NO17G02430, NO17G02430 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO17G02430 vs. NCBI_GenBank
Match: XP_005854034.1 (hypothetical protein NGA_0458600 [Nannochloropsis gaditana CCMP526] >EKU22327.1 hypothetical protein NGA_0458600 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 286.6 bits (732), Expect = 1.300e-73 Identity = 181/448 (40.40%), Postives = 257/448 (57.37%), Query Frame = 0 Query: 4 FKAGSRVVLADNGYWRQASVPLPEGLKAGDVVTVELPAKPKRARMTLRDVKEEVELRV-------GGAEEMIQRQLLMFNAVDFAGDLIPKLSTPS--PSPLQLLVIGGDKAGKSTFIQTLVSVLNSAETDSTPPPDASSLQPTTTLTRTDLGNTNTS-RFHTPLQACAVEFPSTDALFGMEEEE--LKVAFGTAHAVLFFIAAHEIESSSKKTEDLQRLFLLLRSLPLSPLIVLTHMDKVEPLIALDPSNWTLDKVARLRRRVCKLFDVTWAQTFVFVPYSAPKPVVTATTTAKASMRTDVMLRGESGGHFPDLREEXXXXXXXXXXXXXXRSFDIDRSVLFIAKAAFDAAKGKVEANTCIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAMGR-VAEKTTSTPL--VTVVKNSP-----VARQETVELDDSFSSNFQPLT 432 F+ G++V + DNGYW+++SV +P+GL GDVVTVEL A+PKR++MTL+DVK ++ELRV GG E +I RQ + F+ +DFAGDL P +PS +PL L ++G ++AGK+TF+++L +VL SAETD PP +S+ PTT +TR +L S RF PL A E PS+ L + ++ ++ H L F+AA E+E++ K LQ L++ +PL+VLT MDKVEPL+A DP NW+L KV+ +RRR + V+WA T VFVPY+AP+P + AKASMRTDV+++G+ D+RE+ RSF ID+ VLFIAKA + A+ K+E +G + T+TP +++ K +P RQ+TVELD SFSSNF L+ Sbjct: 117 FEPGTKVFMPDNGYWKESSVSVPDGLSPGDVVTVELLAEPKRSKMTLKDVKADIELRVTGPSVTPGGPEMIILRQYVAFDGIDFAGDLFPIPLSPSLGTAPLLLYILGAEQAGKTTFVESLRNVLASAETDM--PPPQTSIVPTTEITRLELNAEAISPRFRAPLTARVTEIPSSMVLAPTDADKASMERLLPAGHGALVFVAADEVETAPAKMAGLQASIQQLKAQNFNPLVVLTRMDKVEPLVAADPFNWSLKKVSHVRRRASQCLGVSWANTLVFVPYAAPRPAM-RPEVAKASMRTDVIIKGKKASSILDMRED------TVREEGMERSFAIDKLVLFIAKAGLEVAQEKMEGRV----------------------------RRSSSAGSAGLGTWTGGRITATPKTDMSMTKTAPSDAMLATRQQTVELDGSFSSNFPTLS 527
BLAST of NO17G02430 vs. NCBI_GenBank
Match: EWM24170.1 (hypothetical protein Naga_100296g5 [Nannochloropsis gaditana]) HSP 1 Score: 139.8 bits (351), Expect = 2.000e-29 Identity = 75/158 (47.47%), Postives = 107/158 (67.72%), Query Frame = 0 Query: 4 FKAGSRVVLADNGYWRQASVPLPEGLKAGDVVTVELPAKPKRARMTLRDVKEEVELRV-------GGAEEMIQRQLLMFNAVDFAGDLIPKLSTPS--PSPLQLLVIGGDKAGKSTFIQTLVSVLNSAETDSTPPPDASSLQPTTTLTRTDLGNTNTS 153 F+ G++V + DNGYW+++SV +P+GL GDVVTVEL A+PKR++MTL+DVK ++ELRV GG E +I RQ + F+ +DFAGDL P +PS +PL L ++G ++AGK+TF+++L +VL SAETD PP D S R G+ +S Sbjct: 117 FEPGTKVFMPDNGYWKESSVSVPDGLSPGDVVTVELLAEPKRSKMTLKDVKADIELRVTGPSVTPGGPEMIILRQYVAFDGIDFAGDLFPIPLSPSLGTAPLLLYILGAEQAGKTTFVESLRNVLASAETDMPPPSDLDSTDHRDHSPRAQCGSDQSS 274 The following BLAST results are available for this feature:
BLAST of NO17G02430 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 2
Relationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO17G02430 ID=NO17G02430|Name=NO17G02430|organism=Nannochloropsis oceanica|type=gene|length=2840bpback to top protein sequence of NO17G02430.2 >NO17G02430.2-protein ID=NO17G02430.2-protein|Name=NO17G02430.2|organism=Nannochloropsis oceanica|type=polypeptide|length=436bpback to top protein sequence of NO17G02430.1 >NO17G02430.1-protein ID=NO17G02430.1-protein|Name=NO17G02430.1|organism=Nannochloropsis oceanica|type=polypeptide|length=539bpback to top Synonyms
Publications
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