NO23G01310.3, NO23G01310.3 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO23G01310.3
Unique Name	NO23G01310.3
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2420
Alignment location	chr23:472603..476224 +

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr23	genome	chr23:472603..476224 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO23G01310.3 vs.
Match: XP_009822874.1 (hypothetical protein H257_01396 [Aphanomyces astaci]; ETV88011.1 hypothetical protein H257_01396 [Aphanomyces astaci])

HSP 1 Score: 319.3 bits (817), Expect = 2.100e-83
Identity = 175/341 (51.32%), Postives = 222/341 (65.10%), Query Frame = 0

Query:   83 PYTLSIAPMMEWTDRHYRYMMRGLTQHTQLYTEMIVDGTLLHRRDDLSLFLGHDECEQPLAVQLGGSSPTDVGEAAAICEAYGGFNEINLNVGCPSPRVATKACFGARLMLDPDKTRQILHEMTRRVTHTNVTVKCRIGADEKDSYDDLLSFIQTVRPSLPPSLPPTFILHARKALLSG--LSPAQNRSVPPLNYPRVHSLVTAFPDCYFIINGGIQTWQDAQAHLSEEESAAAGWGPPVAGVMIGRAAYHHPWLFRNADTLFFGAGRDGGRSRREVVERYLDYAEKMVLLHKDKFNGGCTPG-------ALVKPLLNLFAGEPGGKIFRRRLSEGQASRK 415
            P  LS+APMM+WTDRHYRYMMR +T+ T LYTEM+VD TL+H++ +L  FLGHD  E PLA+QLGGS+P  +GE A + E+YG F+EIN+NVGCPSP+V +K CFGARLMLDP   R I HEM R+VT T +TVKCR+G D+ DSY+ L  F+ TV+ S        F +HARK  L G  LSP +NR+VP LNY  V  L   FP    ++NGG+ + Q A   L +           V G+MIGRAAY+ PW FR+AD L FG   + G SRR+VV  YLDYA+ M    + K+     PG        L+KPLLNLF GE GGK  +R +++  A R+
Sbjct:   11 PARLSVAPMMDWTDRHYRYMMRLITRRTLLYTEMVVDATLMHQKHNLDYFLGHDSLEHPLALQLGGSNPAMLGEVAKMAESYGSFHEININVGCPSPKV-SKNCFGARLMLDPAHVRDICHEMRRQVTSTPITVKCRLGVDDFDSYEYLHEFVATVQTSGVTE----FTVHARKCWLDGLRLSPHENRTVPALNYDFVGRLKADFPHLRIMLNGGVSSIQHAHELLQDPSL-------QVDGIMIGRAAYNTPWNFRDADRLHFGV-PNPGLSRRQVVAAYLDYADDM----QAKWGSVRKPGQYAMPTSLLMKPLLNLFNGEFGGKAVKRHVAQRWADRQ 334

The following BLAST results are available for this feature:

BLAST of NO23G01310.3 vs.

BLAST of NO23G01310.3 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
XP_009822874.1	2.100e-83	51.32	hypothetical protein H257_01396 [Aphanomyces astac...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO23G01310	NO23G01310	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO23G01310.3	NO23G01310.3-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO23G01310.3.cds1	NO23G01310.3.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO23G01310.3.cds2	NO23G01310.3.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO23G01310.3.cds3	NO23G01310.3.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO23G01310.3.cds4	NO23G01310.3.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO23G01310.3.cds5	NO23G01310.3.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO23G01310.3.cds6	NO23G01310.3.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO23G01310.3.cds7	NO23G01310.3.cds7	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO23G01310.3.cds8	NO23G01310.3.cds8	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr23:472603..476224+
coding sequence from alignment at chr23:472603..476224+

mRNA sequence

>NO23G01310.3 ID=NO23G01310.3|Name=NO23G01310.3|organism=Nannochloropsis oceanica|type=mRNA|length=2420bp
CAGACGCTAAACAGGAAGTGGCAGAGGAATCAAGGCATCCGCGAGGCAGA
CACAAATGGGAAAGTGCTATCTACGGGATATCATCACTTCAGACACGCCT
GCAACCGCTGCCCCTGATTACAATGAAGCAGATTCGGAAGTAGCACAAGC
AGAATTACCGGCAGAAGCACCAGTAGCGATAGAGGCAGCACTACCGGCAG
CAGCATCAGCAATAATACGAGAGCCAGAAGCACTGACAGAGAGTATTTCG
AGTGGCAGCAGCAGAAGTAGCAGCAGCAGCAACAACAACAACCTCAAGCC
TCCATATACTCTTTCCATCGCGCCCATGATGGAATGGACCGACCGACACT
ACCGGTATATGATGAGAGGCCTGACACAACACACGCAACTTTACACGGAA
ATGATCGTGGACGGCACGCTGCTGCATCGCCGAGACGATCTCTCCCTCTT
CCTCGGCCACGACGAGTGCGAGCAGCCCTTGGCAGTGCAATTGGGCGGTT
CCTCCCCAACTGACGTGGGTGAAGCAGCCGCAATCTGTGAGGCCTACGGA
GGTTTCAATGAAATTAATCTCAATGTCGGCTGTCCCTCGCCCCGGGTTGC
GACTAAAGCCTGCTTCGGTGCCCGTCTCATGCTTGACCCAGACAAGACGA
GGCAGATCCTCCATGAGATGACCCGCCGTGTCACTCACACTAATGTTACT
GTCAAGTGTAGAATAGGGGCCGACGAAAAAGACTCCTACGATGATCTGCT
CTCTTTCATCCAAACCGTCCGCCCTTCCCTCCCTCCCTCCTTACCTCCTA
CCTTCATCCTCCACGCCCGCAAGGCCTTGCTTTCAGGTCTCTCCCCTGCA
CAGAACCGCAGCGTCCCTCCTCTCAACTACCCCCGCGTACACTCCCTTGT
AACGGCGTTTCCCGACTGTTACTTTATCATCAACGGCGGCATTCAAACCT
GGCAAGACGCTCAAGCCCATTTATCTGAAGAAGAGAGTGCGGCCGCTGGA
TGGGGACCGCCAGTAGCAGGTGTGATGATCGGGAGAGCCGCCTATCACCA
CCCCTGGCTATTTCGCAACGCCGACACCCTCTTCTTTGGGGCAGGGAGGG
ATGGAGGGAGGTCGAGGAGGGAGGTTGTCGAGCGGTACCTCGACTACGCG
GAAAAGATGGTTCTGCTGCACAAGGATAAGTTCAACGGTGGGTGTACCCC
GGGCGCGCTGGTCAAGCCTCTCCTCAACCTGTTTGCAGGAGAGCCGGGAG
GAAAGATCTTCAGACGCCGACTCAGCGAGGGACAGGCGAGCAGGAAGAAG
GTGGGCAACAGGGGGAGAAAAGGAGGGATGGAAGGAGGGAAAGGGAGAGG
GAAGAGTATCTTTTGGCTTATGTACGTCTTTCTTTTCTTTCGCGCACCGA
TCCTTCTCCTTTTCTACTTCCCTTCCTCCTTCGCTACCTCTTTTTGCAGG
AAGGATGGGACATCAACGGCGACGGTGGTGCTTCGGCTTTCGTCGAGCTC
GTCTCTCTTGCAATGGAAGACAGCCTGGGTTCGGATATGCTGGACGATGT
GGGATTAGATTAGATTAGATTAGATTTGAGTAGACCACCGCTGAAATTAG
ATTAGACCACCGCTGGGATTAGACCACCGCCCTCCCTCCTTTCAGCCCAT
TTCCTCCAATCTCCAAAAGGAGCGTGTATGTACACCAGAATGTTTAGCAC
TGGCTCGAGATAAAGAAGTAAGGAATAACGACAAGGAGATGAAATGGCTT
TTCAATTTTATTTTTATTTTTCCCTAACTCAAGTACCGTTTCATTTTGTG
TGTGTATCCATCGTCCTGGTGGCTCTCATTCATATTTGCGTCAAACTCAA
AGCCACACCTATGGGATGGGGTTGTAGAAATAGGTAGACCGAAAGCAAGG
ATGAGTTATGCCGCCCTCTTTACCCTCGAGTATTTGTGGCATATGTACCA
GTACTGGGATCTCTCTGCTTGTAGACGAAGAAAGGCCCGGAGTAGATGCG
ACCGAGACTAAATATTACGGGCTCGGGGGATACCCCCTTTGTGCTAGTGC
TGGATTGAAGGCACGTCTCGGAGTGTGGGGAGGGGTCGAATCGATTGTCG
CAGCCGCAGCAGCAGCAGCACCACCACCACCACCACCACCAAGGAGGAGG
TGGAGGAGACGCAGAAACAGGAGGAGGGGGGGAAGAAAGGGGGAAGGGTT
AACGGGTGAGACAATGGCGACCCTTTACTGCCGCAAGCCGTTGCAGATGC
TTTGGGCGCGTTTCCCTCATTTTGACTGGAAGGAAAATAATACACTAATG
GTCGATGATACAGACAAGACTTTCTCCTTATCGCTGGGAAATGGTGTGAA
GTTCAAGGAGTTCCGGATGGAGGTCAGGAAGGGAGCGAGGGAGGGAGGGA
GAGAGGGAGGGAGGGAGGAG

protein sequence of NO23G01310.3

>NO23G01310.3-protein ID=NO23G01310.3-protein|Name=NO23G01310.3|organism=Nannochloropsis oceanica|type=polypeptide|length=501bp
MGKCYLRDIITSDTPATAAPDYNEADSEVAQAELPAEAPVAIEAALPAAA
SAIIREPEALTESISSGSSRSSSSSNNNNLKPPYTLSIAPMMEWTDRHYR
YMMRGLTQHTQLYTEMIVDGTLLHRRDDLSLFLGHDECEQPLAVQLGGSS
PTDVGEAAAICEAYGGFNEINLNVGCPSPRVATKACFGARLMLDPDKTRQ
ILHEMTRRVTHTNVTVKCRIGADEKDSYDDLLSFIQTVRPSLPPSLPPTF
ILHARKALLSGLSPAQNRSVPPLNYPRVHSLVTAFPDCYFIINGGIQTWQ
DAQAHLSEEESAAAGWGPPVAGVMIGRAAYHHPWLFRNADTLFFGAGRDG
GRSRREVVERYLDYAEKMVLLHKDKFNGGCTPGALVKPLLNLFAGEPGGK
IFRRRLSEGQASRKKVGNRGRKGGMEGGKGRGKSIFWLMYVFLFFRAPIL
LLFYFPSSFATSFCRKDGTSTATVVLRLSSSSSLLQWKTAWVRICWTMWD
*

mRNA from alignment at chr23:472603..476224+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO23G01310.3 ID=NO23G01310.3|Name=NO23G01310.3|organism=Nannochloropsis oceanica|type=mRNA|length=3622bp|location=Sequence derived from alignment at chr23:472603..476224+ (Nannochloropsis oceanica)
CAGACGCTAAACAGGAAGTGGCAGAGGAATCAAGGCATCCGCGAGGCAGA
CACAAATGGGAAAGTGCTATCTACGGGATATCATCACTTCAGACACGCCT
GCAACCGCTGCCCCTGATTACAATGAAGCAGATTCGGAAGTAGCACAAGC
AGAATTACCGGCAGAAGCACCAGTAGCGATAGAGGCAGCACTACCGGCAG
CAGCATCAGCAATAATACGAGAGCCAGAAGCACTGACAGAGAGTATTTCG
AGTGGCAGCAGCAGAAGTAGCAGCAGCAGCAACAACAACAACCTCAAGCC
TCCATATACTCTTTCCATCGCGCCCATGGTATGTCTTGCACCTTTTTGTC
CCTTTTCACTTAATTTCACCGATTTCCCCACCTCATGGATGCGTGGAACG
GACTGATCGACGCATCACTCTTTTGAGAGCTTACCCAACACACCTCATCC
TTCCCTCCCTCCCTCACTCCCTACTTCCCTCCTAGATGGAATGGACCGAC
CGACACTACCGGTATATGATGAGAGGCCTGACACAACACACGCAACTTTA
CACGGAAATGATCGTGGACGGCACGGTGAGGAAGGAAAGGAGAGAGGGTT
TGAGTACCGGTGAGGGAAGCGGAGAGTTTAGTGCGTGACTCAAGACATTG
TTCCCTCTCCCTCTCCCTCCCCTTTTTCCTCCCTCCTTTCCAGCTGCTGC
ATCGCCGAGACGATCTCTCCCTCTTCCTCGGCCACGACGAGTGCGAGCAG
CCCTTGGCAGTGCAATTGGGCGGTTCCTCCCCAACTGACGTGGGTGAAGC
AGCCGCAATCTGTGAGGCCTACGGAGGTTTCAATGAAATTAATCTCAATG
TTCGTGTTTTCCTTCCTTTCCTCCCTTCCCCTTCTCCCGTTCTCCCTCTT
TTTAATTCATTTACGTTCATCCTCTGATACGTTGATCATCCCTCCCTTCC
TCCCTCCCTTCCTCCCTCCCTTCCTCCCTTCCTCCCTTCCTCCCTCCCTC
CCTCCAGGTCGGCTGTCCCTCGCCCCGGGTTGCGACTAAAGCCTGCTTCG
GTGCCCGTCTCATGCTTGGTGGGTCCCTCCCTCCCTCCCTCCCTTTATCC
CTTCCTCTTTCCCTTCTCCCTTTCCCCCTCTTAGTCTCCTTCGACGTCCT
ACCCACCAACTTCCTCTCCCTCCCTCCCTCCCTCCCTCCCTTCTTGTCTT
CTTGTCTTCAGACCCAGACAAGACGAGGCAGATCCTCCATGAGATGACCC
GCCGTGTCACTCACACTAATGTTACTGTCAAGTGTAGAATAGGGGCCGAC
GAAAAAGACTCGTGAGTGAGCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
TTCTTCACTCTGTTATATCTTCCATCTCACCTCATTTGATCTCCCCCTCT
CTCCCTTCCTCCCTCCCTCTTTTCCACATCCCAAATCAGCTACGATGATC
TGCTCTCTTTCATCCAAACCGTCCGCCCTTCCCTCCCTCCCTCCTTACCT
CCTACCTTCATCCTCCACGCCCGCAAGGCCTTGCTTTCAGGTCTCTCCCC
TGCACAGAACCGCAGCGTCCCTCCTCTCAACTACCCCCGCGTACACTCCC
TTGTAACGGCGTTTCCCGACTGTTACTTTATCATCAACGGCGGCATTCAA
ACCTGGCAAGACGCTCAAGCCCATTTATCTGAAGAAGGTAGGAAGTCATG
GACAAGCACGTTGCGGTGCTCGATAGAGCCCCTGGCCGCCGCTTCCATGG
TTTGAAATATGAATGAATCAATCAATGTTCACACGAGTTAATAAACACGA
AATGATCATACGAATTACTCAATTAACCCATCATTGTATTCATCAGAAAA
TAATTATCAATATATATGTATATGTTTATATATATGTGTATATCAATTAT
TTTTTAAAATAATATTTCTATTTCAAAGCACAACTATCAAAATACAAATC
GAGGACCACACAAACAATTAAGGGGGTGAATGAAAAAATCATTCAATTAG
TTTAATCGAATAAATAAATAAAAATTACCAAAATTTTAATTCCTTTTTTG
ACCCAAAAAAAAAACAGAGAGTGCGGCCGCTGGATGGGGACCGCCAGTAG
CAGGTGTGATGATCGGGAGAGCCGCCTATCACCACCCCTGGCTATTTCGC
AACGCCGACACCCTCTTCTTTGGGGCAGGGAGGGATGGAGGGAGGTCGAG
GAGGGAGGTTGTCGAGCGGTACCTCGACTACGCGGAAAAGATGGTTCTGC
TGCACAAGGTACGTATCCTCCCTCCCTTCCTTTCTCCCCCCTGTCAATCC
TCTCCCAACAGCAAAGATTGTTCGAAGGCCAGGTTTTCTTCACAACCCTC
CGTCCCTCCCTTCCTTCTTTTTCCAGGATAAGTTCAACGGTGGGTGTACC
CCGGGCGCGCTGGTCAAGCCTCTCCTCAACCTGTTTGCAGGAGAGCCGGG
AGGAAAGATCTTCAGACGCCGACTCAGCGAGGGACAGGCGAGCAGGAAGA
AGGTGGGCAACAGGGGGAGAAAAGGAGGGATGGAAGGAGGGAAAGGGAGA
GGGAAGAGTATCTTTTGGCTTATGTACGTCTTTCTTTTCTTTCGCGCACC
GATCCTTCTCCTTTTCTACTTCCCTTCCTCCTTCGCTACCTCTTTTTGCA
GGAAGGATGGGACATCAACGGCGACGGTGGTGCTTCGGCTTTCGTCGAGC
TCGTCTCTCTTGCAATGGAAGACAGCCTGGGTTCGGATATGCTGGACGAT
GTGGGATTAGATTAGATTAGATTAGATTTGAGTAGACCACCGCTGAAATT
AGATTAGACCACCGCTGGGATTAGACCACCGCCCTCCCTCCTTTCAGCCC
ATTTCCTCCAATCTCCAAAAGGAGCGTGTATGTACACCAGAATGTTTAGC
ACTGGCTCGAGATAAAGAAGTAAGGAATAACGACAAGGAGATGAAATGGC
TTTTCAATTTTATTTTTATTTTTCCCTAACTCAAGTACCGTTTCATTTTG
TGTGTGTATCCATCGTCCTGGTGGCTCTCATTCATATTTGCGTCAAACTC
AAAGCCACACCTATGGGATGGGGTTGTAGAAATAGGTAGACCGAAAGCAA
GGATGAGTTATGCCGCCCTCTTTACCCTCGAGTATTTGTGGCATATGTAC
CAGTACTGGGATCTCTCTGCTTGTAGACGAAGAAAGGCCCGGAGTAGATG
CGACCGAGACTAAATATTACGGGCTCGGGGGATACCCCCTTTGTGCTAGT
GCTGGATTGAAGGCACGTCTCGGAGTGTGGGGAGGGGTCGAATCGATTGT
CGCAGCCGCAGCAGCAGCAGCACCACCACCACCACCACCACCAAGGAGGA
GGTGGAGGAGACGCAGAAACAGGAGGAGGGGGGGAAGAAAGGGGGAAGGG
TTAACGGGTGAGACAATGGCGACCCTTTACTGCCGCAAGCCGTTGCAGAT
GCTTTGGGCGCGTTTCCCTCATTTTGACTGGAAGGAAAATAATACACTAA
TGGTCGATGATACAGACAAGACTTTCTCCTTATCGCTGGGAAATGGTGTG
AAGTTCAAGGAGTTCCGGATGGAGGTCAGGAAGGGAGCGAGGGAGGGAGG
GAGAGAGGGAGGGAGGGAGGAG

Coding sequence (CDS) from alignment at chr23:472603..476224+

>NO23G01310.3 ID=NO23G01310.3|Name=NO23G01310.3|organism=Nannochloropsis oceanica|type=CDS|length=1503bp|location=Sequence derived from alignment at chr23:472603..476224+ (Nannochloropsis oceanica)
ATGGGAAAGTGCTATCTACGGGATATCATCACTTCAGACACGCCTGCAAC
CGCTGCCCCTGATTACAATGAAGCAGATTCGGAAGTAGCACAAGCAGAAT
TACCGGCAGAAGCACCAGTAGCGATAGAGGCAGCACTACCGGCAGCAGCA
TCAGCAATAATACGAGAGCCAGAAGCACTGACAGAGAGTATTTCGAGTGG
CAGCAGCAGAAGTAGCAGCAGCAGCAACAACAACAACCTCAAGCCTCCAT
ATACTCTTTCCATCGCGCCCATGATGGAATGGACCGACCGACACTACCGG
TATATGATGAGAGGCCTGACACAACACACGCAACTTTACACGGAAATGAT
CGTGGACGGCACGCTGCTGCATCGCCGAGACGATCTCTCCCTCTTCCTCG
GCCACGACGAGTGCGAGCAGCCCTTGGCAGTGCAATTGGGCGGTTCCTCC
CCAACTGACGTGGGTGAAGCAGCCGCAATCTGTGAGGCCTACGGAGGTTT
CAATGAAATTAATCTCAATGTCGGCTGTCCCTCGCCCCGGGTTGCGACTA
AAGCCTGCTTCGGTGCCCGTCTCATGCTTGACCCAGACAAGACGAGGCAG
ATCCTCCATGAGATGACCCGCCGTGTCACTCACACTAATGTTACTGTCAA
GTGTAGAATAGGGGCCGACGAAAAAGACTCCTACGATGATCTGCTCTCTT
TCATCCAAACCGTCCGCCCTTCCCTCCCTCCCTCCTTACCTCCTACCTTC
ATCCTCCACGCCCGCAAGGCCTTGCTTTCAGGTCTCTCCCCTGCACAGAA
CCGCAGCGTCCCTCCTCTCAACTACCCCCGCGTACACTCCCTTGTAACGG
CGTTTCCCGACTGTTACTTTATCATCAACGGCGGCATTCAAACCTGGCAA
GACGCTCAAGCCCATTTATCTGAAGAAGAGAGTGCGGCCGCTGGATGGGG
ACCGCCAGTAGCAGGTGTGATGATCGGGAGAGCCGCCTATCACCACCCCT
GGCTATTTCGCAACGCCGACACCCTCTTCTTTGGGGCAGGGAGGGATGGA
GGGAGGTCGAGGAGGGAGGTTGTCGAGCGGTACCTCGACTACGCGGAAAA
GATGGTTCTGCTGCACAAGGATAAGTTCAACGGTGGGTGTACCCCGGGCG
CGCTGGTCAAGCCTCTCCTCAACCTGTTTGCAGGAGAGCCGGGAGGAAAG
ATCTTCAGACGCCGACTCAGCGAGGGACAGGCGAGCAGGAAGAAGGTGGG
CAACAGGGGGAGAAAAGGAGGGATGGAAGGAGGGAAAGGGAGAGGGAAGA
GTATCTTTTGGCTTATGTACGTCTTTCTTTTCTTTCGCGCACCGATCCTT
CTCCTTTTCTACTTCCCTTCCTCCTTCGCTACCTCTTTTTGCAGGAAGGA
TGGGACATCAACGGCGACGGTGGTGCTTCGGCTTTCGTCGAGCTCGTCTC
TCTTGCAATGGAAGACAGCCTGGGTTCGGATATGCTGGACGATGTGGGAT
TAG

Synonyms

Publications