A+QR+ D+YVIGAANVGKS+FINRL+ + R G   G  +K   + ++D +       +TTS +PGTTL+ I + LG KV+LYDTPGL++ HQ+T  L+ +EL+AV+P K + +VT RL EGK++ +GGL RL++V G+PF FT + +  VK+H    D A EFL +H+GD + PPF+ E  E++G W ++ F  EG  WK S +DIV+SGLGWIS+TG    ++R+  P  VGV  R PLMP+ET    +K+TG  A+   + +  S+
Sbjct:   90 VCQRCYRLTHYGKIESHLRVKPKRTFPLPRTSSLSDKTDIEKESSGDGLSELSPRKFRRTLERLRNVNAVIIFLVDIFDFHGTFIPSVEDIIGQKNPIILAVNKVDLLPKNYKASRVEGWIKHECSVMGLHDV--AGIHLVSSTKGTGVGELVADALRIAKQRRSDVYVIGAANVGKSSFINRLMRI-RKGKGNGSRSKDDGRPRRDKT---SLGTITTSVVPGTTLDVIRIPLGGKVNLYDTPGLMISHQLTNFLDAKELRAVLPSKSVENVTFRLAEGKAIYIGGLARLEVVSGKPFFFTCFFAPTVKIHPGRADGAHEFLHRHVGDFLTPPFSEEGLEKLGEWTSKSFTAEGQSWKKSCVDIVLSGLGWISVTGPGKVRLRIWVPRGVGVFTREPLMPFETDVGVSKYTGSTAVNRKQMRKSSK 510          
BLAST of NO01G01880 vs. NCBI_GenBank
Match: XP_005706222.1 (GTP-binding protein [Galdieria sulphuraria] >EME29702.1 GTP-binding protein [Galdieria sulphuraria])

HSP 1 Score: 338.6 bits (867), Expect = 6.600e-89
Identity = 177/417 (42.45%), Postives = 260/417 (62.35%), Query Frame = 0
Query:  590 ICQRCHKLKHYGEVEDSLRPGWTDNEA-----LTPERFRELVSVVRKKRCAVVCLVDIFDFHGSLLYNLPRIVGENPVLIVVNKADLLPTDFSEERIRIWVKQELEKVGMKEVNTRHIHLVSCKTGANVKPLLRAMKLLARQRKRDLYVIGAANVGKSTFINRLIE-----------LGRSGGDQGR----NAKKSKKKKQDPSKTVGASLVTTSPLPGTTLNFIEVDLGDKVSLYDTPGLILPHQITTLLNTEELKAVIPQKRINHVTLRLKEGKSVLLGGLVRLDMVEGRPFLFTFYVSNDVKLHQTGTDRADEFLEKHIGDLVFPPFTHERREEMGPWVARDFDIEGTGWKTSAIDIVISGLGWISITGALNCKVRVMAPEAVGVRLRSPLMPYETWATTAKWTGLRAIKGDRQ 987
            +CQRC+ + H   VED L+ G T++        + + F + +  +  KRC +V +VDIFDF GS +  LP I G NPV+++VNK DLLP D +  R+ +W+K + E  G+ +++   IH VSC     +      +  L +    D+YV+G  NVGKSTFINRL+            L   G  QG+      K++ K K+DP        +TTS  PGTTLN I +  G   S+YDTPG+I PHQIT LL +EE+K V+P+KR+  V+ RL EGK +  GGL RL+M++G+PF FT ++SN+VK+H + T +A+E LE H+G L+ PP +  + +E+G + A++F+++G GW  S+ DIVISGLGW+++TG    KVRV+AP+ VGV LR P+ P+E     +K+TG +A  G+R+
Sbjct:  137 VCQRCYYMVHRTLVEDQLKIGATEDSTNKDILHSLKLFEQRLENICSKRCIIVYMVDIFDFDGSFVSRLPFITGNNPVILIVNKIDLLPKDINIGRLYVWLKNQCEARGLTKIH--RIHFVSCTKDYRMGETKADIIRLVQYLNADVYVVGCTNVGKSTFINRLLSNTVEKKTGQELLNYLGLKQGQFSLTELKRAFKDKKDPQ-------LTTSCFPGTTLNPIRIHFGRSHSMYDTPGIIQPHQITHLLTSEEIKMVLPKKRVRVVSFRLMEGKCIHFGGLARLEMLQGKPFFFTVFMSNEVKVHPSTTAKAEELLETHVGGLLQPPISWRKYKELGNFKAKEFEVDGVGWLQSSHDIVISGLGWVAVTGCGRLKVRVVAPKGVGVFLREPIAPFEVLKGVSKYTGYKAFAGNRE 544          
BLAST of NO01G01880 vs. NCBI_GenBank
Match: XP_004354073.1 (ribosome biogenesis GTPase YqeH, putative [Acanthamoeba castellanii str. Neff] >ELR24376.1 ribosome biogenesis GTPase YqeH, putative [Acanthamoeba castellanii str. Neff])

HSP 1 Score: 282.0 bits (720), Expect = 7.400e-72
Identity = 165/394 (41.88%), Postives = 231/394 (58.63%), Query Frame = 0
Query:  590 ICQRCHKLKHYGEVEDSLRPGWTDNEALTPERFRELVSVVRKKRCAVVCLVDIFDFHGSLLYNLPRIVGENPVLIVVNKADLLPTDFSEERIRIWVKQELEKVGMKEVNTRHIHLVSCKTGANVKPLLRAMKLLARQRKRDLYVIGAANVGKSTFINRLIELGRSGGDQGRNAKKSKKKKQDPSKTVGASLVTTSPLPGTTLNFIEVDLGDKVS--------LYDTPGLILPHQITTLLNTEELKAVIPQKRINHVTLRLKEGKSVLLGGLVRLDMVEG-RPFLFTFYVSNDVKLHQTGTDRADEFLEKHIGDLVFPPFTHERREEMGPWVARDFDIEGT----GWKTSAIDIVISGLGWISI---TGALNCKVRVMAPEAVGVRLRSPLMPYE 968
            +CQRCH L+H+G V     P          E  +E + ++  + C VV +VDIFDF GS + +   I G NPV++V NK DLLP     ERI+IW+K+   ++G+K  N R +HL+S K+G  V  L R ++ L  +++RD+YV+G  NVGKST INRLI +      +G     +    Q P K    +L+TTS +PGTTLN I   LG K +        LYDTPG+I  HQ+  LLN EEL   +P++RI  VT RL  GK++  GGL RLD V+G  P   T ++S ++K+H T   +AD+ + KH G L+ PP   ER +++  ++A+D  IE      G K S  DIV SGLGW S+   T   +  +R ++PE VG+ LR PLMP+E
Sbjct:   44 VCQRCHSLRHHGIVTPLKVP---------YEEVKEHLKLISDQSCLVVKIVDIFDFSGSFINDFRGITGNNPVVLVGNKLDLLPVGAKPERIQIWLKRLATEMGLK--NVRSVHLISAKSGEGVHSLSRKIEQL--RKERDVYVVGCTNVGKSTLINRLISI----NTKGTYNSLTVHIVQGPKK---RNLITTSIVPGTTLNLISFPLGGKKAFKMGKRAFLYDTPGVINKHQMANLLNMEELSITLPKRRIQPVTYRLVPGKALFFGGLGRLDYVDGPGPLYLTLFLSKELKVHPTSIAKADDVMSKHAGTLLVPPLGEERAKQLPEFIAKDIHIEADEERGGLKKSFADIVFSGLGWTSLVTPTFDRDIHLRSLSPEGVGIFLREPLMPFE 417          
BLAST of NO01G01880 vs. NCBI_GenBank
Match: WP_078597253.1 (ribosome biogenesis GTPase YqeH [[Bacillus] clarkii])

HSP 1 Score: 261.5 bits (667), Expect = 1.000e-65
Identity = 151/376 (40.16%), Postives = 218/376 (57.98%), Query Frame = 0
Query:  589 VICQRCHKLKHYGEVEDSLRPGWTDNEALTPERFRELVSVVRKKRCAVVCLVDIFDFHGSLLYNLPRIVGENPVLIVVNKADLLPTDFSEERIRIWVKQELEKVGMKEVNTRHIHLVSCKTGANVKPLLRAMKLLARQRK-RDLYVIGAANVGKSTFINRLIELGRSGGDQGRNAKKSKKKKQDPSKTVGAS---LVTTSPLPGTTLNFIEVDLGDKVSLYDTPGLILPHQITTLLNTEELKAVIPQKRINHVTLRLKEGKSVLLGGLVRLDMVEGRPFLFTFYVSNDVKLHQTGTDRADEFLEKHIGDLVFPPFTHERREEMGPWVARDFDIEGTGWKTSAIDIVISGLGWISITGALNCKVRVMAPEAVGVRLR 961
            VICQRC KLKHY EV+D          +LT + F ++++ +  +   +V LVDIFDF GS L  L R  G+N VL+V NK DLLP      ++  W+K+  ++ G+K      +HL+S  TG  V   +    L+   RK RD+YV+G+ NVGKSTFINRL+                        K  GA    ++TTS +PGTTL+ I+V L D  SLYDTPG+I  HQ+  LL+ +ELK + P+K I     +L +G+++ LGGL R+D V+G    F  YVSND+ +H+T  ++ADE  EKH+G+L+ PPF  + +++   + AR++ ++         DIVISGLGWI++ G     V+  AP+ V V +R
Sbjct:   39 VICQRCFKLKHYNEVQD---------VSLTDDDFLKILNEIGSRDALIVKLVDIFDFDGSWLPGLHRFAGKNKVLLVGNKVDLLPKSVKRNKLTNWMKERSKEYGLK---AEEVHLMSAATGEGV---IETANLIEEHRKGRDVYVVGSTNVGKSTFINRLL------------------------KEFGAEDEFMITTSNIPGTTLDMIDVPLDDGSSLYDTPGIINHHQMAHLLDKKELKVISPKKEIKPKVFQLGDGQTLFLGGLARVDFVQGSDMSFVCYVSNDLNIHRTKLEKADELYEKHLGELLTPPF-KKNKDDFPEFTAREWKLQ-----NEKQDIVISGLGWITVHGK-GAFVKTYAPKGVHVTIR 368          
The following BLAST results are available for this feature:
BLAST of NO01G01880 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM29198.11.000e-24360.52ribosome biogenesis gtpase [Nannochloropsis gadita... [more]
CBN74939.15.800e-10948.40Lrc5, mitochondrial YqeH-related GTPase [Ectocarpu... [more]
GAX26013.12.800e-10336.86hypothetical protein FisN_4Hh492 [Fistulifera sola... [more]
GAX24367.11.400e-10235.66hypothetical protein FisN_4Lh492 [Fistulifera sola... [more]
XP_002184124.14.000e-10237.35predicted protein [Phaeodactylum tricornutum CCAP ... [more]
EJK65712.11.100e-9644.10hypothetical protein THAOC_13399 [Thalassiosira oc... [more]
XP_005713542.13.400e-9341.92unnamed protein product [Chondrus crispus] >CDF337... [more]
XP_005706222.16.600e-8942.45GTP-binding protein [Galdieria sulphuraria] >EME29... [more]
XP_004354073.17.400e-7241.88ribosome biogenesis GTPase YqeH, putative [Acantha... [more]
WP_078597253.11.000e-6540.16ribosome biogenesis GTPase YqeH [[Bacillus] clarki... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL006nonsL006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008160NSK008160Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G01880.1NO01G01880.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Lrc5gene1504Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G01880.1NO01G01880.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G01880 ID=NO01G01880|Name=NO01G01880|organism=Nannochloropsis oceanica|type=gene|length=3145bp
AGAAAGTAAGCGGCGGATCCGAGCCCAGGCCATTGTGTTACCTCTGCGTC
GTCCTGCCCATCCAACTTCAGCTCCAGCCAACCACCCCCTAGCTCCCCCA
GCCCCCGTCTTCCAGCGGCCCTATTTCATGGCATCACGCGCCAGGGGCCC
AACTTACCCGGGAACCCTAAATAGTGTGACTTTATTCGTGCTAGTGCTCA
CGATGGTTCTCATGCGGTTACCGCAGACCATGGCCTTTCAAGGCTTTGTG
CGGGCTCGGACCTCAGCAGCAGCAGCGTCGTCTCGCGCCTCCCTCCCCTC
CTTCGCCACCCTGGCCACACGGCCCTCCACAAGACAGCCCTTGCAGCAAT
CCAGATTAGTCCGACACGTGCGCGTGCCCACGGTCACGGCGGCTCGCAAG
AAGAACGATGAAGAGGGCCGCGACGAGGCGGCAGCAGCAACATCCGCAGT
GTCACCAAGAGGGAGCAAGCCAGCAGCAGACGACAAGAAGTTAGGGCGTG
GGCCTCGCAACCGTCGGCACATTACCGTCAGTGCTGAGGAGGAGGAATTT
GCGGCATTGTCTGATTCGCGGGCGCCGGTTTTGGGGGAGGATGGGCTGCC
TCGTGGACGACCTCGCATTGCCTCTCGCTCGATGGGACCTCCGAAGAAGA
GGCCCGCTATGACATTCGATCCGACCTGGACGGCCAAAGCCAGCGGTGGC
AACAGCGGTAACAGTAGTAGTGGAAATAAGGCCTTGAGCGGGAGTATTAC
CAAGAAGAAGGCAGAAGAGACTAATCGGGTACGACCTCCGGTGGCGGCTG
TGCCCACGGCGATAATTGAGGATCGGGGGGAGAACGACGGTGGGGACGAG
GAGGAAGACGAAATGGACGGGGAGATTTCAGATTTACCGAAAGGTTTGAT
ACTCCGGGCGTTAGATGGTGAGAGTTATGAGGAGGCACGTCGATTGGCGA
ATTTGAGTGATGACGAGGGGGAGGAGGAGGACAACGACGAGGACTTGGAG
GAGGAGGGGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAAGAAGAAGAAGA
AGAGGAAGAGGAACGAGAGCCCTTACCTGACGATATCGTGTTTGGCGACG
ACGATGACGATGATGATGAGGATGAGCTTCCTCCTTTGCCCCCTAACAAG
GTTTTGTCGATGGAGGACCGGTTGCGGATGGCGGAGACAGGGAATATTTT
CAATCCCTATGTCGCGAGGATGCACACCAAGTCAGGGCCTAGCCGGAGCC
AAATTGGCAAGGGGGAGGACGACCTTTTATTTGACGAGCTGGACGAGAAG
GAGGGCGAGATGGAGGACGATATGTCTCAAGGTGATGCATTTGCCTTTGA
CCGTCGGCCGATGCGCCCTGTGAAGTACCACTATAAAATTGTTATGGACG
CCGGGACCTGCCCTGGGTGTGGAAATTCCTTCCAGACAAAGAATGACTCG
TCCCCGGGGTTTCTTCCCTCTGATGTTTTCCAGCGAATGCAGAGTAAGAT
GATGGCCTTGAGGAAGACACAGCCTGTGAAGCAGCAACCTGGTGCGGCGC
CTCTCTCTAAATCTGCAGCAGGGGCTAGGAGGAAACAGCAGCAGATGGAG
GCGGTTGCGGCGGCGCTGGCCGCGGATTTGAAGGAGGGAGAGAGGGATGA
TGGAGGGGATCTGTACCAAGGTATGACGGCGGAGGAGGAGGTGGAGATGC
TCTTATCGGGGAAGGACAGGGATGAGTTTGAGAAGGACGCGGCGGGGAAG
GAGGGAGGGAGAAAAGGAGGGAAGGCGATAATTGTTGTGGAGGAGGAGGA
TGAATTAGATGAGAAGGAGGAGCAGCAGCAGGAGGAGGGAGGGAGGGAGG
GAGGGAAGAAGGAAGGGGAGGAGGATGGTGATGACCGGACGGTGATTTGC
CAGAGGTGCCATAAATTGAAGCATTACGGTGAAGTGGAGGATAGCCTTAG
ACCAGGGTGGACTGATAACGAGGCCTTGACCCCTGAGAGGTTTAGAGAGC
TCGTGAGTGTGGTTAGGAAGAAGAGGTGCGCGGTTGTGTGTTTGGTGGAT
ATATTTGATTTTCACGGGTCGTTGCTGTACAACCTGCCGAGGATCGTGGG
AGAGAACCCTGTCTTGATTGTGGTAAACAAAGCGGACTTGCTACCGACCG
ATTTTTCGGAGGAGCGGATCAGGATATGGGTGAAGCAGGAGCTCGAGAAG
GTGGGGATGAAGGAAGTGAATACAAGGCACATTCACTTGGTGTCGTGTAA
GACGGGGGCGAATGTCAAGCCTTTGCTAAGAGCGATGAAGTTGCTGGCAA
GGCAAAGGAAAAGGGATTTGTACGTGATTGGAGCAGCTAACGTGGGGAAG
AGCACGTTTATCAACCGGTTGATTGAGCTGGGGAGGAGTGGGGGCGATCA
GGGGAGGAATGCGAAGAAGAGCAAGAAGAAGAAGCAGGATCCGAGTAAGA
CGGTAGGAGCGTCTCTGGTGACGACGAGCCCATTGCCGGGCACGACGCTC
AATTTTATTGAGGTGGATTTGGGAGATAAGGTGTCTTTGTATGACACTCC
CGGACTGATTCTACCGCATCAGATTACCACGTTATTGAACACGGAAGAGC
TTAAGGCAGTGATTCCTCAGAAGAGGATCAACCATGTGACGTTGCGGTTG
AAAGAGGGGAAGAGTGTGTTGTTGGGGGGCTTGGTTAGGCTAGACATGGT
TGAAGGGCGTCCATTCCTCTTCACTTTTTATGTCTCGAACGATGTCAAGC
TGCACCAAACAGGAACAGATCGAGCGGACGAGTTCTTGGAGAAGCACATC
GGAGACCTTGTGTTTCCACCCTTCACGCATGAAAGGCGGGAAGAGATGGG
ACCGTGGGTAGCAAGAGATTTTGACATCGAAGGGACGGGGTGGAAAACTT
CGGCGATTGATATTGTGATCTCGGGTTTAGGGTGGATTTCAATTACGGGC
GCCTTGAATTGCAAGGTTCGTGTAATGGCGCCGGAAGCGGTGGGGGTGAG
GTTGCGTAGCCCGTTGATGCCCTACGAGACATGGGCCACAACGGCGAAGT
GGACGGGCTTACGGGCCATCAAAGGCGACAGGCAAAAGGGGGGTAGTAGA
TAAAGACACTTTAAGGAAACAAAAGTACACAATAAGGAGACCCGT
back to top

protein sequence of NO01G01880.1

>NO01G01880.1-protein ID=NO01G01880.1-protein|Name=NO01G01880.1|organism=Nannochloropsis oceanica|type=polypeptide|length=992bp
MASRARGPTYPGTLNSVTLFVLVLTMVLMRLPQTMAFQGFVRARTSAAAA
SSRASLPSFATLATRPSTRQPLQQSRLVRHVRVPTVTAARKKNDEEGRDE
AAAATSAVSPRGSKPAADDKKLGRGPRNRRHITVSAEEEEFAALSDSRAP
VLGEDGLPRGRPRIASRSMGPPKKRPAMTFDPTWTAKASGGNSGNSSSGN
KALSGSITKKKAEETNRVRPPVAAVPTAIIEDRGENDGGDEEEDEMDGEI
SDLPKGLILRALDGESYEEARRLANLSDDEGEEEDNDEDLEEEGEEEEEE
EEEEEEEEEEEEREPLPDDIVFGDDDDDDDEDELPPLPPNKVLSMEDRLR
MAETGNIFNPYVARMHTKSGPSRSQIGKGEDDLLFDELDEKEGEMEDDMS
QGDAFAFDRRPMRPVKYHYKIVMDAGTCPGCGNSFQTKNDSSPGFLPSDV
FQRMQSKMMALRKTQPVKQQPGAAPLSKSAAGARRKQQQMEAVAAALAAD
LKEGERDDGGDLYQGMTAEEEVEMLLSGKDRDEFEKDAAGKEGGRKGGKA
IIVVEEEDELDEKEEQQQEEGGREGGKKEGEEDGDDRTVICQRCHKLKHY
GEVEDSLRPGWTDNEALTPERFRELVSVVRKKRCAVVCLVDIFDFHGSLL
YNLPRIVGENPVLIVVNKADLLPTDFSEERIRIWVKQELEKVGMKEVNTR
HIHLVSCKTGANVKPLLRAMKLLARQRKRDLYVIGAANVGKSTFINRLIE
LGRSGGDQGRNAKKSKKKKQDPSKTVGASLVTTSPLPGTTLNFIEVDLGD
KVSLYDTPGLILPHQITTLLNTEELKAVIPQKRINHVTLRLKEGKSVLLG
GLVRLDMVEGRPFLFTFYVSNDVKLHQTGTDRADEFLEKHIGDLVFPPFT
HERREEMGPWVARDFDIEGTGWKTSAIDIVISGLGWISITGALNCKVRVM
APEAVGVRLRSPLMPYETWATTAKWTGLRAIKGDRQKGGSR*
back to top
Synonyms
Publications