NO22G00880.1, NO22G00880.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO22G00880.1
Unique NameNO22G00880.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1534
Alignment locationchr22:277637..279571 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:277637..279571 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO22G00880.1 vs.
Match: EWM21453.1 (hypothetical protein Naga_100019g4 [Nannochloropsis gaditana])

HSP 1 Score: 273.1 bits (697), Expect = 5.400e-70
Identity = 137/156 (87.82%), Postives = 151/156 (96.79%), Query Frame = 0 
Query:    1 MVCDDKRKIIAYLWYLNALLSIAYVIVAIAAAANQKDLETATTNHAAGFAAIWSMIILFLIIVGGTITMKRLKTPIATGVFLGASIMFSQMELLLFAIFVGLAKMSNGDVERRSNNAMAVFSFFLFVLYAVFSVCLFFLRHYVIDDSPAPPENNFA 157
            MVCDDKRK+IAYLWYLNALLSIAYV+VAIAAAANQKDLETATTNHAAGFAAIWSM+ILFLII+GGTITMKRLKTPIATGVFLGA IM+SQM+LLLFAIFVGLA+ S+GDVERRSNNAMAVF+FFLF+LY VFSVCL+F RHYVIDD+PAP EN++A
Sbjct:   34 MVCDDKRKVIAYLWYLNALLSIAYVVVAIAAAANQKDLETATTNHAAGFAAIWSMLILFLIIIGGTITMKRLKTPIATGVFLGACIMYSQMQLLLFAIFVGLAQTSSGDVERRSNNAMAVFAFFLFILYTVFSVCLYFFRHYVIDDAPAPAENSYA 189
The following BLAST results are available for this feature:
BLAST of NO22G00880.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21453.15.400e-7087.82hypothetical protein Naga_100019g4 [Nannochloropsi... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO22G00880NO22G00880Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO22G00880.1NO22G00880.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO22G00880.1.cds1NO22G00880.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G00880.1.cds2NO22G00880.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G00880.1.cds3NO22G00880.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO22G00880.1 ID=NO22G00880.1|Name=NO22G00880.1|organism=Nannochloropsis oceanica|type=mRNA|length=1534bp
TCATGACTGTCGATGTGGTATGGAAAGCATGGGCGGATGAGATGCAGTGT
ATAGATAGTGGTTCTTCATTTTTCTACGCGCGGAAAGCAGAATTTGCGCG
TGATGGGAGCAGCTGACGAGCTCACAAAGGGGGCATGGTTTCTCATCATG
GGCACATCACATACTTTACTCTCCATATACGTACTGACATGTCTGGCTCC
GCCTTTGCAGGCACATGCTGGGAAGGTGTATACGAGCCTTCCCATCAGAG
GCGGTCATGCTCGCCGAACGTGCGCGTTATTGGCGAGGCGTTCTGTTGCC
GGGCGTGAGGCGTCTGCATGTGCCCAATTTTGAAAAGTTGGGACGCGCAC
CCTCACACCACTGCTTTGCGACACGCCACCATAGGCATAGGCATCATAGG
CATGTATTTATACTCTCACACATAGAACCCTCTCCCTCCCCTTACCGTGC
GAGGCACAATTCTGGAAGGCGAGAGGGAAAAAGGATGCGTCTTGTCCTGT
TCATATTATTTTGCCTTTGGCTTCAGCCCCTCAACTCATGCGTGCATCAC
ATCATACGATTCCCTTCCCAGGCCTCTTCACTCTCCACTGACCTTTACAA
GACACAAGAACCATGGTGTGCGACGACAAGCGCAAAATCATTGCGTACCT
TTGGTACTTGAACGCCCTCCTCTCCATCGCCTATGTCATCGTGGCCATCG
CCGCCGCGGCCAACCAGAAGGACCTCGAGACAGCCACGACCAACCACGCC
GCGGGCTTTGCGGCCATTTGGTCCATGATCATTCTCTTCCTCATCATTGT
TGGCGGTACCATCACCATGAAGAGGCTCAAGACCCCCATCGCCACCGGGG
TGTTTCTGGGCGCCTCCATCATGTTCTCCCAAATGGAGCTGCTGCTTTTC
GCCATCTTTGTGGGACTGGCCAAGATGTCGAATGGAGATGTGGAAAGGAG
GAGCAACAACGCCATGGCTGTGTTTTCCTTCTTCTTGTTCGTATTGTACG
CGGTCTTCTCCGTATGTCTCTTTTTCCTCCGGCACTATGTCATCGACGAC
TCGCCTGCCCCCCCTGAGAATAATTTTGCCTAAATCAAAGTTAGCAGCAA
CAGCAGCAGCAGGAGTAGTGGAAGCAGCACTATAGTGCTGTAGTAGCAGG
GCCTGTTGTTGCCGCGCCAAGGGGGGGAGGAAGGAAGAAAGTAGGGATGA
AGGGCATGAGTTTAATGTGTGTGTGCGTCACAAGAGAAGATGCAAATAAG
AAGACGAAGGGAAAAGAATAAGAGATGGGCAGCAATCATGATTGTGTAGG
CGCCATAAGGTTCTTTCAATCAAGCAGTGCGCGTGATACCCCGAGGGGGA
GGCGGGGGAATAGTGCAAACCAATAACGAACTTGTGTGTACGTGTATCTA
TCCGTCCTCCCAGCGCAAATCAAAGCATCAAAACCAGCATATATATACAG
CATGCAGCAAAGAATAGAAGGAAGAAAGAGATGCTTAAGGAAAGCGCTAA
TACCCCCCAAATTAAGGAGAATTACACTTCCTCA
back to top

protein sequence of NO22G00880.1

>NO22G00880.1-protein ID=NO22G00880.1-protein|Name=NO22G00880.1|organism=Nannochloropsis oceanica|type=polypeptide|length=157bp
MVCDDKRKIIAYLWYLNALLSIAYVIVAIAAAANQKDLETATTNHAAGFA
AIWSMIILFLIIVGGTITMKRLKTPIATGVFLGASIMFSQMELLLFAIFV
GLAKMSNGDVERRSNNAMAVFSFFLFVLYAVFSVCLFFLRHYVIDDSPAP
PENNFA*
back to top

mRNA from alignment at chr22:277637..279571-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO22G00880.1 ID=NO22G00880.1|Name=NO22G00880.1|organism=Nannochloropsis oceanica|type=mRNA|length=1935bp|location=Sequence derived from alignment at chr22:277637..279571- (Nannochloropsis oceanica)
TCATGACTGTCGATGTGGTATGGAAAGCATGGGCGGATGAGATGCAGTGT
ATAGATAGTGGTTCTTCATTTTTCTACGCGCGGAAAGCAGAATTTGCGCG
TGATGGGAGCAGCTGACGAGCTCACAAAGGGGGCATGGTTTCTCATCATG
GGCACATCACATACTTTACTCTCCATATACGTACTGACATGTCTGGCTCC
GCCTTTGCAGGCACATGCTGGGAAGGTGTATACGAGCCTTCCCATCAGAG
GCGGTCATGCTCGCCGAACGTGCGCGTTATTGGCGAGGCGTTCTGTTGCC
GGGCGTGAGGCGTCTGCATGTGCCCAATTTTGAAAAGTTGGGACGCGCAC
CCTCACACCACTGCTTTGCGACACGCCACCATAGGCATAGGCATCATAGG
CATGTATTTATACTCTCACACATAGAACCCTCTCCCTCCCCTTACCGTGC
GAGGCACAATTCTGGAAGGCGAGAGGGAAAAAGGATGCGTCTTGTCCTGT
TCATATTATTTTGCCTTTGGCTTCAGCCCCTCAACTCATGCGTGCATCAC
ATCATACGATTCCCTTCCCAGGCCTCTTCACTCTCCACTGACCTTTACAA
GACACAAGAACCATGGTGTGCGACGACAAGCGCAAAATCATTGCGTACCT
TTGGTACTTGAACGCCCTCCTCTCCATCGCCTATGTCATCGTGGCCATCG
CCGCCGCGGCCAACCAGAAGGACCTCGAGACAGCCACGACCAACCACGCC
GCGGGCTTTGCGGCCATTTGGTCCATGATCATTCTCTTCCTCATCATTGT
TGGCGGTACCATCACCATGAAGAGGGTACGTGAAGTAATGGGGTGAAAGT
GGGGGAGGAAAGGGAATAGGGTGCAGAGGCTTTGACATGAGACCCGGATG
AGAGAGTGCACCCTTTCTGCTGCAAAGCATCACCCTACCAAAACATCACG
ACGGATTCTTTCTCGGGTGCTTCCATAGTGTGCTTTACAGAGGGCCAGAA
GCTATCTTTGCCGCCTTGTGTGTGAGTCTGACAAGCACATCGGTGAACTG
ACCCTCCCTCCCTCCCTCACCCGCGCAGCTCAAGACCCCCATCGCCACCG
GGGTGTTTCTGGGCGCCTCCATCATGTTCTCCCAAATGGAGCTGCTGCTT
TTCGCCATCTTTGTGGGACTGGCCAAGATGTCGAATGGAGATGTGGAAAG
GAGGAGCAACAACGCCATGGCTGTGTTTTCCTTCTTCTTGTTCGTATTGT
ACGCGGTCTTCTCCGTATGTCTCTTTTTCCTCCGGCACTATGTCATCGAC
GGTATGGAGGAAGCGAGGAAGTGAGGGAGGAAGGGAGAGGGGGGGGGGTC
ATGCTTAAACCACTAGGAGAGATGGTATATTGTTTTTCGCTCACACCTCG
TCCTAATCCCCTTTCTTTCTCCCTCCTTCCCCTCCCCCACTACCCCCAGA
CTCGCCTGCCCCCCCTGAGAATAATTTTGCCTAAATCAAAGTTAGCAGCA
ACAGCAGCAGCAGGAGTAGTGGAAGCAGCACTATAGTGCTGTAGTAGCAG
GGCCTGTTGTTGCCGCGCCAAGGGGGGGAGGAAGGAAGAAAGTAGGGATG
AAGGGCATGAGTTTAATGTGTGTGTGCGTCACAAGAGAAGATGCAAATAA
GAAGACGAAGGGAAAAGAATAAGAGATGGGCAGCAATCATGATTGTGTAG
GCGCCATAAGGTTCTTTCAATCAAGCAGTGCGCGTGATACCCCGAGGGGG
AGGCGGGGGAATAGTGCAAACCAATAACGAACTTGTGTGTACGTGTATCT
ATCCGTCCTCCCAGCGCAAATCAAAGCATCAAAACCAGCATATATATACA
GCATGCAGCAAAGAATAGAAGGAAGAAAGAGATGCTTAAGGAAAGCGCTA
ATACCCCCCAAATTAAGGAGAATTACACTTCCTCA
back to top

Coding sequence (CDS) from alignment at chr22:277637..279571-

>NO22G00880.1 ID=NO22G00880.1|Name=NO22G00880.1|organism=Nannochloropsis oceanica|type=CDS|length=471bp|location=Sequence derived from alignment at chr22:277637..279571- (Nannochloropsis oceanica)
ATGGTGTGCGACGACAAGCGCAAAATCATTGCGTACCTTTGGTACTTGAA
CGCCCTCCTCTCCATCGCCTATGTCATCGTGGCCATCGCCGCCGCGGCCA
ACCAGAAGGACCTCGAGACAGCCACGACCAACCACGCCGCGGGCTTTGCG
GCCATTTGGTCCATGATCATTCTCTTCCTCATCATTGTTGGCGGTACCAT
CACCATGAAGAGGCTCAAGACCCCCATCGCCACCGGGGTGTTTCTGGGCG
CCTCCATCATGTTCTCCCAAATGGAGCTGCTGCTTTTCGCCATCTTTGTG
GGACTGGCCAAGATGTCGAATGGAGATGTGGAAAGGAGGAGCAACAACGC
CATGGCTGTGTTTTCCTTCTTCTTGTTCGTATTGTACGCGGTCTTCTCCG
TATGTCTCTTTTTCCTCCGGCACTATGTCATCGACGACTCGCCTGCCCCC
CCTGAGAATAATTTTGCCTAA
back to top
Synonyms
Publications