NO22G00880, NO22G00880 (gene) Nannochloropsis oceanica

Overview
NameNO22G00880
Unique NameNO22G00880
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1935
Alignment locationchr22:277637..279571 -

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Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:277637..279571 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of NO22G00880 vs. NCBI_GenBank
Match: EWM21453.1 (hypothetical protein Naga_100019g4 [Nannochloropsis gaditana])

HSP 1 Score: 273.1 bits (697), Expect = 5.400e-70
Identity = 137/156 (87.82%), Postives = 151/156 (96.79%), Query Frame = 0
Query:    1 MVCDDKRKIIAYLWYLNALLSIAYVIVAIAAAANQKDLETATTNHAAGFAAIWSMIILFLIIVGGTITMKRLKTPIATGVFLGASIMFSQMELLLFAIFVGLAKMSNGDVERRSNNAMAVFSFFLFVLYAVFSVCLFFLRHYVIDDSPAPPENNFA 157
            MVCDDKRK+IAYLWYLNALLSIAYV+VAIAAAANQKDLETATTNHAAGFAAIWSM+ILFLII+GGTITMKRLKTPIATGVFLGA IM+SQM+LLLFAIFVGLA+ S+GDVERRSNNAMAVF+FFLF+LY VFSVCL+F RHYVIDD+PAP EN++A
Sbjct:   34 MVCDDKRKVIAYLWYLNALLSIAYVVVAIAAAANQKDLETATTNHAAGFAAIWSMLILFLIIIGGTITMKRLKTPIATGVFLGACIMYSQMQLLLFAIFVGLAQTSSGDVERRSNNAMAVFAFFLFILYTVFSVCLYFFRHYVIDDAPAPAENSYA 189          
BLAST of NO22G00880 vs. NCBI_GenBank
Match: XP_005854322.1 (hypothetical protein NGA_0208701 [Nannochloropsis gaditana CCMP526] >XP_005854850.1 hypothetical protein NGA_0208702 [Nannochloropsis gaditana CCMP526] >EKU21504.1 hypothetical protein NGA_0208702 [Nannochloropsis gaditana CCMP526] >EKU22037.1 hypothetical protein NGA_0208701 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 113.2 bits (282), Expect = 7.200e-22
Identity = 59/142 (41.55%), Postives = 88/142 (61.97%), Query Frame = 0
Query:    2 VCDDKRKIIAYLWYLNALLSIAYVIVAIAAAANQKDLETATTNHAAGFAAIWSMIILFLIIVGGTITMKRLKTPIATGVFLGASIMFSQMELLLFAIFVGLAKMSNGDVERRSNNAMAVFSFFLFVLYAVFSVCLFFLRHYV 144
            + DDK +++   WY    +S+AYVI A+  A+     ET        FAAIWSM++L  I++GGT+   R++TP+ATGV LG + MFSQ+EL+LF IF   ++ +    E+ +  A A F+FFL V++ VFS+ L   R Y+
Sbjct:    3 IFDDKGRLLKLTWYTCMAVSVAYVIAALVLASRLSKSETPVATQPTAFAAIWSMLVLLAILIGGTLVFNRVQTPVATGVLLGCTAMFSQIELMLFTIFEAHSRDAVTASEKSAGQATATFAFFLAVIFGVFSIFLLMWRQYL 144          
BLAST of NO22G00880 vs. NCBI_GenBank
Match: EWM30061.1 (hypothetical protein Naga_100170g6 [Nannochloropsis gaditana])

HSP 1 Score: 113.2 bits (282), Expect = 7.200e-22
Identity = 59/142 (41.55%), Postives = 88/142 (61.97%), Query Frame = 0
Query:    2 VCDDKRKIIAYLWYLNALLSIAYVIVAIAAAANQKDLETATTNHAAGFAAIWSMIILFLIIVGGTITMKRLKTPIATGVFLGASIMFSQMELLLFAIFVGLAKMSNGDVERRSNNAMAVFSFFLFVLYAVFSVCLFFLRHYV 144
            + DDK +++   WY    +S+AYVI A+  A+     ET        FAAIWSM++L  I++GGT+   R++TP+ATGV LG + MFSQ+EL+LF IF   ++ +    E+ +  A A F+FFL V++ VFS+ L   R Y+
Sbjct:   39 IFDDKGRLLKLTWYTCMAVSVAYVIAALVLASRLSKSETPVATQPTAFAAIWSMLVLLAILIGGTLVFNRVQTPVATGVLLGCTAMFSQIELMLFTIFEAHSRDAVTASEKSAGQATATFAFFLAVIFGVFSIFLLMWRQYL 180          
BLAST of NO22G00880 vs. NCBI_GenBank
Match: CCI41851.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 94.0 bits (232), Expect = 4.500e-16
Identity = 58/157 (36.94%), Postives = 85/157 (54.14%), Query Frame = 0
Query:    4 DDKRKIIAYLWYLNALLSIAYVIVAIAAAANQKDLETATTNHAAGFAAIWSMIILFLIIVGGTITMKRLKTPIATGVFLGASIMFSQMELLLFAIFVG---LAK-----MSNGDVERRSNNAMAVFSFFLFVLYAVFSVCLFFLRHYVIDDSPAPPE 153
            ++ R ++ YLW+   ++   Y I AI AA         + + + GFA IW+MI++  + VGGT+ M++ +TP+A G F+G  IM S     L  +FVG   LAK      +  D    +N A AVFSFF+F LYA+F   L   R  VI + P+  E
Sbjct:   17 ENPRLLVTYLWFSTLVVGFMYAITAIVAAVENSG-RNLSDSKSLGFAGIWAMILMIGLSVGGTLVMRKFQTPLAVGFFIGVVIMMSFQMFSLTVLFVGESYLAKEERTLFNKTDTNIHTNEAAAVFSFFMFTLYAIFGAVLVKHRSIVIREVPSTTE 172          
BLAST of NO22G00880 vs. NCBI_GenBank
Match: POM73153.1 (Hypothetical protein PHPALM_10022 [Phytophthora palmivora var. palmivora])

HSP 1 Score: 91.3 bits (225), Expect = 2.900e-15
Identity = 54/150 (36.00%), Postives = 86/150 (57.33%), Query Frame = 0
Query:    4 DDKRKIIAYLWYLNALLSIAYVIVAIAAAANQKDLETATTNHAAGFAAIWSMIILFLIIVGGTITMKRLKTPIATGVFLGASIMFSQMELLLFAIFVGLA-----KMSNGD--VERRSNNAMAVFSFFLFVLYAVFSVCLFFLRHYVIDD 147
            ++ + +I YLW+   L    Y I AI AA N  D +  + + + GF  IW+MI++ ++ +GGT+ M++ +TP+A G  +G  +M S     L  IF G A     + + GD      SN A +VFSFF+F+LYA+F++ L   R+ VI +
Sbjct:   13 NNPKMLITYLWFSTMLFGFMYAIAAIVAAVN-NDADGESDSKSLGFVGIWAMILIVMLSIGGTMVMRKHQTPLAVGFLIGVVLMMSLQMFSLSIIFAGYAYLARIERAKGDEHTNVHSNEAGSVFSFFMFILYAIFTIVLVRHRNIVIKE 161          
BLAST of NO22G00880 vs. NCBI_GenBank
Match: CBJ49273.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 90.9 bits (224), Expect = 3.800e-15
Identity = 53/147 (36.05%), Postives = 88/147 (59.86%), Query Frame = 0
Query:    8 KIIAYLWYLNALLSIAYVIVAIAAAANQKDLETATTNHAAGFAAIWSMIILFLIIVGGTITMKRLKTPIATGVFLGASIMFSQMELLLFAIFVGLAKMSNGDVERRSNNAMAVFSFFLFVLYAVFSVCLFFLRHYVIDDSPAPPENN 155
            K+++Y WYL  + +   V+VA+  A+      +A  +HAA FA++W++ ++  + V GT+ +K+  TP+A G  LG + M SQ   +LFA+F+ LA+ ++       +  MAVFSFFLF+LY +FS  L   R  V+ ++P    +N
Sbjct:   23 KVVSYSWYLVLIFAAVDVLVALINASTND--SSANGSHAASFASVWTLFMVLGVSVAGTVILKKYHTPLAVGTLLGLTTMMSQFMFVLFAVFLALAEYADEPGLATGDRTMAVFSFFLFLLYGLFSFVLGRYRTTVM-NTPGTASSN 166          
BLAST of NO22G00880 vs. NCBI_GenBank
Match: CCA23673.1 (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 90.9 bits (224), Expect = 3.800e-15
Identity = 57/151 (37.75%), Postives = 83/151 (54.97%), Query Frame = 0
Query:    4 DDKRKIIAYLWYLNALLSIAYVIVAIAAAANQKDLETATTNHAAGFAAIWSMIILFLIIVGGTITMKRLKTPIATGVFLGASIMFSQMELLLFAIFVG---LAK-----MSNGDVERRSNNAMAVFSFFLFVLYAVFSVCLFFLRHYVIDD 147
            ++ R ++ YLW+   ++   Y I AI AA         + + + GFA IW+MI++  + VGGT+ M++ +TP+A G F+G  IM S     L  +FVG   LAK      +N D    +N A AVFSFF+F LYA+F   L   R  VI +
Sbjct:  106 ENPRLLVTYLWFSTLVVGFMYAITAIVAAVYNNG-HNLSDSKSLGFAGIWTMILMIGLSVGGTLVMRKYQTPLAVGFFIGVVIMMSFQMFSLTILFVGGSYLAKEERTLFNNTDTNIHTNQAAAVFSFFMFALYAIFGAVLVKHRSIVIKE 255          
BLAST of NO22G00880 vs. NCBI_GenBank
Match: CCA25334.1 (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 90.9 bits (224), Expect = 3.800e-15
Identity = 57/151 (37.75%), Postives = 83/151 (54.97%), Query Frame = 0
Query:    4 DDKRKIIAYLWYLNALLSIAYVIVAIAAAANQKDLETATTNHAAGFAAIWSMIILFLIIVGGTITMKRLKTPIATGVFLGASIMFSQMELLLFAIFVG---LAK-----MSNGDVERRSNNAMAVFSFFLFVLYAVFSVCLFFLRHYVIDD 147
            ++ R ++ YLW+   ++   Y I AI AA         + + + GFA IW+MI++  + VGGT+ M++ +TP+A G F+G  IM S     L  +FVG   LAK      +N D    +N A AVFSFF+F LYA+F   L   R  VI +
Sbjct:   96 ENPRLLVTYLWFSTLVVGFMYAITAIVAAVYNNG-HNLSDSKSLGFAGIWTMILMIGLSVGGTLVMRKYQTPLAVGFFIGVVIMMSFQMFSLTILFVGGSYLAKEERTLFNNTDTNIHTNQAAAVFSFFMFALYAIFGAVLVKHRSIVIKE 245          
BLAST of NO22G00880 vs. NCBI_GenBank
Match: XP_009520078.1 (hypothetical protein PHYSODRAFT_484403 [Phytophthora sojae] >EGZ24790.1 hypothetical protein PHYSODRAFT_484403 [Phytophthora sojae])

HSP 1 Score: 90.5 bits (223), Expect = 5.000e-15
Identity = 56/150 (37.33%), Postives = 85/150 (56.67%), Query Frame = 0
Query:    4 DDKRKIIAYLWYLNALLSIAYVIVAIAAAANQKDLETATTNHAAGFAAIWSMIILFLIIVGGTITMKRLKTPIATGVFLGASIMFSQMELLLFAIFVGLA-----KMSNGD--VERRSNNAMAVFSFFLFVLYAVFSVCLFFLRHYVIDD 147
            ++ + +I YLW+   L    Y I AI AA N  D E  + + + GF  +W+MI++  + VGGT+ M++ +TP+A G  +G  +M S     L  IF G A     + + GD      SN A +VFSFF+F+LYAVF++ L   R+ VI +
Sbjct:   13 NNPKMLITYLWFSTMLFGFMYAIAAIVAAVN-NDGEGESDSKSLGFVGVWAMILIVALSVGGTMVMRKHQTPLAVGFLIGVVLMMSLQMFSLSIIFAGAAYLARIERAKGDEHTNVHSNEAGSVFSFFMFILYAVFAIVLVRHRNIVIKE 161          
BLAST of NO22G00880 vs. NCBI_GenBank
Match: ETI53726.1 (hypothetical protein F443_03377 [Phytophthora parasitica P1569])

HSP 1 Score: 87.0 bits (214), Expect = 5.500e-14
Identity = 54/150 (36.00%), Postives = 83/150 (55.33%), Query Frame = 0
Query:    4 DDKRKIIAYLWYLNALLSIAYVIVAIAAAANQKDLETATTNHAAGFAAIWSMIILFLIIVGGTITMKRLKTPIATGVFLGASIMFSQMELLLFAIFVGLA-----KMSNGD--VERRSNNAMAVFSFFLFVLYAVFSVCLFFLRHYVIDD 147
            ++ + +I YLW++  L    Y I AI AA N  D E  + + + GF  +W+MI++  + VGGT+ M++ +TP+A G  +G  +M S     L  IF G A     + + GD      SN A +VFSFF+FV Y  F++ L   R+ VI +
Sbjct:   17 NNPKMLITYLWFVTMLFGFMYAIAAIVAAVN-NDGEGESDSKSLGFVGVWAMILIIALSVGGTMVMRKHQTPLAVGFLIGVVLMMSLQMFSLSIIFAGAAYLARIERAKGDEHTNVHSNEAGSVFSFFMFVCYLAFTIVLVRHRNIVIKE 165          
The following BLAST results are available for this feature:
BLAST of NO22G00880 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM21453.15.400e-7087.82hypothetical protein Naga_100019g4 [Nannochloropsi... [more]
XP_005854322.17.200e-2241.55hypothetical protein NGA_0208701 [Nannochloropsis ... [more]
EWM30061.17.200e-2241.55hypothetical protein Naga_100170g6 [Nannochloropsi... [more]
CCI41851.14.500e-1636.94unnamed protein product [Albugo candida][more]
POM73153.12.900e-1536.00Hypothetical protein PHPALM_10022 [Phytophthora pa... [more]
CBJ49273.13.800e-1536.05conserved unknown protein [Ectocarpus siliculosus][more]
CCA23673.13.800e-1537.75conserved hypothetical protein [Albugo laibachii N... [more]
CCA25334.13.800e-1537.75conserved hypothetical protein [Albugo laibachii N... [more]
XP_009520078.15.000e-1537.33hypothetical protein PHYSODRAFT_484403 [Phytophtho... [more]
ETI53726.15.500e-1436.00hypothetical protein F443_03377 [Phytophthora para... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL033nonsL033Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL032nonsL032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR025ncniR025Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR078ngnoR078Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR077ngnoR077Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR075ngnoR075Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004172NSK004172Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO22G00880.1NO22G00880.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595565gene_7086Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100019g4gene8985Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO22G00880.1NO22G00880.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO22G00880 ID=NO22G00880|Name=NO22G00880|organism=Nannochloropsis oceanica|type=gene|length=1935bp
TCATGACTGTCGATGTGGTATGGAAAGCATGGGCGGATGAGATGCAGTGT
ATAGATAGTGGTTCTTCATTTTTCTACGCGCGGAAAGCAGAATTTGCGCG
TGATGGGAGCAGCTGACGAGCTCACAAAGGGGGCATGGTTTCTCATCATG
GGCACATCACATACTTTACTCTCCATATACGTACTGACATGTCTGGCTCC
GCCTTTGCAGGCACATGCTGGGAAGGTGTATACGAGCCTTCCCATCAGAG
GCGGTCATGCTCGCCGAACGTGCGCGTTATTGGCGAGGCGTTCTGTTGCC
GGGCGTGAGGCGTCTGCATGTGCCCAATTTTGAAAAGTTGGGACGCGCAC
CCTCACACCACTGCTTTGCGACACGCCACCATAGGCATAGGCATCATAGG
CATGTATTTATACTCTCACACATAGAACCCTCTCCCTCCCCTTACCGTGC
GAGGCACAATTCTGGAAGGCGAGAGGGAAAAAGGATGCGTCTTGTCCTGT
TCATATTATTTTGCCTTTGGCTTCAGCCCCTCAACTCATGCGTGCATCAC
ATCATACGATTCCCTTCCCAGGCCTCTTCACTCTCCACTGACCTTTACAA
GACACAAGAACCATGGTGTGCGACGACAAGCGCAAAATCATTGCGTACCT
TTGGTACTTGAACGCCCTCCTCTCCATCGCCTATGTCATCGTGGCCATCG
CCGCCGCGGCCAACCAGAAGGACCTCGAGACAGCCACGACCAACCACGCC
GCGGGCTTTGCGGCCATTTGGTCCATGATCATTCTCTTCCTCATCATTGT
TGGCGGTACCATCACCATGAAGAGGgtacgtgaagtaatggggtgaaagt
gggggaggaaagggaatagggtgcagaggctttgacatgagacccggatg
agagagtgcaccctttctgctgcaaagcatcaccctaccaaaacatcacg
acggattctttctcgggtgcttccatagtgtgctttacagagggccagaa
gctatctttgccgccttgtgtgtgagtctgacaagcacatcggtgaactg
accctccctccctccctcacccgcgcagCTCAAGACCCCCATCGCCACCG
GGGTGTTTCTGGGCGCCTCCATCATGTTCTCCCAAATGGAGCTGCTGCTT
TTCGCCATCTTTGTGGGACTGGCCAAGATGTCGAATGGAGATGTGGAAAG
GAGGAGCAACAACGCCATGGCTGTGTTTTCCTTCTTCTTGTTCGTATTGT
ACGCGGTCTTCTCCGTATGTCTCTTTTTCCTCCGGCACTATGTCATCGAC
Ggtatggaggaagcgaggaagtgagggaggaagggagaggggggggggtc
atgcttaaaccactaggagagatggtatattgtttttcgctcacacctcg
tcctaatcccctttctttctccctccttcccctcccccactacccccagA
CTCGCCTGCCCCCCCTGAGAATAATTTTGCCTAAATCAAAGTTAGCAGCA
ACAGCAGCAGCAGGAGTAGTGGAAGCAGCACTATAGTGCTGTAGTAGCAG
GGCCTGTTGTTGCCGCGCCAAGGGGGGGAGGAAGGAAGAAAGTAGGGATG
AAGGGCATGAGTTTAATGTGTGTGTGCGTCACAAGAGAAGATGCAAATAA
GAAGACGAAGGGAAAAGAATAAGAGATGGGCAGCAATCATGATTGTGTAG
GCGCCATAAGGTTCTTTCAATCAAGCAGTGCGCGTGATACCCCGAGGGGG
AGGCGGGGGAATAGTGCAAACCAATAACGAACTTGTGTGTACGTGTATCT
ATCCGTCCTCCCAGCGCAAATCAAAGCATCAAAACCAGCATATATATACA
GCATGCAGCAAAGAATAGAAGGAAGAAAGAGATGCTTAAGGAAAGCGCTA
ATACCCCCCAAATTAAGGAGAATTACACTTCCTCA
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protein sequence of NO22G00880.1

>NO22G00880.1-protein ID=NO22G00880.1-protein|Name=NO22G00880.1|organism=Nannochloropsis oceanica|type=polypeptide|length=157bp
MVCDDKRKIIAYLWYLNALLSIAYVIVAIAAAANQKDLETATTNHAAGFA
AIWSMIILFLIIVGGTITMKRLKTPIATGVFLGASIMFSQMELLLFAIFV
GLAKMSNGDVERRSNNAMAVFSFFLFVLYAVFSVCLFFLRHYVIDDSPAP
PENNFA*
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Synonyms
Publications