Alignments
The following features are aligned
Aligned Feature Feature Type Alignment Location
chr17 genome chr17:714811..717650 -
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO17G02430.1 vs.
Match: XP_005854034.1 (hypothetical protein NGA_0458600 [Nannochloropsis gaditana CCMP526]; EKU22327.1 hypothetical protein NGA_0458600 [Nannochloropsis gaditana CCMP526])
HSP 1 Score: 342.4 bits (877), Expect = 2.500e-90
Identity = 229/558 (41.04%), Postives = 328/558 (58.78%), Query Frame = 0
Query: 1 MGGSCSRLPADQIHQPQPYKAADVKTKKSCPADGPGP----------IPPEETQQERGA--EGTAAGLSIHTRRTFRPKTTNKIGRKGALTLLRPSSLWAAGEATVLEVEVRVPVMTPFKAGSRVVLADNGYWRQASVPLPEGLKAGDVVTVELPAKPKRARMTLRDVKEEVELRV-------GGAEEMIQRQLLMFNAVDFAGDLIPKLSTPS--PSPLQLLVIGGDKAGKSTFIQTLVSVLNSAETDSTPPPDASSLQPTTTLTRTDLGNTNTS-RFHTPLQACAVEFPSTDALFGMEEEE--LKVAFGTAHAVLFFIAAHEIESSSKKTEDLQRLFLLLRSLPLSPLIVLTHMDKVEPLIALDPSNWTLDKVARLRRRVCKLFDVTWAQTFVFVPYSAPKPVVTATTTAKASMRTDVMLRGESGGHFPDLREEGGGEGGGGEGGGGGRSFDIDRSVLFIAKAAFDAAKGKVEANTCISSSSSSNSTTNSSSISGGSSSSSSSSSSKVVAATPAMGRVAEKTTSTPLVTVVKNSPVARQETVELDDSFSSNFQPLT 535
MGG CSRLP +QI+ PQ +++ +K + CP G + EE +Q A + + RR FR +TTNKI K ++LLRP+ L+AAG+ L+VEV+VP+ F+ G++V + DNGYW+++SV +P+GL GDVVTVEL A+PKR++MTL+DVK ++ELRV GG E +I RQ + F+ +DFAGDL P +PS +PL L ++G ++AGK+TF+++L +VL SAETD PP +S+ PTT +TR +L S RF PL A E PS+ L + ++ ++ H L F+AA E+E++ K LQ L++ +PL+VLT MDKVEPL+A DP NW+L KV+ +RRR + V+WA T VFVPY+AP+P + AKASMRTDV+++G+ D+RE+ E G RSF ID+ VLFIAKA + A+ K+E SSS+ S + +GG +++ + + P+ +A RQ+TVELD SFSSNF L+
Sbjct: 1 MGGRCSRLPDEQINTPQVPRSSRIK--EDCPIHGKNGFIARSSSGDNVVDEEDRQSSHARKQDVLQKTRLPLRRAFRSRTTNKISGKAEISLLRPAHLYAAGDVAALQVEVQVPIHKSFEPGTKVFMPDNGYWKESSVSVPDGLSPGDVVTVELLAEPKRSKMTLKDVKADIELRVTGPSVTPGGPEMIILRQYVAFDGIDFAGDLFPIPLSPSLGTAPLLLYILGAEQAGKTTFVESLRNVLASAETDM--PPPQTSIVPTTEITRLELNAEAISPRFRAPLTARVTEIPSSMVLAPTDADKASMERLLPAGHGALVFVAADEVETAPAKMAGLQASIQQLKAQNFNPLVVLTRMDKVEPLVAADPFNWSLKKVSHVRRRASQCLGVSWANTLVFVPYAAPRPAM-RPEVAKASMRTDVIIKGKKASSILDMREDTVRE------EGMERSFAIDKLVLFIAKAGLEVAQEKMEGRVRRSSSAGS---AGLGTWTGGRITATPKTDMSMTKTAPSDAMLA-----------------TRQQTVELDGSFSSNFPTLS 527
The following BLAST results are available for this feature:
BLAST of NO17G02430.1 vs.
Analysis Date: 2017-10-25 (
Homology annotation for N. oceanica IMET1 )
Total hits: 1
200 400 600 800 1000 1200 1400 1600 1800 2000 2200 2400 Expect = 2.50e-90 / Id = 41.04 Sequence XP_005854034.1
Match Name E-value Identity Description
XP_005854034.1 2.500e-90 41.04 hypothetical protein NGA_0458600 [Nannochloropsis ... [more]
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Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence
>NO17G02430.1 ID=NO17G02430.1|Name=NO17G02430.1|organism=Nannochloropsis oceanica|type=mRNA|length=2402bp TAATCACGCCACCTCTATCACCCCCGATCACACCCCAACGGCATCCGACC AGTTGCCTTCCTTTCGGCCGCCGCAATAAATCTAATGTATTCTACGCCAT GACTATCAATTGAGCAGCATTCTGCAGGCAAGGCTAAGCTTTTTAAAATA TGGTCATGGCGCTTTTTGTTTCTCGTGTATACAAGTGCGGAAGAAGTCCC TTGGGTTGTATCTGTCAAATCAAGCTGGCACTTCTTTCCGCCAGGGACGC GTTTGATTGAACGGAACCTCCGTAATTGTCCTCCCCCTTAACAAAATGCC GGAGGACATTGACTCCGTGTTATAACAGGAAGCATTTACCTTTCTCTGGC CCCGTCGTCGTATGACTCTTTTTTAATCACGACCTCTCAACCTCATTCCC CCCTCTCCCCTTCCCCCCACGCGCTTCGGAATGGCTACCAGCAGTGAGTC CCCGATCAAGCTTCTCTGCGCTTTTCCTCGTCTCCTAGCCAGCAAAGCCA TTCTTCACCCTAAGCGACATACACGAGTACCATGGGTGGATCTTGCTCGC GCCTTCCGGCTGACCAAATCCATCAGCCCCAGCCCTACAAGGCAGCTGAT GTAAAGACGAAGAAAAGCTGTCCTGCCGATGGTCCCGGCCCAATCCCCCC TGAGGAGACACAGCAGGAGCGCGGGGCAGAGGGAACAGCAGCAGGCCTCT CCATCCACACCCGCCGCACCTTTCGTCCCAAAACCACCAACAAGATCGGA CGTAAAGGTGCACTGACTCTGTTGCGGCCTTCCTCCCTCTGGGCAGCCGG AGAAGCTACAGTGTTGGAAGTGGAGGTCCGTGTGCCGGTTATGACGCCGT TTAAAGCAGGGTCGCGCGTGGTATTAGCTGACAACGGTTACTGGCGACAA GCAAGCGTCCCTCTTCCCGAAGGATTGAAAGCTGGAGACGTGGTGACAGT TGAGCTGCCAGCGAAACCCAAGCGTGCCCGAATGACCCTGAGGGATGTCA AGGAGGAGGTAGAGCTTCGAGTTGGAGGAGCGGAGGAAATGATTCAACGG CAGCTACTTATGTTCAATGCGGTTGATTTCGCTGGAGACCTGATACCCAA GCTCTCTACGCCGTCTCCCAGTCCTCTTCAACTTCTCGTGATCGGTGGGG ACAAAGCAGGCAAAAGCACCTTCATTCAAACTCTGGTCTCGGTGCTTAAC TCGGCTGAGACCGACTCCACCCCTCCCCCTGACGCCTCATCCCTCCAGCC TACCACCACCTTGACCCGCACCGACCTAGGCAACACCAACACCAGCCGTT TCCACACACCCCTCCAGGCCTGCGCCGTCGAATTTCCCTCCACCGATGCC CTATTTGGGATGGAGGAGGAAGAGCTGAAGGTCGCCTTCGGTACCGCCCA TGCCGTCCTCTTCTTCATCGCTGCCCATGAGATAGAGAGCTCCTCCAAGA AGACGGAAGACTTGCAACGCCTCTTCCTCCTCCTCCGATCCCTCCCTCTC TCTCCCCTCATCGTCCTCACGCACATGGACAAAGTTGAGCCATTGATAGC TCTGGATCCGTCCAACTGGACATTGGATAAAGTTGCGCGCCTCCGTCGTC GTGTCTGTAAACTTTTCGACGTTACTTGGGCACAGACTTTTGTTTTTGTG CCTTACTCTGCTCCTAAGCCCGTGGTAACGGCCACGACAACGGCCAAGGC GAGCATGCGTACTGACGTCATGTTGAGGGGGGAAAGCGGCGGGCACTTTC CGGATCTGCGGGAGGAGGGCGGGGGGGAGGGGGGAGGAGGGGAGGGAGGA GGGGGAGGGAGATCTTTTGATATTGATAGGTCGGTGTTGTTCATTGCGAA GGCGGCATTCGATGCCGCAAAGGGTAAGGTGGAGGCGAACACTTGCATCA GCAGCAGCAGCAGCAGTAACAGTACGACAAACTCTTCTAGCATCAGCGGC GGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAAGGTGGTGGCGGCGAC GCCGGCGATGGGAAGGGTGGCGGAAAAGACGACGTCTACGCCTCTCGTGA CGGTTGTGAAGAACAGCCCTGTGGCACGCCAGGAGACTGTGGAGTTGGAT GATTCGTTTTCTTCGAATTTTCAACCCCTAACTTTCTATAGGCGGTAGTG AAAAGAGGGCGGGAACGAAGGGACTTATGTAGGCGAGCTTTTTGTATTCT TGACGTTGCGGGGGGTAGAAAGGTGGTAGTGAGGTATTGTTTTTTCTATA TTGAGTTCTCCTTGAGCTGTAATGAGAGTGGAGGGGAGAGGAGGAGACCC GGAAATGGAAGACTTAGGCTAAGGCTTTGACTATGGCAATATGTATAAGT ATATATAACTTATATAAATATATAAGAGTACATATATATATATATATATA TG back to top protein sequence of NO17G02430.1
>NO17G02430.1-protein ID=NO17G02430.1-protein|Name=NO17G02430.1|organism=Nannochloropsis oceanica|type=polypeptide|length=539bp MGGSCSRLPADQIHQPQPYKAADVKTKKSCPADGPGPIPPEETQQERGAE GTAAGLSIHTRRTFRPKTTNKIGRKGALTLLRPSSLWAAGEATVLEVEVR VPVMTPFKAGSRVVLADNGYWRQASVPLPEGLKAGDVVTVELPAKPKRAR MTLRDVKEEVELRVGGAEEMIQRQLLMFNAVDFAGDLIPKLSTPSPSPLQ LLVIGGDKAGKSTFIQTLVSVLNSAETDSTPPPDASSLQPTTTLTRTDLG NTNTSRFHTPLQACAVEFPSTDALFGMEEEELKVAFGTAHAVLFFIAAHE IESSSKKTEDLQRLFLLLRSLPLSPLIVLTHMDKVEPLIALDPSNWTLDK VARLRRRVCKLFDVTWAQTFVFVPYSAPKPVVTATTTAKASMRTDVMLRG ESGGHFPDLREEGGGEGGGGEGGGGGRSFDIDRSVLFIAKAAFDAAKGKV EANTCISSSSSSNSTTNSSSISGGSSSSSSSSSSKVVAATPAMGRVAEKT TSTPLVTVVKNSPVARQETVELDDSFSSNFQPLTFYRR* back to top mRNA from alignment at chr17:714811..717650-
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO17G02430.1 ID=NO17G02430.1|Name=NO17G02430.1|organism=Nannochloropsis oceanica|type=mRNA|length=2840bp|location=Sequence derived from alignment at chr17:714811..717650- (Nannochloropsis oceanica) TAATCACGCCACCTCTATCACCCCCGATCACACCCCAACGGCATCCGACC
AGTTGCCTTCCTTTCGGCCGCCGCAATAAATCTAATGTATTCTACGCCAT
GACTATCAATTGAGCAGCATTCTGCAGGCAAGGCTAAGCTTTTTAAAATA
TGGTCATGGCGCTTTTTGTTTCTCGTGTATACAAGTGCGGAAGAAGTCCC
TTGGGTTGTATCTGTCAAATCAAGCTGGCACTTCTTTCCGCCAGGGACGC
GTTTGATTGAACGGAACCTCCGTAATTGTCCTCCCCCTTAACAAAATGCC
GGAGGACATTGACTCCGTGTTATAACAGGAAGCATTTACCTTTCTCTGGC
CCCGTCGTCGTATGACTCTTTTTTAATCACGACCTCTCAACCTCATTCCC
CCCTCTCCCCTTCCCCCCACGCGCTTCGGAATGGCTACCAGCAGTGAGTC
CCCGATCAAGCTTCTCTGCGCTTTTCCTCGTCTCCTAGCCAGCAAAGCCA
TTCTTCACCCTAAGCGACATACACGAGTACCATGGGTGGATCTTGCTCGC
GCCTTCCGGCTGACCAAATCCATCAGCCCCAG GTGCGTCTTTGTAAACCC
ACAGCCAAAGCAGAGAATAGGCAGCTTGTCTCTGTGCATAGAAGCAGAAC
AGCGCTTGCTTGTGGGGGGATGGATGCCGTGTCTATGAGCCCCTACTTTC
TCTCAACTCCTCGCCCAGAAGCTCTCTTCTCTCCTCTCCTCCCCGTCCTT
CCCCCCCCTTTCCTTTCCTTTCTCCCCTCACACTTCTCCTTTCTATCCCT
CCCTCCTTCTCCCTTCTCTCCATCATCATCCAACTTGAGGATACAGTCAG
ACTTTCCTATTCGTCAAGGCAATATCGGCAACTCGATCTTTCCTCTGTTG
AGCAACAGTCGGCGCTTTATGTGGCACATGCACCTCTCCTCTTACTCACT
TTCGCTTCTTCTCAACCTCATTCCCGAAACACTTCCTCCGTCCCTTAATC
CCCTTTTCATTCATTCGTAGCCCTACAAGGCAGCTGATGTAAAGACGAAG
AAAAGCTGTCCTGCCGATGGTCCCGGCCCAATCCCCCCTGAGGAGACACA
GCAGGAGCGCGGGGCAGAGGGAACAGCAGCAGGCCTCTCCATCCACACCC
GCCGCACCTTTCGTCCCAAAACCACCAACAAGATCGGACGTAAAGGTGCA
CTGACTCTGTTGCGGCCTTCCTCCCTCTGGGCAGCCGGAGAAGCTACAGT
GTTGGAAGTGGAGGTCCGTGTGCCGGTTATGACGCCGTTTAAAGCAGGGT
CGCGCGTGGTATTAGCTGACAACGGTTACTGGCGACAAGCAAGCGTCCCT
CTTCCCGAAGGATTGAAAGCTGGAGACGTGGTGACAGTTGAGCTGCCAGC
GAAACCCAAGCGTGCCCGAATGACCCTGAGGGATGTCAAGGAGGAGGTAG
AGCTTCGAGTTGGAGGAGCGGAGGAAATGATTCAACGGCAGCTACTTATG
TTCAATGCGGTTGATTTCGCTGGAGACCTGATACCCAAGCTCTCTACGCC
GTCTCCCAGTCCTCTTCAACTTCTCGTGATCGGTGGGGACAAAGCAGGCA
AAAGCACCTTCATTCAAACTCTGGTCTCGGTGCTTAACTCGGCTGAGACC
GACTCCACCCCTCCCCCTGACGCCTCATCCCTCCAGCCTACCACCACCTT
GACCCGCACCGACCTAGGCAACACCAACACCAGCCGTTTCCACACACCCC
TCCAGGCCTGCGCCGTCGAATTTCCCTCCACCGATGCCCTATTTGGGATG
GAGGAGGAAGAGCTGAAGGTCGCCTTCGGTACCGCCCATGCCGTCCTCTT
CTTCATCGCTGCCCATGAGATAGAGAGCTCCTCCAAGAAGACGGAAGACT
TGCAACGCCTCTTCCTCCTCCTCCGATCCCTCCCTCTCTCTCCCCTCATC
GTCCTCACGCACATGGACAAAGTTGAGCCATTGATAGCTCTGGATCCGTC
CAACTGGACATTGGATAAAGTTGCGCGCCTCCGTCGTCGTGTCTGTAAAC
TTTTCGACGTTACTTGGGCACAGACTTTTGTTTTTGTGCCTTACTCTGCT
CCTAAGCCCGTGGTAACGGCCACGACAACGGCCAAGGCGAGCATGCGTAC
TGACGTCATGTTGAGGGGGGAAAGCGGCGGGCACTTTCCGGATCTGCGGG
AGGAGGGCGGGGGGGAGGGGGGAGGAGGGGAGGGAGGAGGGGGAGGGAGA
TCTTTTGATATTGATAGGTCGGTGTTGTTCATTGCGAAGGCGGCATTCGA
TGCCGCAAAGGGTAAGGTGGAGGCGAACACTTGCATCAGCAGCAGCAGCA
GCAGTAACAGTACGACAAACTCTTCTAGCATCAGCGGCGGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAAGGTGGTGGCGGCGACGCCGGCGATGGG
AAGGGTGGCGGAAAAGACGACGTCTACGCCTCTCGTGACGGTTGTGAAGA
ACAGCCCTGTGGCACGCCAGGAGACTGTGGAGTTGGATGATTCGTTTTCT
TCGAATTTTCAACCCCTAACTTTCTATAGGCGGTAG TGAAAAGAGGGCGG
GAACGAAGGGACTTATGTAGGCGAGCTTTTTGTATTCTTGACGTTGCGGG
GGGTAGAAAGGTGGTAGTGAGGTATTGTTTTTTCTATATTGAGTTCTCCT
TGAGCTGTAATGAGAGTGGAGGGGAGAGGAGGAGACCCGGAAATGGAAGA
CTTAGGCTAAGGCTTTGACTATGGCAATATGTATAAGTATATATAACTTA
TATAAATATATAAGAGTACATATATATATATATATATATG back to top Coding sequence (CDS) from alignment at chr17:714811..717650-
>NO17G02430.1 ID=NO17G02430.1|Name=NO17G02430.1|organism=Nannochloropsis oceanica|type=CDS|length=1617bp|location=Sequence derived from alignment at chr17:714811..717650- (Nannochloropsis oceanica) ATGGGTGGATCTTGCTCGCGCCTTCCGGCTGACCAAATCCATCAGCCCCA GCCCTACAAGGCAGCTGATGTAAAGACGAAGAAAAGCTGTCCTGCCGATG GTCCCGGCCCAATCCCCCCTGAGGAGACACAGCAGGAGCGCGGGGCAGAG GGAACAGCAGCAGGCCTCTCCATCCACACCCGCCGCACCTTTCGTCCCAA AACCACCAACAAGATCGGACGTAAAGGTGCACTGACTCTGTTGCGGCCTT CCTCCCTCTGGGCAGCCGGAGAAGCTACAGTGTTGGAAGTGGAGGTCCGT GTGCCGGTTATGACGCCGTTTAAAGCAGGGTCGCGCGTGGTATTAGCTGA CAACGGTTACTGGCGACAAGCAAGCGTCCCTCTTCCCGAAGGATTGAAAG CTGGAGACGTGGTGACAGTTGAGCTGCCAGCGAAACCCAAGCGTGCCCGA ATGACCCTGAGGGATGTCAAGGAGGAGGTAGAGCTTCGAGTTGGAGGAGC GGAGGAAATGATTCAACGGCAGCTACTTATGTTCAATGCGGTTGATTTCG CTGGAGACCTGATACCCAAGCTCTCTACGCCGTCTCCCAGTCCTCTTCAA CTTCTCGTGATCGGTGGGGACAAAGCAGGCAAAAGCACCTTCATTCAAAC TCTGGTCTCGGTGCTTAACTCGGCTGAGACCGACTCCACCCCTCCCCCTG ACGCCTCATCCCTCCAGCCTACCACCACCTTGACCCGCACCGACCTAGGC AACACCAACACCAGCCGTTTCCACACACCCCTCCAGGCCTGCGCCGTCGA ATTTCCCTCCACCGATGCCCTATTTGGGATGGAGGAGGAAGAGCTGAAGG TCGCCTTCGGTACCGCCCATGCCGTCCTCTTCTTCATCGCTGCCCATGAG ATAGAGAGCTCCTCCAAGAAGACGGAAGACTTGCAACGCCTCTTCCTCCT CCTCCGATCCCTCCCTCTCTCTCCCCTCATCGTCCTCACGCACATGGACA AAGTTGAGCCATTGATAGCTCTGGATCCGTCCAACTGGACATTGGATAAA GTTGCGCGCCTCCGTCGTCGTGTCTGTAAACTTTTCGACGTTACTTGGGC ACAGACTTTTGTTTTTGTGCCTTACTCTGCTCCTAAGCCCGTGGTAACGG CCACGACAACGGCCAAGGCGAGCATGCGTACTGACGTCATGTTGAGGGGG GAAAGCGGCGGGCACTTTCCGGATCTGCGGGAGGAGGGCGGGGGGGAGGG GGGAGGAGGGGAGGGAGGAGGGGGAGGGAGATCTTTTGATATTGATAGGT CGGTGTTGTTCATTGCGAAGGCGGCATTCGATGCCGCAAAGGGTAAGGTG GAGGCGAACACTTGCATCAGCAGCAGCAGCAGCAGTAACAGTACGACAAA CTCTTCTAGCATCAGCGGCGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA GCAAGGTGGTGGCGGCGACGCCGGCGATGGGAAGGGTGGCGGAAAAGACG ACGTCTACGCCTCTCGTGACGGTTGTGAAGAACAGCCCTGTGGCACGCCA GGAGACTGTGGAGTTGGATGATTCGTTTTCTTCGAATTTTCAACCCCTAA CTTTCTATAGGCGGTAG back to top