NO08G03250, NO08G03250 (gene) Nannochloropsis oceanica

Overview
NameNO08G03250
Unique NameNO08G03250
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3213
Alignment locationchr8:891895..895107 -

Link to JBrowse

Properties
Property NameValue
DescriptionDeubiquitinating enzyme
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:891895..895107 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO08G03250 vs. NCBI_GenBank
Match: EWM26808.1 (deubiquitinating enzyme [Nannochloropsis gaditana])

HSP 1 Score: 888.3 bits (2294), Expect = 2.400e-254
Identity = 549/1125 (48.80%), Postives = 667/1125 (59.29%), Query Frame = 0 
Query:    1 MLELTKNLAIRYLCLEALVTANAAGAARLYCATAEELLKHTMAMPGPPPL--------------LEEGEGVREESLAILCRREVAAYSQEAGWAGLVTKLQAFVPWKLEKGRLRSDDEYRTSAVLAAAQQDVAGAWNAAMVAAEGWHVDKEEMGLAHVEYWFRGPLKEGWVRFGAAGAMEAIARFESVALGKKANNSSVVTGE-----PNLPASSSLLGS---PGSAGALLIASEARAQKVLPRLAALWEGVDGRALPLLELLGRIMVEVAAXXXXXXXXXXXXXXXXXXXSKRLKDHAQLLRRLVRVPGLVPLLDYKALTGNTHPFLFPS---SQHCETEVETAAIGGGXXXXXXGQVLQTAYHELVRVVRRDNVGALGKLAPRILLPGTAFPLSASTINRAYADALLRGLDPLLAEEENSLPLARATPPERFAHRLFLAEPYLERMTPTDLIGLVEGLCVPRRQK---GEGASAVAAGYGGGVLVAVGPCLPSVVDRLAVVHK-AXXXXXXXXXXXXXXXXXXAF--LHQVTGLLEALMLCGGEKSSDGRALESAWVQGADVTSLLESMLVEGRGGGWVGIEALIASLKTAXXXXXXXXXXXSLYSCIILPVEGAVGVLVAAVKHLLSAPLPFSKLHLKKLEALLRASVATSNS------SSSGDEGVEARWALVLPLLLEFVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGVRADVIEMVLGLGRDLGMEGGGEAMLEYHRAAEMMWEGLGRKLSREEASTVEGRVQALLNALEGDKALEKTGAETALALVRMWGGGILAGGGPLGLNIDWSRWVVGEEEEGKG-----------AAATSAPEYDVIYRRLTERALEGRKWNGAASLLLWSPWRYRVRTTGTLNKEEEEEALVAKLDILGAPFGLKLKVMLSSPHASLRAEAVAALPXXXXXXXXXXXXXXXXXXXXXVHCTSIVTLPR-TFSPPILASDXXXXXXXXXXXXXXXXAQDPLPFLVSPAWRVLADALLLLPSHPKASQPLPLPASVAFVAARLVAGRAYLQAGALLAEDRQLHPALRTVEGVMSVLWTTLFSRTYYY-GEQA-----EDEDEGQQGRRDEKLWLHVRDAAKVVLEADETD 1071
            MLE  ++LAIRYLCLEALV  N   +   YCA+A ELLKH MA                     L     V  ESLA LCRRE+AAYSQEA   G++T LQAFVPW L+  ++R D EYRT AV AAA+QD A AW AAM+AAE W V+K E+ LAH+E+WF+GPLKE W +F AAG  E I+RFE VALGK+ +N S   G        +    S LGS   P SAGA LIAS   A+  + RLA +W+ +DG+A+ LLE+L RIM E+                      KRL+DH QLLRRL+R+P L   L+YK LT +T P+L       +      +TA             ++Q +Y ELV  VRRDNV AL KLA RILLP    PLSAST+NRAYA+ALLRGLDPLL++EE +LPLARA+  ERF+HR F+AEPYL+R+  +DLIGL+E +C+PR +     E             L++   CL SV DR  V  K A                   F  + ++  LLEAL LCGG+ S D RALE+AW++G DV+ +LESMLVEGRGGGW G++ L+ +LK A                 +LP + A+GVLV AVKHLL APLPF K HL  LE +L  SVA S +      +   D G +ARWAL+ P+L EFV                                 RADV+E+VL LG    +EGG EAM+ YHRAAEMMWEGLGRKLSR EA TV+GRVQALL A+EG K LEK GAETALALVR+W G +  G GPLGL +DWSRWV+   E+G                T+ PEYDVIYRRLTERAL+  KWNGA+SLLLWSPWRYR    G    + EEE L AKL  L AP  L+LKV LSSPHA+LRAEAVA LP                         S+   PR   S  +L +D                 +DPL  L S AW+++ADALL LP  PKAS+  PLPASVAFVAARLV GRA+L AGAL+A+ ++LHPALRTVEGV+S+LWTTL S TY+  GE       +  +  Q  + D KLW  VR+AAK VLE DETD
Sbjct: 1008 MLEAIRSLAIRYLCLEALVERNGTVSTPFYCASAGELLKHAMAXXXXXXXXXXXXXXXXXXXXSLHSETEVLGESLAQLCRRELAAYSQEAERTGVLTTLQAFVPWTLDGVKVRIDQEYRTEAVFAAARQDDAQAWKAAMMAAEAWGVEKGEVALAHLEFWFQGPLKEAWSKFRAAGLGEVISRFEKVALGKRGSNGSEKQGSGTRAGAEIEQDLSALGSQWDPRSAGAQLIASTPEARHAVSRLAVVWDALDGQAMSLLEVLSRIMAEITT---VAEKEAGEHGESFVGIGKRLRDHVQLLRRLMRIPNLPSTLNYKRLTASTPPYLTACVLLKRKDSDSEDTAQKASLAPAPTRDWLIQESYRELVHNVRRDNVTALSKLAARILLP--CGPLSASTVNRAYAEALLRGLDPLLSDEEANLPLARASAEERFSHRAFVAEPYLDRLASSDLIGLLESVCMPRLEASRLAEREMRATPNEKASPLLSAXXCLSSVSDRSLVSQKIAILYQSSKGKGGDTHVKSDDFECIQRIIALLEALTLCGGDASEDSRALETAWIEGTDVSPVLESMLVEGRGGGWAGLQTLMRALKRAAASPPTSSPSFRGGKGFLLPQDEALGVLVGAVKHLLGAPLPFDKAHLVNLERILTDSVAASRTHDMSLDNEEEDAGAQARWALIRPILEEFV-AQDGAEEEGEGGQDGSTARALSPVQQGHQDRARADVVEIVLRLGTGFSLEGGNEAMVVYHRAAEMMWEGLGRKLSRREAETVDGRVQALLAAMEGPKGLEKAGAETALALVRLWSGSVAKGSGPLGLAVDWSRWVLDTREDGDADKTLPGEEAACDCETTLPEYDVIYRRLTERALDAHKWNGASSLLLWSPWRYR----GGDGGDREEEELAAKLGDLQAPLALRLKVALSSPHAALRAEAVAGLPALLGDKATNSEEEATGGVPPV--SGSVHATPRPCLSSRVLVADETLLALIVCALFPPRPVKDPLTLLFSSAWQLVADALLFLPHSPKASRVPPLPASVAFVAARLVIGRAHLHAGALVADAQKLHPALRTVEGVLSLLWTTLCSGTYHIRGETGGTLSDKGHERDQLRQSDIKLWSQVREAAKKVLEQDETD 2120
The following BLAST results are available for this feature:
BLAST of NO08G03250 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26808.12.400e-25448.80deubiquitinating enzyme [Nannochloropsis gaditana][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008696NSK008696Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G03250.1NO08G03250.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|669588gene_3654Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100018g9gene3745Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G03250.1NO08G03250.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G03250 ID=NO08G03250|Name=NO08G03250|organism=Nannochloropsis oceanica|type=gene|length=3213bp
ATGCTGGAATTGACCAAGAATCTGGCCATACGTTATTTGTGTTTGGAGGC
CTTGGTGACGGCAAATGCGGCAGGTGCTGCCCGCCTCTATTGTGCAACGG
CTGAGGAACTGCTTAAGCACACAATGGCTATGCCCGGGCCCCCTCCTTTG
CTTGAGGAGGGGGAGGGAGTGAGGGAGGAGAGCCTGGCCATCCTTTGTAG
ACGGGAGGTAGCGGCCTATTCCCAAGAGGCGGGCTGGGCCGGGTTGGTCA
CCAAATTACAAGCATTCGTCCCTTGGAAATTGGAAAAAGGGCGCCTGCGA
TCTGATGATGAGTATCGGACTTCGGCTGTGTTGGCGGCTGCGCAGCAGGA
TGTTGCCGGGGCCTGGAATGCCGCGATGGTGGCAGCGGAGGGGTGGCATG
TCGACAAGGAGGAGATGGGGCTGGCACATGTCGAGTATTGGTTCCGGGGG
CCTTTGAAGGAAGGATGGGTGAGATTCGGTGCTGCGGGGGCGATGGAGGC
GATTGCTCGGTTTGAGAGCGTTGCATTGGGCAAGAAAGCCAACAACAGTT
CCGTGGTAACAGGAGAGCCAAACTTGCCTGCTTCTTCCTCTTTGTTAGGT
TCTCCGGGGAGTGCCGGTGCTCTTTTGATTGCTTCCGAGGCAAGGGCTCA
GAAAGTGTTGCCGCGTTTGGCTGCCTTGTGGGAGGGAGTCGACGGACGGG
CCCTGCCTTTGCTAGAGCTCTTGGGTCGGATTATGGTAGAAGTAGCAGCC
ATGGCCGAGGAAGGAAGGGAGGGGGGCCAAGGAGGAGGAGGAGGAGGAGG
AGGGGTGTCGAAGCGGTTGAAAGATCATGCGCAGTTGCTTCGGAGGCTCG
TGCGGGTGCCAGGCTTGGTGCCCCTGTTGGATTACAAGGCTTTGACTGGA
AACACGCACCCCTTTCTCTTTCCATCATCGCAGCATTGCGAAACAGAAGT
CGAAACAGCAGCAATAGGAGGAGGAGCAGGAGGAGCAGGAGCAGGGCAAG
TGCTCCAAACTGCCTACCACGAACTCGTCCGCGTCGTGCGTCGAGACAAT
GTTGGTGCGCTGGGGAAGCTCGCCCCTCGCATCCTCCTGCCTGGCACTGC
GTTCCCTCTCTCCGCTTCGACCATCAATCGCGCCTATGCAGATGCCCTCC
TTCGAGGCCTTGATCCCCTCCTTGCCGAAGAAGAGAATAGTCTCCCCCTG
GCACGTGCAACGCCACCAGAGAGATTCGCACATCGCTTATTTCTTGCGGA
ACCGTATCTTGAAAGGATGACGCCCACGGATCTGATTGGCTTGGTGGAGG
GGTTGTGTGTGCCACGGCGGCAGAAAGGAGAAGGAGCATCAGCAGTGGCA
GCAGGATACGGTGGGGGGGTGCTCGTGGCAGTGGGACCATGTTTGCCTTC
TGTGGTGGATCGTTTGGCGGTTGTGCACAAGGCAGCTTCTTTACTCCAGC
AAGGGAAGAGCAGTAGCAGCAGCAGCAGTGCAGCTGAGGCATTTTTGCAC
CAGGTGACGGGCCTGTTGGAGGCTCTAATGCTGTGTGGCGGGGAGAAAAG
TTCGGATGGTCGTGCACTTGAGAGTGCTTGGGTTCAAGGGGCGGACGTGA
CTTCCCTCCTAGAATCTATGCTGGTGGAAGGACGAGGGGGAGGATGGGTC
GGAATTGAGGCATTGATAGCATCCCTTAAGACCGCTACAACAACAGCAGC
TACGACCGCTGGTTCGTCCTCTTTGTATTCCTGCATTATTCTTCCTGTGG
AGGGAGCGGTGGGCGTTCTAGTGGCTGCGGTAAAGCACTTACTTTCGGCA
CCTCTACCATTCTCGAAATTGCACTTGAAGAAGCTGGAGGCATTGCTCCG
GGCGAGCGTAGCAACGTCCAACAGCAGTAGCAGTGGTGATGAAGGAGTGG
AAGCAAGGTGGGCCCTTGTGTTGCCTCTTTTACTAGAGTTTGTGACAAAG
GAAGAGGAGGAGGAGGGGGGAGGGTCGGAGGAAAGGGGAGAGGGAGTAAG
TGCACCAACTGCTGCTGCTGCCCAAAGTCGTCGTGGCGGGGTACGGGCAG
ATGTGATCGAGATGGTGTTAGGGCTAGGGAGGGATCTAGGGATGGAGGGT
GGGGGAGAGGCAATGCTCGAATATCATCGAGCAGCTGAAATGATGTGGGA
GGGGTTGGGCAGGAAGCTATCGAGGGAGGAAGCAAGTACTGTGGAAGGGA
GGGTTCAGGCGCTATTAAATGCACTGGAGGGAGATAAGGCCTTGGAGAAA
ACGGGGGCGGAGACAGCGCTGGCTTTGGTGAGGATGTGGGGGGGAGGGAT
TCTGGCGGGTGGTGGCCCGTTGGGATTGAATATTGACTGGTCACGCTGGG
TGGTGGGGGAGGAAGAGGAAGGGAAAGGAGCAGCAGCAACTAGCGCCCCG
GAATACGATGTTATTTACCGAAGGCTGACGGAACGAGCACTGGAAGGAAG
GAAATGGAATGGCGCAGCGTCATTGTTACTGTGGAGTCCGTGGCGGTATC
GGGTAAGGACCACGGGAACATTGAACAAGGAGGAAGAGGAGGAGGCGTTG
GTGGCCAAGCTTGATATCTTGGGCGCGCCCTTTGGTTTGAAACTCAAAGT
GATGCTGTCTTCTCCTCACGCGTCTTTACGGGCTGAAGCAGTAGCCGCCT
TACCTGCCTTGTTGGGTGGTGATGGTGGTAGTGGTGAAGAAGGGGGAGAT
GGAGCTGCAGGGAGGGCCGTACATTGCACATCCATTGTCACCCTCCCACG
CACCTTTTCTCCACCCATATTGGCTTCGGATGAGATTCTGCTAGCACTCA
TTACAGCTGCGTTTTTTCCGCCACCCCCCGCGCAAGACCCGCTGCCCTTC
CTTGTCTCTCCTGCTTGGCGTGTCCTTGCCGATGCATTGCTCCTTCTCCC
CTCCCACCCCAAGGCCTCGCAACCCCTTCCCTTGCCTGCCAGTGTGGCAT
TTGTGGCAGCGCGATTGGTGGCGGGAAGAGCATATTTGCAGGCGGGAGCG
CTGTTAGCCGAGGACCGGCAGCTGCACCCGGCATTGAGAACAGTAGAAGG
TGTCATGTCCGTGCTCTGGACAACGTTGTTTTCTCGGACGTACTACTATG
GGGAGCAGGCTGAAGACGAGGACGAGGGGCAGCAAGGTCGGAGGGACGAA
AAGCTGTGGTTGCACGTCCGCGATGCGGCCAAGGTCGTGTTGGAAGCGGA
TGAGACGGATTGA
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protein sequence of NO08G03250.1

>NO08G03250.1-protein ID=NO08G03250.1-protein|Name=NO08G03250.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1071bp
MLELTKNLAIRYLCLEALVTANAAGAARLYCATAEELLKHTMAMPGPPPL
LEEGEGVREESLAILCRREVAAYSQEAGWAGLVTKLQAFVPWKLEKGRLR
SDDEYRTSAVLAAAQQDVAGAWNAAMVAAEGWHVDKEEMGLAHVEYWFRG
PLKEGWVRFGAAGAMEAIARFESVALGKKANNSSVVTGEPNLPASSSLLG
SPGSAGALLIASEARAQKVLPRLAALWEGVDGRALPLLELLGRIMVEVAA
MAEEGREGGQGGGGGGGGVSKRLKDHAQLLRRLVRVPGLVPLLDYKALTG
NTHPFLFPSSQHCETEVETAAIGGGAGGAGAGQVLQTAYHELVRVVRRDN
VGALGKLAPRILLPGTAFPLSASTINRAYADALLRGLDPLLAEEENSLPL
ARATPPERFAHRLFLAEPYLERMTPTDLIGLVEGLCVPRRQKGEGASAVA
AGYGGGVLVAVGPCLPSVVDRLAVVHKAASLLQQGKSSSSSSSAAEAFLH
QVTGLLEALMLCGGEKSSDGRALESAWVQGADVTSLLESMLVEGRGGGWV
GIEALIASLKTATTTAATTAGSSSLYSCIILPVEGAVGVLVAAVKHLLSA
PLPFSKLHLKKLEALLRASVATSNSSSSGDEGVEARWALVLPLLLEFVTK
EEEEEGGGSEERGEGVSAPTAAAAQSRRGGVRADVIEMVLGLGRDLGMEG
GGEAMLEYHRAAEMMWEGLGRKLSREEASTVEGRVQALLNALEGDKALEK
TGAETALALVRMWGGGILAGGGPLGLNIDWSRWVVGEEEEGKGAAATSAP
EYDVIYRRLTERALEGRKWNGAASLLLWSPWRYRVRTTGTLNKEEEEEAL
VAKLDILGAPFGLKLKVMLSSPHASLRAEAVAALPALLGGDGGSGEEGGD
GAAGRAVHCTSIVTLPRTFSPPILASDEILLALITAAFFPPPPAQDPLPF
LVSPAWRVLADALLLLPSHPKASQPLPLPASVAFVAARLVAGRAYLQAGA
LLAEDRQLHPALRTVEGVMSVLWTTLFSRTYYYGEQAEDEDEGQQGRRDE
KLWLHVRDAAKVVLEADETD*
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Synonyms
Publications