NO01G00240, NO01G00240 (gene) Nannochloropsis oceanica

Overview
NameNO01G00240
Unique NameNO01G00240
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length974
Alignment locationchr1:39764..40737 -

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Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:39764..40737 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO01G00240 vs. NCBI_GenBank
Match: EWM27399.1 (hypothetical protein Naga_100212g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 99.8 bits (247), Expect = 1.000e-17
Identity = 79/184 (42.93%), Postives = 103/184 (55.98%), Query Frame = 0
Query:    1 MHRALSLLALGITLA---LTAAQPMLTLTSIKAVDSTSDNKDQWSMKGFLNDPDADFVSTIADEGLFVDLYNDEFDINDDDSDVSVVEFAAADCRDLSNGRGVLCKDAGARISFKKTKRVPHEAKVKAMKN-HNKT-DSASSYYSVSGVFRRQQF-ENTISNSANLTAATSTTQLGAEDTLSNC 179
            M   LSLLALGITL    +T A   L L SI+AVD +  NKD W MKG +NDP    VS I  +GL V+L +   D       ++ V FAA+DCR  ++GR   CK  GAR+S K ++R     K+K  K  H K+ +S   YYSV+G FR   F EN + +   LTAA +  +    DTL+ C
Sbjct:    1 MRSTLSLLALGITLGSTLVTTAGQDLNLKSIRAVDRSVTNKDTWKMKGSINDPSLTIVSAIGQKGLTVELQDAATD------PLNTVTFAASDCRVPAHGRRAACKIRGARVSIKTSRR----PKIKTPKTVHAKSYNSTGGYYSVTGTFRGLTFLENPVVSP--LTAALTVDESVLSDTLTLC 172          
BLAST of NO01G00240 vs. NCBI_GenBank
Match: XP_005852576.1 (hypothetical protein NGA_0721300 [Nannochloropsis gaditana CCMP526] >EKU23255.1 hypothetical protein NGA_0721300 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 97.4 bits (241), Expect = 5.000e-17
Identity = 82/192 (42.71%), Postives = 102/192 (53.12%), Query Frame = 0
Query:    1 MHRALSLLALGITLALTAAQPMLTLTSIKAVDSTSDNKDQWSMKGFLNDPDADFVSTIADEGLFVDLYNDEFDINDDDSDVSVVEFAAADCRDLSNGRGVLCKDAGARISFKKTKRVPHEAKVKAMKNHNKTDSASSYYSVSGVFRRQQFENTISNSANLTAATSTTQLGA-EDTLSNCREKGGARTTKLFC 192
            M R LSLLALG+TLALT  Q ML+L SIK  + T  NKD+WSMKG L DP    VS I   GL V L +   D  D  S      FAA DC    + +G  CK  GAR+S + +K  P +      K+HN T     Y+SVSG FRR Q +    +   LTA  +   +G    TL+ C  K G +T K+ C
Sbjct:    1 MRRGLSLLALGLTLALTTGQ-MLSLKSIKTFERTQMNKDKWSMKGHLEDPTLAVVSGIGTNGLTVTLLDMAADTLDTAS------FAAGDCMVRKSSKGARCKMMGARVSIRASK--PPKG---VGKSHNST---GGYFSVSGSFRRVQLQEDPVDFP-LTAELTVPGVGTLSQTLTGCSVK-GTKTRKVTC 175          
BLAST of NO01G00240 vs. NCBI_GenBank
Match: EWM26484.1 (Neuraminidase, partial [Nannochloropsis gaditana])

HSP 1 Score: 92.8 bits (229), Expect = 1.200e-15
Identity = 79/200 (39.50%), Postives = 103/200 (51.50%), Query Frame = 0
Query:    1 MHRALSLLALGITLALT---AAQPMLTLTSIKAVDSTSDNKDQWSMKGFLNDPDADFVSTIADEGLFVDLYNDEFDINDDDSDVSVVEFAAADCRDLSNGRGVLCKDAGARISFKKTKRVPHEAKVKAMKN-HNKT-DSASSYYSVSGVFRRQQF-ENTISNSANLTAATSTTQLGAEDTLSNCRE--KGGARTTKLFCQ 193
            M  ALSLL LG+T   T    A   L L SI+ VD +  NKD W MKG +NDP    V  I   GL V+L +   D       ++ V FAA+DCR  ++GR   CK  GAR+S K ++R     KVK  K  H K+ +S   YYSV+G FR   F EN + +   LTAA         DTL++C +  +   R T   C+
Sbjct:    1 MRSALSLLVLGVTFGSTLVPTAGQDLNLKSIRTVDRSVTNKDTWKMKGNINDPSLTIVPAIGQTGLTVELQDAATD------PLNTVAFAASDCRVPAHGRRATCKIRGARVSIKTSRR----PKVKTPKTVHAKSYNSTGGYYSVTGTFRGLTFLENPVVSP--LTAALRINGSVLSDTLTSCYDLARKSGRNTISHCE 188          
BLAST of NO01G00240 vs. NCBI_GenBank
Match: EWM26485.1 (Neuraminidase, partial [Nannochloropsis gaditana])

HSP 1 Score: 92.8 bits (229), Expect = 1.200e-15
Identity = 79/200 (39.50%), Postives = 103/200 (51.50%), Query Frame = 0
Query:    1 MHRALSLLALGITLALT---AAQPMLTLTSIKAVDSTSDNKDQWSMKGFLNDPDADFVSTIADEGLFVDLYNDEFDINDDDSDVSVVEFAAADCRDLSNGRGVLCKDAGARISFKKTKRVPHEAKVKAMKN-HNKT-DSASSYYSVSGVFRRQQF-ENTISNSANLTAATSTTQLGAEDTLSNCRE--KGGARTTKLFCQ 193
            M  ALSLL LG+T   T    A   L L SI+ VD +  NKD W MKG +NDP    V  I   GL V+L +   D       ++ V FAA+DCR  ++GR   CK  GAR+S K ++R     KVK  K  H K+ +S   YYSV+G FR   F EN + +   LTAA         DTL++C +  +   R T   C+
Sbjct:    1 MRSALSLLVLGVTFGSTLVPTAGQDLNLKSIRTVDRSVTNKDTWKMKGNINDPSLTIVPAIGQTGLTVELQDAATD------PLNTVAFAASDCRVPAHGRRATCKIRGARVSIKTSRR----PKVKTPKTVHAKSYNSTGGYYSVTGTFRGLTFLENPVVSP--LTAALRINGSVLSDTLTSCYDLARKSGRNTISHCE 188          
BLAST of NO01G00240 vs. NCBI_GenBank
Match: EWM20775.1 (hypothetical protein Naga_100549g2 [Nannochloropsis gaditana])

HSP 1 Score: 88.2 bits (217), Expect = 3.000e-14
Identity = 78/200 (39.00%), Postives = 102/200 (51.00%), Query Frame = 0
Query:    1 MHRALSLLALGITLA---LTAAQPMLTLTSIKAVDSTSDNKDQWSMKGFLNDPDADFVSTIADEGLFVDLYNDEFDINDDDSD-VSVVEFAAADCRDLSNGRGVLCKDAGARISFKKTKRVPHEAKVKAMKN-HNKT-DSASSYYSVSGVFRRQQFENTISNSANLTAATSTTQLGAEDTLSNCRE--KGGARTTKLFCQ 193
            M  A S LA+GIT     +T A   L L SI+AVD +  NKD W MKG ++DP    V  IA  GL V+L        D  SD ++ V FAA+DCR  +NGR   CK  GAR+S K ++R     K+K  K  H KT +S   YY V+G  R   F   +  S  LTA  +       DTL++C +  +   R T   C+
Sbjct:    1 MRSAFSFLAVGITFGSSLVTTAGQDLNLKSIRAVDRSVANKDTWKMKGKIDDPSMTIVPEIAQTGLIVEL-------QDGGSDPLNTVTFAASDCRVPTNGRRATCKIRGARVSIKSSRR----PKLKTPKTVHAKTYNSTGGYYRVTGACRGLTFLEDLVLSP-LTAKLTVNGDVLSDTLTSCYDLPRMNGRNTITHCE 188          
The following BLAST results are available for this feature:
BLAST of NO01G00240 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 15
Match NameE-valueIdentityDescription
EWM27399.11.000e-1742.93hypothetical protein Naga_100212g1, partial [Nanno... [more]
XP_005852576.15.000e-1742.71hypothetical protein NGA_0721300 [Nannochloropsis ... [more]
EWM26484.11.200e-1539.50Neuraminidase, partial [Nannochloropsis gaditana][more]
EWM26485.11.200e-1539.50Neuraminidase, partial [Nannochloropsis gaditana][more]
EWM20775.13.000e-1439.00hypothetical protein Naga_100549g2 [Nannochloropsi... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL007nonsL007Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR042ncniR042Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G00240.1NO01G00240.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G00240.1NO01G00240.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G00240 ID=NO01G00240|Name=NO01G00240|organism=Nannochloropsis oceanica|type=gene|length=974bp
ATGCATCGCGCCCTTTCTCTGCTTGCCCTCGGCATCACCCTCGCCCTGAC
GGCGGCTCAGCCGATGTTGACCCTCACCTCCATTAAGGCAGTCGACTCGA
CTAGCGACAACAAGGATCAATGGAGCATGAAGGGCTTCCTCAACGATCCT
GATGCCGATTTCGTCTCTACCATCGCCGATGAGGGCTTGTTTGTAGACTT
GTACAACGATGAGTTTGACATCAATGATGACGACAGTGACGTGAGTGTGG
TGGAATTTGCCGCGGCTGATTGTAGAGACCTCAGCAACGGCAGGGGAGTC
CTTTGCAAGGATGCGGGCGCCCGTATCTCGTTCAAGAAGACGAAGAGGGT
ACCGCATGAGGCCAAGGTGAAGGCGATGAAGAACCACAACAAGACGGACA
GCGCTTCTTCCTACTACAGTGTGTCGGGTGTTTTCCGCCGTCAGCAATTC
GAGAACACTATCTCTAACTCAGCGAATCTGACAGCTGCTACTTCTACTAC
CCAGCTAGGTGCTGAAGACACACTCTCTAACTGCAGGGAGAAGGGGGGTG
CCAGGACCACCAAGCTCTTCTGCCAGTAAATGCCATCGCATTGAGGTCGG
GCCTGCACTCGGCGCTCGACTCACCGGCAAGAGACCCTCCACGTCCTGCC
TCTTGTATATCTATGTGTGACTGTGTCTTGTATGCCCGCTCAGGTTGGAA
GCCCTCCAGTTTCCGTTCCTGACGCGTCGGTTTGTCCATGTGCGTAAACA
GTGTTCTTGTTTGATGTGTTGTGCATGTGTTGTGCTGTGTATGTGTCCCA
TCTCCTCTCTCGAGCCCTTCTCGTGTTGTATGCTTGTATTCCCCGGACGG
CCCCAGAGAGCCAAGTCTCGGAGTTTGATCTTTGGTGCCTGAAGTTCAAC
TCTGTCAATATTCCAAAAGAAGGACAGGCCTTTCGCAGGCGATTATTTGC
GAAATAAAATCTGCTTATAAAATG
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protein sequence of NO01G00240.1

>NO01G00240.1-protein ID=NO01G00240.1-protein|Name=NO01G00240.1|organism=Nannochloropsis oceanica|type=polypeptide|length=193bp
MHRALSLLALGITLALTAAQPMLTLTSIKAVDSTSDNKDQWSMKGFLNDP
DADFVSTIADEGLFVDLYNDEFDINDDDSDVSVVEFAAADCRDLSNGRGV
LCKDAGARISFKKTKRVPHEAKVKAMKNHNKTDSASSYYSVSGVFRRQQF
ENTISNSANLTAATSTTQLGAEDTLSNCREKGGARTTKLFCQ*
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Synonyms
Publications