jgi.p|Nanoce1779_2|602222, gene_8483 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|602222
Unique Namegene_8483
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_24:419261..422772 +

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Properties
Property NameValue
TranscriptId602308
ProteinId602222
Product nameDihydrouridine synthase (Dus)-domain containing protein
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_24supercontigscaffold_24:419261..422772 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0043738reduced coenzyme F420 dehydrogenase activity
GO:0043826sulfur oxygenase reductase activity
GO:0043883malolactic enzyme activity
GO:0017150tRNA dihydrouridine synthase activity
GO:0050660flavin adenine dinucleotide binding
Vocabulary: Biological Process
TermDefinition
GO:0051341regulation of oxidoreductase activity
GO:0008033tRNA processing
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL039ncniL039Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO23G01310NO23G01310Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602222mRNA_8483-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602222mRNA_8483Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|602222

>mRNA_8483-protein ID=mRNA_8483-protein|Name=jgi.p|Nanoce1779_2|602222|organism=Nannochloropsis oceanica|type=polypeptide|length=411bp
MMEWTDRHYRYMMRGLTQHTQLYTEMIVDGTLLHRRDDLSLFLGHDECEQ
PLAVQLGGSSPTDVGEAAAICEAYGGFNEINLNVGCPSPRVATKACFGAR
LMLDPDKTRQILHEMTRRVTHTNVTVKCRIGADEKDSYDDLLSFIQTVRP
SLPPSLPPTFILHARKALLSGLSPAQNRSVPPLNYPRVHSLVTAFPDCYF
IINGGIQTWQDAQAHLSEEESAAAGWGPPVAGVMIGRAAYHHPWLFRNAD
TLFFGAGRDGGRSRREVVERYLDYAEKMVLLHKDKFNGGCTPGALVKPLL
NLFAGEPGGKIFRRRLSEGQASRKKVGNRGRKGGMEGGKGRGKSIFWLMY
VFLFFRAPILLLFYFPSSFATSFCRKDGTSTATVVLRLSSSSSLLQWKTA
WVRICWTMWD*
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Synonyms
Publications