NO23G01310, NO23G01310 (gene) Nannochloropsis oceanica

Overview
NameNO23G01310
Unique NameNO23G01310
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3622
Alignment locationchr23:472603..476224 +

Link to JBrowse

Properties
Property NameValue
DescriptiontRNA-dihydrouridine(20/20a) synthase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr23genomechr23:472603..476224 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0002943tRNA dihydrouridine synthesis
GO:0008033tRNA processing
GO:0055114oxidation-reduction process
GO:0008152metabolic process
GO:0055114oxidation-reduction process
GO:0008033tRNA processing
GO:0002943tRNA dihydrouridine synthesis
Vocabulary: Molecular Function
TermDefinition
GO:0050660flavin adenine dinucleotide binding
GO:0017150tRNA dihydrouridine synthase activity
GO:0050660flavin adenine dinucleotide binding
GO:0017150tRNA dihydrouridine synthase activity
GO:0003824catalytic activity
Vocabulary: INTERPRO
TermDefinition
IPR004653DusA
IPR001269tRNA_hU_synthase
Homology
[Close]
BLAST of NO23G01310 vs. NCBI_GenBank
Match: XP_009822874.1 (hypothetical protein H257_01396 [Aphanomyces astaci] >ETV88011.1 hypothetical protein H257_01396 [Aphanomyces astaci])

HSP 1 Score: 327.0 bits (837), Expect = 9.100e-86
Identity = 183/374 (48.93%), Postives = 237/374 (63.37%), Query Frame = 0 
Query:   83 PYTLSIAPMMEWTDRHYRYMMRGLTQHTQLYTEMIVDGTLLHRRDDLSLFLGHDECEQPLAVQLGGSSPTDVGEAAAICEAYGGFNEINLNVGCPSPRVATKACFGARLMLDPDKTRQILHEMTRRVTHTNVTVKCRIGADEKDSYDDLLSFIQTVRPSLPPSLPPTFILHARKALLSG--LSPAQNRSVPPLNYPRVHSLVTAFPDCYFIINGGIQTWQDAQAHLSEEESAAAGWGPPVAGVMIGRAAYHHPWLFRNADTLFFGAGRDGGRSRREVVERYLDYAEKMVLLHKDKFNGGCTPG-------ALVKPLLNLFAGEPGGKIFRRRLSEGQASRKKEGWDINGDGGASAFVELVSLAMEDSLGSDMLD 448
            P  LS+APMM+WTDRHYRYMMR +T+ T LYTEM+VD TL+H++ +L  FLGHD  E PLA+QLGGS+P  +GE A + E+YG F+EIN+NVGCPSP+V +K CFGARLMLDP   R I HEM R+VT T +TVKCR+G D+ DSY+ L  F+ TV+ S        F +HARK  L G  LSP +NR+VP LNY  V  L   FP    ++NGG+ + Q A   L +           V G+MIGRAAY+ PW FR+AD L FG   + G SRR+VV  YLDYA+ M    + K+     PG        L+KPLLNLF GE GGK  +R +++  A R+ E  ++          +LV  AME+ + + +LD
Sbjct:   11 PARLSVAPMMDWTDRHYRYMMRLITRRTLLYTEMVVDATLMHQKHNLDYFLGHDSLEHPLALQLGGSNPAMLGEVAKMAESYGSFHEININVGCPSPKV-SKNCFGARLMLDPAHVRDICHEMRRQVTSTPITVKCRLGVDDFDSYEYLHEFVATVQTSGVTE----FTVHARKCWLDGLRLSPHENRTVPALNYDFVGRLKADFPHLRIMLNGGVSSIQHAHELLQDPSL-------QVDGIMIGRAAYNTPWNFRDADRLHFGV-PNPGLSRRQVVAAYLDYADDM----QAKWGSVRKPGQYAMPTSLLMKPLLNLFNGEFGGKAVKRHVAQRWADRQGEQLELR---------DLVETAMEECIPAAVLD 358
[Close]
BLAST of NO23G01310 vs. NCBI_GenBank
Match: XP_008870144.1 (hypothetical protein H310_06752 [Aphanomyces invadans] >ETW01146.1 hypothetical protein H310_06752 [Aphanomyces invadans])

HSP 1 Score: 322.8 bits (826), Expect = 1.700e-84
Identity = 178/370 (48.11%), Postives = 232/370 (62.70%), Query Frame = 0 
Query:   83 PYTLSIAPMMEWTDRHYRYMMRGLTQHTQLYTEMIVDGTLLHRRDDLSLFLGHDECEQPLAVQLGGSSPTDVGEAAAICEAYGGFNEINLNVGCPSPRVATKACFGARLMLDPDKTRQILHEMTRRVTHTNVTVKCRIGADEKDSYDDLLSFIQTVRPSLPPSLPPTFILHARKALLSG--LSPAQNRSVPPLNYPRVHSLVTAFPDCYFIINGGIQTWQDAQAHLSEEESAAAGWGPPVAGVMIGRAAYHHPWLFRNADTLFFGAGRDGGRSRREVVERYLDYAEKMVLLHKDKFNGG---CTPGALVKPLLNLFAGEPGGKIFRRRLSEGQASRKKEGWDINGDGGASAFVELVSLAMEDSLGSDMLD 448
            P  LS+APMM+WTDRHYRYMMR +T+ T LYTEM+VD T++H++ +L  FLGHD  E PLA+Q+GGS+P  +GE A + E+YG F+EIN+NVGCPSP+V ++ CFGARLML+P   R I +EM R+VT T +TVKCR+G D+ DSY+ L  F+ TV  S        F +HARK  L G  LSP +NR+VPPLNY  V  L + FP    ++NGG+ + Q A   L +           V GVMIGRAAY+ PW FR+AD L FG   + G SRR+V+  YLDYAE M          G        L+KPLLNLF GE GGK  +R +++  A R  E  D+          +L+  AME  + + +LD
Sbjct:   11 PTRLSVAPMMDWTDRHYRYMMRLITRRTLLYTEMVVDETIMHQKHNLDYFLGHDAVEYPLALQVGGSNPETLGEVAKMAESYGRFHEININVGCPSPKV-SRGCFGARLMLNPSLVRDICYEMRRQVTSTPITVKCRLGVDDFDSYEYLHEFVSTVEKSGVTE----FTVHARKCWLDGLRLSPHENRTVPPLNYDFVGRLKSDFPHLRIMLNGGVASIQHAHELLQDSSL-------NVDGVMIGRAAYNTPWNFRDADRLHFGV-PNPGLSRRQVIANYLDYAEDMQAKWGTVRQSGQYAMPTSLLMKPLLNLFNGEYGGKAMKRHVAQRWADRNGEALDLR---------DLIETAMEACVPAAVLD 358
[Close]
BLAST of NO23G01310 vs. NCBI_GenBank
Match: CCA16675.1 (tRNAdihydrouridine synthase putative [Albugo laibachii Nc14])

HSP 1 Score: 318.5 bits (815), Expect = 3.200e-83
Identity = 167/334 (50.00%), Postives = 219/334 (65.57%), Query Frame = 0 
Query:   92 MEWTDRHYRYMMRGLTQHTQLYTEMIVDGTLLHRRDDLSLFLGHDECEQPLAVQLGGSSPTDVGEAAAICEAYGGFNEINLNVGCPSPRVATKACFGARLMLDPDKTRQILHEM--TRRVTHTNVTVKCRIGADEKDSYDDLLSFIQTVRPSLPPSLPPTFILHARKALLSGLSPAQNRSVPPLNYPRVHSLVTAFPDCYFIINGGIQTWQDAQAHLSEEESAAAGWGPPVAGVMIGRAAYHHPWLFRNADTLFFGAGRDGGRSRREVVERYLDYAEKM-------VLLHKDKFNGGCTPGALVKPLLNLFAGEPGGKIFRRRLSEGQASRKKE 417
            M+WTDRHYRY+MR +T HTQLYTEM+VD TLL+++D+L  FLGHD+ E PLAVQLGG+S   +  AA +C  YGGFNEINLN GCPSP+V +K CFGA+LML P++ R I   M          +TVKCRIG D+ DSY++L  FI  V  S        FI+HARK  LSGL+P +NR++P LNY  V+ L + FP+  F +NGG+ + ++A   L             + G+MIGRAAY +PW FRNAD L +GA R+   SRRE++ERY+DYAE +        +L   KF    T   LVKPLL+LF+GE GGK+F+R++ E     K++
Sbjct:  218 MDWTDRHYRYLMRLITHHTQLYTEMLVDQTLLYQKDNLHYFLGHDDDESPLAVQLGGNSIDTLAAAAQLCREYGGFNEINLNCGCPSPKV-SKQCFGAQLMLQPERVRDICAGMIGANSSMDPEITVKCRIGVDDCDSYEELKRFISVVSASGVEH----FIVHARKCWLSGLNPHENRTIPTLNYDFVYQLKSDFPNLAFTLNGGVASIEEAHRLLQTSN---------MDGIMIGRAAYKYPWNFRNADRLLYGAKRNPNLSRREIIERYIDYAEDLQERWGSDKILDNSKFAMPTT--TLVKPLLSLFSGEHGGKVFKRKIGEFWCINKED 535
[Close]
BLAST of NO23G01310 vs. NCBI_GenBank
Match: XP_012203484.1 (hypothetical protein SPRG_08867 [Saprolegnia parasitica CBS 223.65] >KDO25926.1 hypothetical protein SPRG_08867 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 318.5 bits (815), Expect = 3.200e-83
Identity = 176/376 (46.81%), Postives = 232/376 (61.70%), Query Frame = 0 
Query:   83 PYTLSIAPMMEWTDRHYRYMMRGLTQHTQLYTEMIVDGTLLHRRDDLSLFLGHDECEQPLAVQLGGSSPTDVGEAAAICEAYGGFNEINLNVGCPSPRVATKACFGARLMLDPDKTRQILHEMTRRVTHTNVTVKCRIGADEKDSYDDLLSFIQTVRPSLPPSLPPTFILHARKALLSG--LSPAQNRSVPPLNYPRVHSLVTAFPDCYFIINGGIQTWQDAQAHLSEEESAAAGWGPPVAGVMIGRAAYHHPWLFRNADTLFFGAGRDGGRSRREVVERYLDYAEKMVLL----HKDKFNGGCTPGALVKPLLNLFAGEPGGKIFRRRLSEGQASRKKEGWDINGDGGASAFVELVSLAMEDSLGSDMLDDVGLD 453
            P  LS+APMM+WTDRHYR+MMR +T+ T LYTEM+VD TLLH++D+L  FLGHD  E PLA+QLGG+    +G  A + E YG F+EINLNVGCPSP+V+++ CFGARLML+P+  R I +EM R+V  T +TVKCRIG D+ DSY+   SF+ TV  S        F +HARK  L G  LSP +NR++P LNY  V  L + FP    ++NGGI + QDA A L +           + GVMIGRAAY++PW FR+AD L F    + G SRRE++  YLDYAE+M        ++          L+KP+LNLF GE GGK  +R ++          W   G+       +LV  A+E+ + S +LD    D
Sbjct:    7 PTRLSVAPMMDWTDRHYRFMMRQITRKTLLYTEMVVDQTLLHQKDNLDYFLGHDNIEHPLALQLGGNDVESLGTVARMAETYGNFHEINLNVGCPSPKVSSQ-CFGARLMLNPELVRDICYEMIRQVASTPITVKCRIGVDDLDSYEHFHSFVSTVAASGVTD----FTVHARKCWLDGLKLSPHENRTIPSLNYDYVGRLKSDFPHLNIMLNGGIGSIQDAHALLQDTNL-------NLDGVMIGRAAYNNPWNFRDADRLLFDC-ENPGFSRREIIATYLDYAEEMQATWGKRRREVGEYAMPTSTLLKPILNLFLGEYGGKAMKRHIA--------NRWSAKGE--QPELRDLVETAIEECIPSAVLDATAKD 359
[Close]
BLAST of NO23G01310 vs. NCBI_GenBank
Match: XP_008617984.1 (hypothetical protein SDRG_13663 [Saprolegnia diclina VS20] >EQC28587.1 hypothetical protein SDRG_13663 [Saprolegnia diclina VS20])

HSP 1 Score: 317.8 bits (813), Expect = 5.500e-83
Identity = 174/376 (46.28%), Postives = 233/376 (61.97%), Query Frame = 0 
Query:   83 PYTLSIAPMMEWTDRHYRYMMRGLTQHTQLYTEMIVDGTLLHRRDDLSLFLGHDECEQPLAVQLGGSSPTDVGEAAAICEAYGGFNEINLNVGCPSPRVATKACFGARLMLDPDKTRQILHEMTRRVTHTNVTVKCRIGADEKDSYDDLLSFIQTVRPSLPPSLPPTFILHARKALLSG--LSPAQNRSVPPLNYPRVHSLVTAFPDCYFIINGGIQTWQDAQAHLSEEESAAAGWGPPVAGVMIGRAAYHHPWLFRNADTLFFGAGRDGGRSRREVVERYLDYAE----KMVLLHKDKFNGGCTPGALVKPLLNLFAGEPGGKIFRRRLSEGQASRKKEGWDINGDGGASAFVELVSLAMEDSLGSDMLDDVGLD 453
            P  LS+APMM+WTDRHYR+MMR +T+ T LYTEM+VD TLLH++D+L  FLGHD+ E PLA+QLGG+    +G  A + E YG F+EINLNVGCPSP+V+++ CFGARLML+P+  R + +EM R+V  T +TVKCRIG D+ DSY+   SF+ TV  S        F +HARK  L G  LSP +NR++P LNY  V  L + FP    ++NGG+ + QDA A L +           + GVMIGRAAY++PW FR+AD L F    + G SRRE++  YLDYAE    K     ++          L+KP+LNLF GE GGK  +R ++          W + G+       +LV  A+E+ + S +LD    D
Sbjct:   12 PTRLSVAPMMDWTDRHYRFMMRQITRKTLLYTEMVVDQTLLHQKDNLDYFLGHDDIEHPLALQLGGNDVKSLGTVARMAETYGNFHEINLNVGCPSPKVSSQ-CFGARLMLNPELVRDLCYEMIRQVASTPITVKCRIGVDDLDSYEHFHSFVSTVAASGVTD----FTVHARKCWLDGLKLSPHENRTIPALNYSYVGRLKSDFPHLNIMLNGGVGSIQDAHALLQDLN---------LDGVMIGRAAYNNPWNFRDADRLLFDC-ENPGFSRREIIATYLDYAEDLQAKWGKKRREVGEYAMPTSTLLKPILNLFLGEFGGKAMKRHIA--------NRWSVKGE--QPELRDLVETALEECIPSAVLDATAKD 362
[Close]
BLAST of NO23G01310 vs. NCBI_GenBank
Match: OQR97057.1 (tRNA-dihydrouridine synthase [Achlya hypogyna])

HSP 1 Score: 313.2 bits (801), Expect = 1.400e-81
Identity = 173/376 (46.01%), Postives = 233/376 (61.97%), Query Frame = 0 
Query:   83 PYTLSIAPMMEWTDRHYRYMMRGLTQHTQLYTEMIVDGTLLHRRDDLSLFLGHDECEQPLAVQLGGSSPTDVGEAAAICEAYGGFNEINLNVGCPSPRVATKACFGARLMLDPDKTRQILHEMTRRVTHTNVTVKCRIGADEKDSYDDLLSFIQTVRPSLPPSLPPTFILHARKALLSG--LSPAQNRSVPPLNYPRVHSLVTAFPDCYFIINGGIQTWQDAQAHLSEEESAAAGWGPPVAGVMIGRAAYHHPWLFRNADTLFFGAGRDGGRSRREVVERYLDYAEKMVL---LHKDKFNGGCTPGA-LVKPLLNLFAGEPGGKIFRRRLSEGQASRKKEGWDINGDGGASAFVELVSLAMEDSLGSDMLDDVGLD 453
            P  LS+APMM+WTDRHYR+MMR +T+ T LYTEM+VD TLLH++D+   FLGHD+ E PLA+QLGG+  T +G  A + E YG F+EINLNVGCPSP+V+   CFGARLML+P+  R + +EM R+V+ T +TVKCRIG D+ DSY+    F+ TV  S        F +HARK  L G  LSP +NR++P LNY  V  L   FP    ++NGG+ + Q+A A L + +         + GVMIGRAAY++PW FR+ D L F A  + G SRR+++  YLDYAE M       K +      P A L+KP+LNLF GE GGK  +R ++   +++          G      +LV  A+E+ + S +LD    D
Sbjct:   11 PTRLSVAPMMDWTDRHYRFMMRQITRKTLLYTEMVVDQTLLHQQDNFDYFLGHDDIEHPLALQLGGNDVTSLGTVARLAEQYGRFHEINLNVGCPSPKVSGN-CFGARLMLNPELVRDLCYEMIRQVSSTPITVKCRIGVDDLDSYEHFHDFVSTVAASGVTD----FTVHARKCWLDGLKLSPHENRTIPALNYSYVGRLKADFPHLNIMLNGGVGSIQEAHALLQDPDL-------NIDGVMIGRAAYNNPWDFRDTDRLLFDA-PNPGFSRRQIIATYLDYAEDMQAKWGKKKHEVGSYAMPTATLLKPILNLFLGEYGGKAMKRHIANRWSAK----------GTQPELRDLVETALEECIPSSVLDSTADD 363
[Close]
BLAST of NO23G01310 vs. NCBI_GenBank
Match: XP_024576178.1 (dus-domain-containing protein [Plasmopara halstedii] >CEG39809.1 dus-domain-containing protein [Plasmopara halstedii])

HSP 1 Score: 312.4 bits (799), Expect = 2.300e-81
Identity = 170/348 (48.85%), Postives = 224/348 (64.37%), Query Frame = 0 
Query:   86 LSIAPMMEWTDRHYRYMMRGLTQHTQLYTEMIVDGTLLHRRDDLSLFLGHDECEQPLAVQLGGSSPTDVGEAAAICEAYGGFNEINLNVGCPSPRVATKACFGARLMLDPDKTRQILHEMTRRVT----------HTNVTVKCRIGADEKDSYDDLLSFIQTVRPSLPPSLPPTFILHARKALLSGLSPAQNRSVPPLNYPRVHSLVTAFPDCYFIINGGIQTWQDAQAHLSEEESAAAGWGPPVAGVMIGRAAYHHPWLFRNADTLFFGAGRDGGRSRREVVERYLDYAEKMVLLHKDKFNGG---------CTPGALVKPLLNLFAGEPGGKIFRRRLSEGQASRK 415
            LSIAPMM+WTDRHYR+MMR +T+ T L+TEMIVD TLLH++ +L  FLGHD  E PLA+QLGG+S  D+G AA + ++YGGF EINLN GCPS  V+++ CFGARLML+P++ R I   M R +              VTVKCRIG D+ DSY++L  ++  V  +    +    I+HARK LL GLSP +NR+VPPL Y  V+ L   FP+ YF +NGG+Q+ Q A+  L+            V G+MIGRAAY+ PW FR+AD L F A R+   SRRE++++YL+YAE +    +DK+                AL+KPLL LF GE GGK F+R +S  Q +RK
Sbjct:    7 LSIAPMMDWTDRHYRFMMRMITKETLLFTEMIVDQTLLHQKRNLEYFLGHDAVEAPLALQLGGNSIKDLGAAAHLSQSYGGFCEINLNTGCPSALVSSR-CFGARLMLEPERVRDICISMRRNIALAAEKNPDHPPAEVTVKCRIGVDDCDSYEELHHYVTMVASAGVRHI----IVHARKCLLKGLSPKENRTVPPLRYDVVYRLKQDFPELYFTLNGGVQSIQHARELLNSTN---------VDGIMIGRAAYNSPWNFRDADRLIFNADRNPNLSRREIIQKYLEYAENL----QDKWGSSKPLSELPYTMATSALMKPLLTLFNGEIGGKAFKREIS-AQWARK 335
[Close]
BLAST of NO23G01310 vs. NCBI_GenBank
Match: XP_008870145.1 (hypothetical protein, variant 1 [Aphanomyces invadans] >ETW01147.1 hypothetical protein, variant 1 [Aphanomyces invadans])

HSP 1 Score: 310.5 bits (794), Expect = 8.800e-81
Identity = 172/361 (47.65%), Postives = 225/361 (62.33%), Query Frame = 0 
Query:   92 MEWTDRHYRYMMRGLTQHTQLYTEMIVDGTLLHRRDDLSLFLGHDECEQPLAVQLGGSSPTDVGEAAAICEAYGGFNEINLNVGCPSPRVATKACFGARLMLDPDKTRQILHEMTRRVTHTNVTVKCRIGADEKDSYDDLLSFIQTVRPSLPPSLPPTFILHARKALLSG--LSPAQNRSVPPLNYPRVHSLVTAFPDCYFIINGGIQTWQDAQAHLSEEESAAAGWGPPVAGVMIGRAAYHHPWLFRNADTLFFGAGRDGGRSRREVVERYLDYAEKMVLLHKDKFNGG---CTPGALVKPLLNLFAGEPGGKIFRRRLSEGQASRKKEGWDINGDGGASAFVELVSLAMEDSLGSDMLD 448
            M+WTDRHYRYMMR +T+ T LYTEM+VD T++H++ +L  FLGHD  E PLA+Q+GGS+P  +GE A + E+YG F+EIN+NVGCPSP+V ++ CFGARLML+P   R I +EM R+VT T +TVKCR+G D+ DSY+ L  F+ TV  S        F +HARK  L G  LSP +NR+VPPLNY  V  L + FP    ++NGG+ + Q A   L +           V GVMIGRAAY+ PW FR+AD L FG   + G SRR+V+  YLDYAE M          G        L+KPLLNLF GE GGK  +R +++  A R  E  D+          +L+  AME  + + +LD
Sbjct:    1 MDWTDRHYRYMMRLITRRTLLYTEMVVDETIMHQKHNLDYFLGHDAVEYPLALQVGGSNPETLGEVAKMAESYGRFHEININVGCPSPKV-SRGCFGARLMLNPSLVRDICYEMRRQVTSTPITVKCRLGVDDFDSYEYLHEFVSTVEKSGVTE----FTVHARKCWLDGLRLSPHENRTVPPLNYDFVGRLKSDFPHLRIMLNGGVASIQHAHELLQDSSL-------NVDGVMIGRAAYNTPWNFRDADRLHFGV-PNPGLSRRQVIANYLDYAEDMQAKWGTVRQSGQYAMPTSLLMKPLLNLFNGEYGGKAMKRHVAQRWADRNGEALDLR---------DLIETAMEACVPAAVLD 339
[Close]
BLAST of NO23G01310 vs. NCBI_GenBank
Match: POM63030.1 (tRNA-dihydrouridine synthase [Phytophthora palmivora var. palmivora])

HSP 1 Score: 307.0 bits (785), Expect = 9.800e-80
Identity = 167/347 (48.13%), Postives = 218/347 (62.82%), Query Frame = 0 
Query:   82 PPYTLSIAPMMEWTDRHYRYMMRGLTQHTQLYTEMIVDGTLLHRRDDLSLFLGHDECEQPLAVQLGGSSPTDVGEAAAICEAYGGFNEINLNVGCPSPRVATKACFGARLMLDPDKTRQILHEMTRRVT----------HTNVTVKCRIGADEKDSYDDLLSFIQTVRPSLPPSLPPTFILHARKALLSGLSPAQNRSVPPLNYPRVHSLVTAFPDCYFIINGGIQTWQDAQAHLSEEESAAAGWGPPVAGVMIGRAAYHHPWLFRNADTLFFGAGRDGGRSRREVVERYLDYAEKMVLLHKDKFNGGCTP-----GALVKPLLNLFAGEPGGKIFRRRLSEGQASR 414
            P   LS+APMM+WTDRHYR+MMR +T+ T L+TEM+VD TLLH++ +L  FLGHD  E PLA+QLGG+S  D+G AA + ++YGGF EINLN GCPS  V+++ CFGARLMLDP++ R I   M R V              VTVKCRIG D+ DSY++L  ++ TV  +    +    I+HARK LL GLS   NR++PPL Y  V+ L   FP+  F +NGG+++ Q A+  L             V GVMIGRAAY+ PW FR+AD L F + R+   SRRE++ERYL+YAE +            +P      AL+KPLL LF GE GGK F+R +S   A +
Sbjct:    6 PVARLSVAPMMDWTDRHYRFMMRMITKETLLFTEMVVDQTLLHQKKNLDYFLGHDPAEAPLALQLGGNSVEDLGAAAHLSQSYGGFCEINLNTGCPSALVSSR-CFGARLMLDPERVRDICDSMRRNVALAAEKNPDHPAAEVTVKCRIGVDDCDSYEELHQYVTTVASAGVRHI----IVHARKCLLKGLSTKDNRTIPPLRYEVVYRLKQDFPELSFTLNGGVRSIQHARELLDTTN---------VDGVMIGRAAYNTPWNFRDADRLIFNSERNPNLSRREIIERYLEYAEDLQAKWGSTEPLSDSPYTMATSALMKPLLALFNGEIGGKAFKREISSQWAKK 338
[Close]
BLAST of NO23G01310 vs. NCBI_GenBank
Match: ETI51765.1 (hypothetical protein F443_04945 [Phytophthora parasitica P1569] >ETM51377.1 hypothetical protein L914_04764 [Phytophthora parasitica])

HSP 1 Score: 306.2 bits (783), Expect = 1.700e-79
Identity = 169/348 (48.56%), Postives = 219/348 (62.93%), Query Frame = 0 
Query:   82 PPYT-LSIAPMMEWTDRHYRYMMRGLTQHTQLYTEMIVDGTLLHRRDDLSLFLGHDECEQPLAVQLGGSSPTDVGEAAAICEAYGGFNEINLNVGCPSPRVATKACFGARLMLDPDKTRQILHEMTRRVT----------HTNVTVKCRIGADEKDSYDDLLSFIQTVRPSLPPSLPPTFILHARKALLSGLSPAQNRSVPPLNYPRVHSLVTAFPDCYFIINGGIQTWQDAQAHLSEEESAAAGWGPPVAGVMIGRAAYHHPWLFRNADTLFFGAGRDGGRSRREVVERYLDYAEKMVLLHKDKFNGGCTP-----GALVKPLLNLFAGEPGGKIFRRRLSEGQASR 414
            PP T LSIAPMM+WTDRHYR+MMR +T+ T L+TEM+VD TLLH++ +L  FLGHD  E PLA+QLGG+S  D+G AA + ++YGGF EINLN GCPS  V+++ CFGARLML+P++ R I   M R V              VTVKCRIG D+ DSY++L  ++ TV  +    +    I+HARK LL GLS   NR++PPL Y  V+ L   FP+  F +NGG+Q+ Q A+  L             V G+MIGRAAY+ PW FR+AD L F A R+   SRRE++E YL+YAE +            +P      AL+KPLL LF GE GGK F+R +S   A +
Sbjct:   10 PPVTRLSIAPMMDWTDRHYRFMMRMITKETLLFTEMVVDQTLLHQKKNLDYFLGHDPVEAPLALQLGGNSVEDLGAAAHLSQSYGGFCEINLNTGCPSALVSSR-CFGARLMLEPERVRDICDSMRRNVVLAAEEKPDRPAAEVTVKCRIGVDDCDSYEELHHYVATVASAGVRHI----IVHARKCLLKGLSTKDNRTIPPLRYEAVYRLKQDFPELSFTLNGGVQSIQHARELLDTTN---------VDGIMIGRAAYNTPWNFRDADRLIFNAERNPNLSRREIIELYLEYAEDLQAKWGSTEPLSDSPYTMATSALMKPLLALFNGEFGGKAFKREISAQWAKK 343
The following BLAST results are available for this feature:
BLAST of NO23G01310 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_009822874.19.100e-8648.93hypothetical protein H257_01396 [Aphanomyces astac... [more]
XP_008870144.11.700e-8448.11hypothetical protein H310_06752 [Aphanomyces invad... [more]
CCA16675.13.200e-8350.00tRNAdihydrouridine synthase putative [Albugo laiba... [more]
XP_012203484.13.200e-8346.81hypothetical protein SPRG_08867 [Saprolegnia paras... [more]
XP_008617984.15.500e-8346.28hypothetical protein SDRG_13663 [Saprolegnia dicli... [more]
OQR97057.11.400e-8146.01tRNA-dihydrouridine synthase [Achlya hypogyna][more]
XP_024576178.12.300e-8148.85dus-domain-containing protein [Plasmopara halstedi... [more]
XP_008870145.18.800e-8147.65hypothetical protein, variant 1 [Aphanomyces invad... [more]
POM63030.19.800e-8048.13tRNA-dihydrouridine synthase [Phytophthora palmivo... [more]
ETI51765.11.700e-7948.56hypothetical protein F443_04945 [Phytophthora para... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR039ncniR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR047ngnoR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO23G01310.1NO23G01310.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO23G01310.2NO23G01310.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO23G01310.3NO23G01310.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO23G01310.4NO23G01310.4-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO23G01310.5NO23G01310.5-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO23G01310.6NO23G01310.6-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602222gene_8483Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO23G01310.1NO23G01310.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO23G01310.2NO23G01310.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO23G01310.3NO23G01310.3Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO23G01310.4NO23G01310.4Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO23G01310.5NO23G01310.5Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO23G01310.6NO23G01310.6Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO23G01310 ID=NO23G01310|Name=NO23G01310|organism=Nannochloropsis oceanica|type=gene|length=3622bp
CAGACGCTAAACAGGAAGTGGCAGAGGAATCAAGGCATCCGCGAGGCAGA
CACAAATGGGAAAGTGCTATCTACGGGATATCATCACTTCAGACACGCCT
GCAACCGCTGCCCCTGATTACAATGAAGCAGATTCGGAAGTAGCACAAGC
AGAATTACCGGCAGAAGCACCAGTAGCGATAGAGGCAGCACTACCGGCAG
CAGCATCAGCAATAATACGAGAGCCAGAAGCACTGACAGAGAGTATTTCG
AGTGGCAGCAGCAGAAGTAGCAGCAGCAGCAACAACAACAACCTCAAGCC
TCCATATACTCTTTCCATCGCGCCCATGgtatgtcttgcacctttttgtc
ccttttcacttaatttcaccgatttccccacctcatggatgcgtggaacg
gactgatcgacgcatcactcttttgagagcttacccaacacacctcatcc
ttccctccctccctcactccctacttccctcctagATGGAATGGACCGAC
CGACACTACCGGTATATGATGAGAGGCCTGACACAACACACGCAACTTTA
CACGGAAATGATCGTGGACGGCACGgtgaggaaggaaaggagagagggtt
tgagtaccggtgagggaagcggagagtttagtgcgtgactcaagacattg
ttccctctccctctccctcccctttttcctccctcctttccagCTGCTGC
ATCGCCGAGACGATCTCTCCCTCTTCCTCGGCCACGACGAGTGCGAGCAG
CCCTTGGCAGTGCAATTGGGCGGTTCCTCCCCAACTGACGTGGGTGAAGC
AGCCGCAATCTGTGAGGCCTACGGAGGTTTCAATGAAATTAATCTCAATg
ttcgtgttttccttcctttcctcccttccccttctcccgttctccctctt
tttaattcatttacgttcatcctctgatacgttgatcatccctcccttcc
tccctcccttcctccctcccttcctcccttcctcccttcctccctccctc
cctccagGTCGGCTGTCCCTCGCCCCGGGTTGCGACTAAAGCCTGCTTCG
GTGCCCGTCTCATGCTTGgtgggtccctccctccctccctccctttatcc
cttcctctttcccttctccctttccccctcttagtctccttcgacgtcct
acccaccaacttcctctccctccctccctccctccctcccttcttgtctt
cttgtcttcagACCCAGACAAGACGAGGCAGATCCTCCATGAGATGACCC
GCCGTGTCACTCACACTAATGTTACTGTCAAGTGTAGAATAGGGGCCGAC
GAAAAAGACTCgtgagtgagccctccctccctccctccctccctccctcc
ttcttcactctgttatatcttccatctcacctcatttgatctccccctct
ctcccttcctccctccctcttttccacatcccaaatcagCTACGATGATC
TGCTCTCTTTCATCCAAACCGTCCGCCCTTCCCTCCCTCCCTCCTTACCT
CCTACCTTCATCCTCCACGCCCGCAAGGCCTTGCTTTCAGGTCTCTCCCC
TGCACAGAACCGCAGCGTCCCTCCTCTCAACTACCCCCGCGTACACTCCC
TTGTAACGGCGTTTCCCGACTGTTACTTTATCATCAACGGCGGCATTCAA
ACCTGGCAAGACGCTCAAGCCCATTTATCTGAAGAAGGTAGGAAGTCATG
GACAAGCACGTTGCGGTGCTCGATAGAGCCCCTGGCCGCCGCTTCCATGG
TTTGAAATATGAATGAATCAATCAATGTTCACACGAGTTAATAAACACGA
AATGATCATACGAATTACTCAATTAACCCATCATTGTATTCATCAGAAAA
TAATTATCAATATATATGTATATGTTTATATATATGTGTATATCAATTAT
TTTTTAAAATAATATTTCTATTTCAAAGCACAACTATCAAAATACAAATC
GAGGACCACACAAACAATTAAGGGGGTGAATGAAAAAATCATTCAATTAG
TTTAATCGAATAAATAAATAAAAATTACCAAAATTTTAATTCCTTTTTTG
ACCCAAAAAAAAAACAGAGAGTGCGGCCGCTGGATGGGGACCGCCAGTAG
CAGGTGTGATGATCGGGAGAGCCGCCTATCACCACCCCTGGCTATTTCGC
AACGCCGACACCCTCTTCTTTGGGGCAGGGAGGGATGGAGGGAGGTCGAG
GAGGGAGGTTGTCGAGCGGTACCTCGACTACGCGGAAAAGATGGTTCTGC
TGCACAAGgtacgtatcctccctcccttcctttctcccccctgtcaatcc
tctcccaacagcaaagattgttcgaaggccaggttttcttcacaaccctc
cgtccctcccttccttctttttccagGATAAGTTCAACGGTGGGTGTACC
CCGGGCGCGCTGGTCAAGCCTCTCCTCAACCTGTTTGCAGGAGAGCCGGG
AGGAAAGATCTTCAGACGCCGACTCAGCGAGGGACAGGCGAGCAGGAAGA
AGGTGGGCAACAGGGGGAGAAAAGGAGGGATGGAAGGAGGGAAAGGGAGA
GGGAAGAGTATCTTTTGGCTTATGTACGTCTTTCTTTTCTTTCGCGCACC
GATCCTTCTCCTTTTCTACTTCCCTTCCTCCTTCGCTACCTCTTTTTGCA
GGAAGGATGGGACATCAACGGCGACGGTGGTGCTTCGGCTTTCGTCGAGC
TCGTCTCTCTTGCAATGGAAGACAGCCTGGGTTCGGATATGCTGGACGAT
GTGGGATTAGATTAGATTAGATTAGATTTGAGTAGACCACCGCTGAAATT
AGATTAGACCACCGCTGGGATTAGACCACCGCCCTCCCTCCTTTCAGCCC
ATTTCCTCCAATCTCCAAAAGGAGCGTGTATGTACACCAGAATGTTTAGC
ACTGGCTCGAGATAAAGAAGTAAGGAATAACGACAAGGAGATGAAATGGC
TTTTCAATTTTATTTTTATTTTTCCCTAACTCAAGTACCGTTTCATTTTG
TGTGTGTATCCATCGTCCTGGTGGCTCTCATTCATATTTGCGTCAAACTC
AAAGCCACACCTATGGGATGGGGTTGTAGAAATAGGTAGACCGAAAGCAA
GGATGAGTTATGCCGCCCTCTTTACCCTCGAGTATTTGTGGCATATGTAC
CAGTACTGGGATCTCTCTGCTTGTAGACGAAGAAAGGCCCGGAGTAGATG
CGACCGAGACTAAATATTACGGGCTCGGGGGATACCCCCTTTGTGCTAGT
GCTGGATTGAAGGCACGTCTCGGAGTGTGGGGAGGGGTCGAATCGATTGT
CGCAGCCGCAGCAGCAGCAGCACCACCACCACCACCACCACCAAGGAGGA
GGTGGAGGAGACGCAGAAACAGGAGGAGGGGGGGAAGAAAGGGGGAAGGG
TTAACGGGTGAGACAATGGCGACCCTTTACTGCCGCAAGCCGTTGCAGAT
GCTTTGGGCGCGTTTCCCTCATTTTGACTGGAAGGAAAATAATACACTAA
TGGTCGATGATACAGACAAGACTTTCTCCTTATCGCTGGGAAATGGTGTG
AAGTTCAAGGAGTTCCGGATGGAGGTCAGGAAGGGAGCGAGGGAGGGAGG
GAGAGAGGGAGGGAGGGAGGAG
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protein sequence of NO23G01310.1

>NO23G01310.1-protein ID=NO23G01310.1-protein|Name=NO23G01310.1|organism=Nannochloropsis oceanica|type=polypeptide|length=453bp
MGKCYLRDIITSDTPATAAPDYNEADSEVAQAELPAEAPVAIEAALPAAA
SAIIREPEALTESISSGSSRSSSSSNNNNLKPPYTLSIAPMMEWTDRHYR
YMMRGLTQHTQLYTEMIVDGTLLHRRDDLSLFLGHDECEQPLAVQLGGSS
PTDVGEAAAICEAYGGFNEINLNVGCPSPRVATKACFGARLMLDPDKTRQ
ILHEMTRRVTHTNVTVKCRIGADEKDSYDDLLSFIQTVRPSLPPSLPPTF
ILHARKALLSGLSPAQNRSVPPLNYPRVHSLVTAFPDCYFIINGGIQTWQ
DAQAHLSEEESAAAGWGPPVAGVMIGRAAYHHPWLFRNADTLFFGAGRDG
GRSRREVVERYLDYAEKMVLLHKDKFNGGCTPGALVKPLLNLFAGEPGGK
IFRRRLSEGQASRKKEGWDINGDGGASAFVELVSLAMEDSLGSDMLDDVG
LD*
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protein sequence of NO23G01310.2

>NO23G01310.2-protein ID=NO23G01310.2-protein|Name=NO23G01310.2|organism=Nannochloropsis oceanica|type=polypeptide|length=332bp
MGKCYLRDIITSDTPATAAPDYNEADSEVAQAELPAEAPVAIEAALPAAA
SAIIREPEALTESISSGSSRSSSSSNNNNLKPPYTLSIAPMMEWTDRHYR
YMMRGLTQHTQLYTEMIVDGTLLHRRDDLSLFLGHDECEQPLAVQLGGSS
PTDVGEAAAICEAYGGFNEINLNVGCPSPRVATKACFGARLMLDPDKTRQ
ILHEMTRRVTHTNVTVKCRIGADEKDSYDDLLSFIQTVRPSLPPSLPPTF
ILHARKALLSGLSPAQNRSVPPLNYPRVHSLVTAFPDCYFIINGGIQTWQ
DAQAHLSEEGRKSWTSTLRCSIEPLAAASMV*
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protein sequence of NO23G01310.3

>NO23G01310.3-protein ID=NO23G01310.3-protein|Name=NO23G01310.3|organism=Nannochloropsis oceanica|type=polypeptide|length=501bp
MGKCYLRDIITSDTPATAAPDYNEADSEVAQAELPAEAPVAIEAALPAAA
SAIIREPEALTESISSGSSRSSSSSNNNNLKPPYTLSIAPMMEWTDRHYR
YMMRGLTQHTQLYTEMIVDGTLLHRRDDLSLFLGHDECEQPLAVQLGGSS
PTDVGEAAAICEAYGGFNEINLNVGCPSPRVATKACFGARLMLDPDKTRQ
ILHEMTRRVTHTNVTVKCRIGADEKDSYDDLLSFIQTVRPSLPPSLPPTF
ILHARKALLSGLSPAQNRSVPPLNYPRVHSLVTAFPDCYFIINGGIQTWQ
DAQAHLSEEESAAAGWGPPVAGVMIGRAAYHHPWLFRNADTLFFGAGRDG
GRSRREVVERYLDYAEKMVLLHKDKFNGGCTPGALVKPLLNLFAGEPGGK
IFRRRLSEGQASRKKVGNRGRKGGMEGGKGRGKSIFWLMYVFLFFRAPIL
LLFYFPSSFATSFCRKDGTSTATVVLRLSSSSSLLQWKTAWVRICWTMWD
*
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protein sequence of NO23G01310.4

>NO23G01310.4-protein ID=NO23G01310.4-protein|Name=NO23G01310.4|organism=Nannochloropsis oceanica|type=polypeptide|length=332bp
MGKCYLRDIITSDTPATAAPDYNEADSEVAQAELPAEAPVAIEAALPAAA
SAIIREPEALTESISSGSSRSSSSSNNNNLKPPYTLSIAPMMEWTDRHYR
YMMRGLTQHTQLYTEMIVDGTLLHRRDDLSLFLGHDECEQPLAVQLGGSS
PTDVGEAAAICEAYGGFNEINLNVGCPSPRVATKACFGARLMLDPDKTRQ
ILHEMTRRVTHTNVTVKCRIGADEKDSYDDLLSFIQTVRPSLPPSLPPTF
ILHARKALLSGLSPAQNRSVPPLNYPRVHSLVTAFPDCYFIINGGIQTWQ
DAQAHLSEEGRKSWTSTLRCSIEPLAAASMV*
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protein sequence of NO23G01310.5

>NO23G01310.5-protein ID=NO23G01310.5-protein|Name=NO23G01310.5|organism=Nannochloropsis oceanica|type=polypeptide|length=414bp
MGKCYLRDIITSDTPATAAPDYNEADSEVAQAELPAEAPVAIEAALPAAA
SAIIREPEALTESISSGSSRSSSSSNNNNLKPPYTLSIAPMMEWTDRHYR
YMMRGLTQHTQLYTEMIVDGTLLHRRDDLSLFLGHDECEQPLAVQLGGSS
PTDVGEAAAICEAYGGFNEINLNVGCPSPRVATKACFGARLMLDPDKTRQ
ILHEMTRRVTHTNVTVKCRIGADEKDSYDDLLSFIQTVRPSLPPSLPPTF
ILHARKALLSGLSPAQNRSVPPLNYPRVHSLVTAFPDCYFIINGGIQTWQ
DAQAHLSEEESAAAGWGPPVAGVMIGRAAYHHPWLFRNADTLFFGAGRDG
GRSRREVVERYLDYAEKMVLLHKVRILPPFLSPPCQSSPNSKDCSKARFS
SQPSVPPFLLFPG*
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protein sequence of NO23G01310.6

>NO23G01310.6-protein ID=NO23G01310.6-protein|Name=NO23G01310.6|organism=Nannochloropsis oceanica|type=polypeptide|length=332bp
MGKCYLRDIITSDTPATAAPDYNEADSEVAQAELPAEAPVAIEAALPAAA
SAIIREPEALTESISSGSSRSSSSSNNNNLKPPYTLSIAPMMEWTDRHYR
YMMRGLTQHTQLYTEMIVDGTLLHRRDDLSLFLGHDECEQPLAVQLGGSS
PTDVGEAAAICEAYGGFNEINLNVGCPSPRVATKACFGARLMLDPDKTRQ
ILHEMTRRVTHTNVTVKCRIGADEKDSYDDLLSFIQTVRPSLPPSLPPTF
ILHARKALLSGLSPAQNRSVPPLNYPRVHSLVTAFPDCYFIINGGIQTWQ
DAQAHLSEEGRKSWTSTLRCSIEPLAAASMV*
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Synonyms
Publications