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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr17 | genome | chr17:714811..717650 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO17G02430.1 vs.
Match: XP_005854034.1 (hypothetical protein NGA_0458600 [Nannochloropsis gaditana CCMP526]; EKU22327.1 hypothetical protein NGA_0458600 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 342.4 bits (877), Expect = 2.500e-90 Identity = 229/558 (41.04%), Postives = 328/558 (58.78%), Query Frame = 0
Query: 1 MGGSCSRLPADQIHQPQPYKAADVKTKKSCPADGPGP----------IPPEETQQERGA--EGTAAGLSIHTRRTFRPKTTNKIGRKGALTLLRPSSLWAAGEATVLEVEVRVPVMTPFKAGSRVVLADNGYWRQASVPLPEGLKAGDVVTVELPAKPKRARMTLRDVKEEVELRV-------GGAEEMIQRQLLMFNAVDFAGDLIPKLSTPS--PSPLQLLVIGGDKAGKSTFIQTLVSVLNSAETDSTPPPDASSLQPTTTLTRTDLGNTNTS-RFHTPLQACAVEFPSTDALFGMEEEE--LKVAFGTAHAVLFFIAAHEIESSSKKTEDLQRLFLLLRSLPLSPLIVLTHMDKVEPLIALDPSNWTLDKVARLRRRVCKLFDVTWAQTFVFVPYSAPKPVVTATTTAKASMRTDVMLRGESGGHFPDLREEGGGEGGGGEGGGGGRSFDIDRSVLFIAKAAFDAAKGKVEANTCISSSSSSNSTTNSSSISGGSSSSSSSSSSKVVAATPAMGRVAEKTTSTPLVTVVKNSPVARQETVELDDSFSSNFQPLT 535
MGG CSRLP +QI+ PQ +++ +K + CP G + EE +Q A + + RR FR +TTNKI K ++LLRP+ L+AAG+ L+VEV+VP+ F+ G++V + DNGYW+++SV +P+GL GDVVTVEL A+PKR++MTL+DVK ++ELRV GG E +I RQ + F+ +DFAGDL P +PS +PL L ++G ++AGK+TF+++L +VL SAETD PP +S+ PTT +TR +L S RF PL A E PS+ L + ++ ++ H L F+AA E+E++ K LQ L++ +PL+VLT MDKVEPL+A DP NW+L KV+ +RRR + V+WA T VFVPY+AP+P + AKASMRTDV+++G+ D+RE+ E G RSF ID+ VLFIAKA + A+ K+E SSS+ S + +GG +++ + + P+ +A RQ+TVELD SFSSNF L+
Sbjct: 1 MGGRCSRLPDEQINTPQVPRSSRIK--EDCPIHGKNGFIARSSSGDNVVDEEDRQSSHARKQDVLQKTRLPLRRAFRSRTTNKISGKAEISLLRPAHLYAAGDVAALQVEVQVPIHKSFEPGTKVFMPDNGYWKESSVSVPDGLSPGDVVTVELLAEPKRSKMTLKDVKADIELRVTGPSVTPGGPEMIILRQYVAFDGIDFAGDLFPIPLSPSLGTAPLLLYILGAEQAGKTTFVESLRNVLASAETDM--PPPQTSIVPTTEITRLELNAEAISPRFRAPLTARVTEIPSSMVLAPTDADKASMERLLPAGHGALVFVAADEVETAPAKMAGLQASIQQLKAQNFNPLVVLTRMDKVEPLVAADPFNWSLKKVSHVRRRASQCLGVSWANTLVFVPYAAPRPAM-RPEVAKASMRTDVIIKGKKASSILDMREDTVRE------EGMERSFAIDKLVLFIAKAGLEVAQEKMEGRVRRSSSAGS---AGLGTWTGGRITATPKTDMSMTKTAPSDAMLA-----------------TRQQTVELDGSFSSNFPTLS 527
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO17G02430.1 ID=NO17G02430.1|Name=NO17G02430.1|organism=Nannochloropsis oceanica|type=mRNA|length=2402bp
TAATCACGCCACCTCTATCACCCCCGATCACACCCCAACGGCATCCGACC
AGTTGCCTTCCTTTCGGCCGCCGCAATAAATCTAATGTATTCTACGCCAT
GACTATCAATTGAGCAGCATTCTGCAGGCAAGGCTAAGCTTTTTAAAATA
TGGTCATGGCGCTTTTTGTTTCTCGTGTATACAAGTGCGGAAGAAGTCCC
TTGGGTTGTATCTGTCAAATCAAGCTGGCACTTCTTTCCGCCAGGGACGC
GTTTGATTGAACGGAACCTCCGTAATTGTCCTCCCCCTTAACAAAATGCC
GGAGGACATTGACTCCGTGTTATAACAGGAAGCATTTACCTTTCTCTGGC
CCCGTCGTCGTATGACTCTTTTTTAATCACGACCTCTCAACCTCATTCCC
CCCTCTCCCCTTCCCCCCACGCGCTTCGGAATGGCTACCAGCAGTGAGTC
CCCGATCAAGCTTCTCTGCGCTTTTCCTCGTCTCCTAGCCAGCAAAGCCA
TTCTTCACCCTAAGCGACATACACGAGTACCATGGGTGGATCTTGCTCGC
GCCTTCCGGCTGACCAAATCCATCAGCCCCAGCCCTACAAGGCAGCTGAT
GTAAAGACGAAGAAAAGCTGTCCTGCCGATGGTCCCGGCCCAATCCCCCC
TGAGGAGACACAGCAGGAGCGCGGGGCAGAGGGAACAGCAGCAGGCCTCT
CCATCCACACCCGCCGCACCTTTCGTCCCAAAACCACCAACAAGATCGGA
CGTAAAGGTGCACTGACTCTGTTGCGGCCTTCCTCCCTCTGGGCAGCCGG
AGAAGCTACAGTGTTGGAAGTGGAGGTCCGTGTGCCGGTTATGACGCCGT
TTAAAGCAGGGTCGCGCGTGGTATTAGCTGACAACGGTTACTGGCGACAA
GCAAGCGTCCCTCTTCCCGAAGGATTGAAAGCTGGAGACGTGGTGACAGT
TGAGCTGCCAGCGAAACCCAAGCGTGCCCGAATGACCCTGAGGGATGTCA
AGGAGGAGGTAGAGCTTCGAGTTGGAGGAGCGGAGGAAATGATTCAACGG
CAGCTACTTATGTTCAATGCGGTTGATTTCGCTGGAGACCTGATACCCAA
GCTCTCTACGCCGTCTCCCAGTCCTCTTCAACTTCTCGTGATCGGTGGGG
ACAAAGCAGGCAAAAGCACCTTCATTCAAACTCTGGTCTCGGTGCTTAAC
TCGGCTGAGACCGACTCCACCCCTCCCCCTGACGCCTCATCCCTCCAGCC
TACCACCACCTTGACCCGCACCGACCTAGGCAACACCAACACCAGCCGTT
TCCACACACCCCTCCAGGCCTGCGCCGTCGAATTTCCCTCCACCGATGCC
CTATTTGGGATGGAGGAGGAAGAGCTGAAGGTCGCCTTCGGTACCGCCCA
TGCCGTCCTCTTCTTCATCGCTGCCCATGAGATAGAGAGCTCCTCCAAGA
AGACGGAAGACTTGCAACGCCTCTTCCTCCTCCTCCGATCCCTCCCTCTC
TCTCCCCTCATCGTCCTCACGCACATGGACAAAGTTGAGCCATTGATAGC
TCTGGATCCGTCCAACTGGACATTGGATAAAGTTGCGCGCCTCCGTCGTC
GTGTCTGTAAACTTTTCGACGTTACTTGGGCACAGACTTTTGTTTTTGTG
CCTTACTCTGCTCCTAAGCCCGTGGTAACGGCCACGACAACGGCCAAGGC
GAGCATGCGTACTGACGTCATGTTGAGGGGGGAAAGCGGCGGGCACTTTC
CGGATCTGCGGGAGGAGGGCGGGGGGGAGGGGGGAGGAGGGGAGGGAGGA
GGGGGAGGGAGATCTTTTGATATTGATAGGTCGGTGTTGTTCATTGCGAA
GGCGGCATTCGATGCCGCAAAGGGTAAGGTGGAGGCGAACACTTGCATCA
GCAGCAGCAGCAGCAGTAACAGTACGACAAACTCTTCTAGCATCAGCGGC
GGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAAGGTGGTGGCGGCGAC
GCCGGCGATGGGAAGGGTGGCGGAAAAGACGACGTCTACGCCTCTCGTGA
CGGTTGTGAAGAACAGCCCTGTGGCACGCCAGGAGACTGTGGAGTTGGAT
GATTCGTTTTCTTCGAATTTTCAACCCCTAACTTTCTATAGGCGGTAGTG
AAAAGAGGGCGGGAACGAAGGGACTTATGTAGGCGAGCTTTTTGTATTCT
TGACGTTGCGGGGGGTAGAAAGGTGGTAGTGAGGTATTGTTTTTTCTATA
TTGAGTTCTCCTTGAGCTGTAATGAGAGTGGAGGGGAGAGGAGGAGACCC
GGAAATGGAAGACTTAGGCTAAGGCTTTGACTATGGCAATATGTATAAGT
ATATATAACTTATATAAATATATAAGAGTACATATATATATATATATATA
TG back to topprotein sequence of NO17G02430.1 >NO17G02430.1-protein ID=NO17G02430.1-protein|Name=NO17G02430.1|organism=Nannochloropsis oceanica|type=polypeptide|length=539bp
MGGSCSRLPADQIHQPQPYKAADVKTKKSCPADGPGPIPPEETQQERGAE
GTAAGLSIHTRRTFRPKTTNKIGRKGALTLLRPSSLWAAGEATVLEVEVR
VPVMTPFKAGSRVVLADNGYWRQASVPLPEGLKAGDVVTVELPAKPKRAR
MTLRDVKEEVELRVGGAEEMIQRQLLMFNAVDFAGDLIPKLSTPSPSPLQ
LLVIGGDKAGKSTFIQTLVSVLNSAETDSTPPPDASSLQPTTTLTRTDLG
NTNTSRFHTPLQACAVEFPSTDALFGMEEEELKVAFGTAHAVLFFIAAHE
IESSSKKTEDLQRLFLLLRSLPLSPLIVLTHMDKVEPLIALDPSNWTLDK
VARLRRRVCKLFDVTWAQTFVFVPYSAPKPVVTATTTAKASMRTDVMLRG
ESGGHFPDLREEGGGEGGGGEGGGGGRSFDIDRSVLFIAKAAFDAAKGKV
EANTCISSSSSSNSTTNSSSISGGSSSSSSSSSSKVVAATPAMGRVAEKT
TSTPLVTVVKNSPVARQETVELDDSFSSNFQPLTFYRR* back to topmRNA from alignment at chr17:714811..717650- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO17G02430.1 ID=NO17G02430.1|Name=NO17G02430.1|organism=Nannochloropsis oceanica|type=mRNA|length=2840bp|location=Sequence derived from alignment at chr17:714811..717650- (Nannochloropsis oceanica)
TAATCACGCCACCTCTATCACCCCCGATCACACCCCAACGGCATCCGACC
AGTTGCCTTCCTTTCGGCCGCCGCAATAAATCTAATGTATTCTACGCCAT
GACTATCAATTGAGCAGCATTCTGCAGGCAAGGCTAAGCTTTTTAAAATA
TGGTCATGGCGCTTTTTGTTTCTCGTGTATACAAGTGCGGAAGAAGTCCC
TTGGGTTGTATCTGTCAAATCAAGCTGGCACTTCTTTCCGCCAGGGACGC
GTTTGATTGAACGGAACCTCCGTAATTGTCCTCCCCCTTAACAAAATGCC
GGAGGACATTGACTCCGTGTTATAACAGGAAGCATTTACCTTTCTCTGGC
CCCGTCGTCGTATGACTCTTTTTTAATCACGACCTCTCAACCTCATTCCC
CCCTCTCCCCTTCCCCCCACGCGCTTCGGAATGGCTACCAGCAGTGAGTC
CCCGATCAAGCTTCTCTGCGCTTTTCCTCGTCTCCTAGCCAGCAAAGCCA
TTCTTCACCCTAAGCGACATACACGAGTACCATGGGTGGATCTTGCTCGC
GCCTTCCGGCTGACCAAATCCATCAGCCCCAGGTGCGTCTTTGTAAACCC
ACAGCCAAAGCAGAGAATAGGCAGCTTGTCTCTGTGCATAGAAGCAGAAC
AGCGCTTGCTTGTGGGGGGATGGATGCCGTGTCTATGAGCCCCTACTTTC
TCTCAACTCCTCGCCCAGAAGCTCTCTTCTCTCCTCTCCTCCCCGTCCTT
CCCCCCCCTTTCCTTTCCTTTCTCCCCTCACACTTCTCCTTTCTATCCCT
CCCTCCTTCTCCCTTCTCTCCATCATCATCCAACTTGAGGATACAGTCAG
ACTTTCCTATTCGTCAAGGCAATATCGGCAACTCGATCTTTCCTCTGTTG
AGCAACAGTCGGCGCTTTATGTGGCACATGCACCTCTCCTCTTACTCACT
TTCGCTTCTTCTCAACCTCATTCCCGAAACACTTCCTCCGTCCCTTAATC
CCCTTTTCATTCATTCGTAGCCCTACAAGGCAGCTGATGTAAAGACGAAG
AAAAGCTGTCCTGCCGATGGTCCCGGCCCAATCCCCCCTGAGGAGACACA
GCAGGAGCGCGGGGCAGAGGGAACAGCAGCAGGCCTCTCCATCCACACCC
GCCGCACCTTTCGTCCCAAAACCACCAACAAGATCGGACGTAAAGGTGCA
CTGACTCTGTTGCGGCCTTCCTCCCTCTGGGCAGCCGGAGAAGCTACAGT
GTTGGAAGTGGAGGTCCGTGTGCCGGTTATGACGCCGTTTAAAGCAGGGT
CGCGCGTGGTATTAGCTGACAACGGTTACTGGCGACAAGCAAGCGTCCCT
CTTCCCGAAGGATTGAAAGCTGGAGACGTGGTGACAGTTGAGCTGCCAGC
GAAACCCAAGCGTGCCCGAATGACCCTGAGGGATGTCAAGGAGGAGGTAG
AGCTTCGAGTTGGAGGAGCGGAGGAAATGATTCAACGGCAGCTACTTATG
TTCAATGCGGTTGATTTCGCTGGAGACCTGATACCCAAGCTCTCTACGCC
GTCTCCCAGTCCTCTTCAACTTCTCGTGATCGGTGGGGACAAAGCAGGCA
AAAGCACCTTCATTCAAACTCTGGTCTCGGTGCTTAACTCGGCTGAGACC
GACTCCACCCCTCCCCCTGACGCCTCATCCCTCCAGCCTACCACCACCTT
GACCCGCACCGACCTAGGCAACACCAACACCAGCCGTTTCCACACACCCC
TCCAGGCCTGCGCCGTCGAATTTCCCTCCACCGATGCCCTATTTGGGATG
GAGGAGGAAGAGCTGAAGGTCGCCTTCGGTACCGCCCATGCCGTCCTCTT
CTTCATCGCTGCCCATGAGATAGAGAGCTCCTCCAAGAAGACGGAAGACT
TGCAACGCCTCTTCCTCCTCCTCCGATCCCTCCCTCTCTCTCCCCTCATC
GTCCTCACGCACATGGACAAAGTTGAGCCATTGATAGCTCTGGATCCGTC
CAACTGGACATTGGATAAAGTTGCGCGCCTCCGTCGTCGTGTCTGTAAAC
TTTTCGACGTTACTTGGGCACAGACTTTTGTTTTTGTGCCTTACTCTGCT
CCTAAGCCCGTGGTAACGGCCACGACAACGGCCAAGGCGAGCATGCGTAC
TGACGTCATGTTGAGGGGGGAAAGCGGCGGGCACTTTCCGGATCTGCGGG
AGGAGGGCGGGGGGGAGGGGGGAGGAGGGGAGGGAGGAGGGGGAGGGAGA
TCTTTTGATATTGATAGGTCGGTGTTGTTCATTGCGAAGGCGGCATTCGA
TGCCGCAAAGGGTAAGGTGGAGGCGAACACTTGCATCAGCAGCAGCAGCA
GCAGTAACAGTACGACAAACTCTTCTAGCATCAGCGGCGGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAAGGTGGTGGCGGCGACGCCGGCGATGGG
AAGGGTGGCGGAAAAGACGACGTCTACGCCTCTCGTGACGGTTGTGAAGA
ACAGCCCTGTGGCACGCCAGGAGACTGTGGAGTTGGATGATTCGTTTTCT
TCGAATTTTCAACCCCTAACTTTCTATAGGCGGTAGTGAAAAGAGGGCGG
GAACGAAGGGACTTATGTAGGCGAGCTTTTTGTATTCTTGACGTTGCGGG
GGGTAGAAAGGTGGTAGTGAGGTATTGTTTTTTCTATATTGAGTTCTCCT
TGAGCTGTAATGAGAGTGGAGGGGAGAGGAGGAGACCCGGAAATGGAAGA
CTTAGGCTAAGGCTTTGACTATGGCAATATGTATAAGTATATATAACTTA
TATAAATATATAAGAGTACATATATATATATATATATATG back to topCoding sequence (CDS) from alignment at chr17:714811..717650- >NO17G02430.1 ID=NO17G02430.1|Name=NO17G02430.1|organism=Nannochloropsis oceanica|type=CDS|length=1617bp|location=Sequence derived from alignment at chr17:714811..717650- (Nannochloropsis oceanica)
ATGGGTGGATCTTGCTCGCGCCTTCCGGCTGACCAAATCCATCAGCCCCA
GCCCTACAAGGCAGCTGATGTAAAGACGAAGAAAAGCTGTCCTGCCGATG
GTCCCGGCCCAATCCCCCCTGAGGAGACACAGCAGGAGCGCGGGGCAGAG
GGAACAGCAGCAGGCCTCTCCATCCACACCCGCCGCACCTTTCGTCCCAA
AACCACCAACAAGATCGGACGTAAAGGTGCACTGACTCTGTTGCGGCCTT
CCTCCCTCTGGGCAGCCGGAGAAGCTACAGTGTTGGAAGTGGAGGTCCGT
GTGCCGGTTATGACGCCGTTTAAAGCAGGGTCGCGCGTGGTATTAGCTGA
CAACGGTTACTGGCGACAAGCAAGCGTCCCTCTTCCCGAAGGATTGAAAG
CTGGAGACGTGGTGACAGTTGAGCTGCCAGCGAAACCCAAGCGTGCCCGA
ATGACCCTGAGGGATGTCAAGGAGGAGGTAGAGCTTCGAGTTGGAGGAGC
GGAGGAAATGATTCAACGGCAGCTACTTATGTTCAATGCGGTTGATTTCG
CTGGAGACCTGATACCCAAGCTCTCTACGCCGTCTCCCAGTCCTCTTCAA
CTTCTCGTGATCGGTGGGGACAAAGCAGGCAAAAGCACCTTCATTCAAAC
TCTGGTCTCGGTGCTTAACTCGGCTGAGACCGACTCCACCCCTCCCCCTG
ACGCCTCATCCCTCCAGCCTACCACCACCTTGACCCGCACCGACCTAGGC
AACACCAACACCAGCCGTTTCCACACACCCCTCCAGGCCTGCGCCGTCGA
ATTTCCCTCCACCGATGCCCTATTTGGGATGGAGGAGGAAGAGCTGAAGG
TCGCCTTCGGTACCGCCCATGCCGTCCTCTTCTTCATCGCTGCCCATGAG
ATAGAGAGCTCCTCCAAGAAGACGGAAGACTTGCAACGCCTCTTCCTCCT
CCTCCGATCCCTCCCTCTCTCTCCCCTCATCGTCCTCACGCACATGGACA
AAGTTGAGCCATTGATAGCTCTGGATCCGTCCAACTGGACATTGGATAAA
GTTGCGCGCCTCCGTCGTCGTGTCTGTAAACTTTTCGACGTTACTTGGGC
ACAGACTTTTGTTTTTGTGCCTTACTCTGCTCCTAAGCCCGTGGTAACGG
CCACGACAACGGCCAAGGCGAGCATGCGTACTGACGTCATGTTGAGGGGG
GAAAGCGGCGGGCACTTTCCGGATCTGCGGGAGGAGGGCGGGGGGGAGGG
GGGAGGAGGGGAGGGAGGAGGGGGAGGGAGATCTTTTGATATTGATAGGT
CGGTGTTGTTCATTGCGAAGGCGGCATTCGATGCCGCAAAGGGTAAGGTG
GAGGCGAACACTTGCATCAGCAGCAGCAGCAGCAGTAACAGTACGACAAA
CTCTTCTAGCATCAGCGGCGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAAGGTGGTGGCGGCGACGCCGGCGATGGGAAGGGTGGCGGAAAAGACG
ACGTCTACGCCTCTCGTGACGGTTGTGAAGAACAGCCCTGTGGCACGCCA
GGAGACTGTGGAGTTGGATGATTCGTTTTCTTCGAATTTTCAACCCCTAA
CTTTCTATAGGCGGTAG back to top
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