NO17G02430, NO17G02430 (gene) Nannochloropsis oceanica

Overview
NameNO17G02430
Unique NameNO17G02430
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2840
Alignment locationchr17:714811..717650 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:714811..717650 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
Homology
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BLAST of NO17G02430 vs. NCBI_GenBank
Match: XP_005854034.1 (hypothetical protein NGA_0458600 [Nannochloropsis gaditana CCMP526] >EKU22327.1 hypothetical protein NGA_0458600 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 286.6 bits (732), Expect = 1.300e-73
Identity = 181/448 (40.40%), Postives = 257/448 (57.37%), Query Frame = 0 
Query:    4 FKAGSRVVLADNGYWRQASVPLPEGLKAGDVVTVELPAKPKRARMTLRDVKEEVELRV-------GGAEEMIQRQLLMFNAVDFAGDLIPKLSTPS--PSPLQLLVIGGDKAGKSTFIQTLVSVLNSAETDSTPPPDASSLQPTTTLTRTDLGNTNTS-RFHTPLQACAVEFPSTDALFGMEEEE--LKVAFGTAHAVLFFIAAHEIESSSKKTEDLQRLFLLLRSLPLSPLIVLTHMDKVEPLIALDPSNWTLDKVARLRRRVCKLFDVTWAQTFVFVPYSAPKPVVTATTTAKASMRTDVMLRGESGGHFPDLREEXXXXXXXXXXXXXXRSFDIDRSVLFIAKAAFDAAKGKVEANTCIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAMGR-VAEKTTSTPL--VTVVKNSP-----VARQETVELDDSFSSNFQPLT 432
            F+ G++V + DNGYW+++SV +P+GL  GDVVTVEL A+PKR++MTL+DVK ++ELRV       GG E +I RQ + F+ +DFAGDL P   +PS   +PL L ++G ++AGK+TF+++L +VL SAETD   PP  +S+ PTT +TR +L     S RF  PL A   E PS+  L   + ++  ++      H  L F+AA E+E++  K   LQ     L++   +PL+VLT MDKVEPL+A DP NW+L KV+ +RRR  +   V+WA T VFVPY+AP+P +     AKASMRTDV+++G+      D+RE+              RSF ID+ VLFIAKA  + A+ K+E                                         +G     + T+TP   +++ K +P       RQ+TVELD SFSSNF  L+
Sbjct:  117 FEPGTKVFMPDNGYWKESSVSVPDGLSPGDVVTVELLAEPKRSKMTLKDVKADIELRVTGPSVTPGGPEMIILRQYVAFDGIDFAGDLFPIPLSPSLGTAPLLLYILGAEQAGKTTFVESLRNVLASAETDM--PPPQTSIVPTTEITRLELNAEAISPRFRAPLTARVTEIPSSMVLAPTDADKASMERLLPAGHGALVFVAADEVETAPAKMAGLQASIQQLKAQNFNPLVVLTRMDKVEPLVAADPFNWSLKKVSHVRRRASQCLGVSWANTLVFVPYAAPRPAM-RPEVAKASMRTDVIIKGKKASSILDMRED------TVREEGMERSFAIDKLVLFIAKAGLEVAQEKMEGRV----------------------------RRSSSAGSAGLGTWTGGRITATPKTDMSMTKTAPSDAMLATRQQTVELDGSFSSNFPTLS 527
[Close]
BLAST of NO17G02430 vs. NCBI_GenBank
Match: EWM24170.1 (hypothetical protein Naga_100296g5 [Nannochloropsis gaditana])

HSP 1 Score: 139.8 bits (351), Expect = 2.000e-29
Identity = 75/158 (47.47%), Postives = 107/158 (67.72%), Query Frame = 0 
Query:    4 FKAGSRVVLADNGYWRQASVPLPEGLKAGDVVTVELPAKPKRARMTLRDVKEEVELRV-------GGAEEMIQRQLLMFNAVDFAGDLIPKLSTPS--PSPLQLLVIGGDKAGKSTFIQTLVSVLNSAETDSTPPPDASSLQPTTTLTRTDLGNTNTS 153
            F+ G++V + DNGYW+++SV +P+GL  GDVVTVEL A+PKR++MTL+DVK ++ELRV       GG E +I RQ + F+ +DFAGDL P   +PS   +PL L ++G ++AGK+TF+++L +VL SAETD  PP D  S        R   G+  +S
Sbjct:  117 FEPGTKVFMPDNGYWKESSVSVPDGLSPGDVVTVELLAEPKRSKMTLKDVKADIELRVTGPSVTPGGPEMIILRQYVAFDGIDFAGDLFPIPLSPSLGTAPLLLYILGAEQAGKTTFVESLRNVLASAETDMPPPSDLDSTDHRDHSPRAQCGSDQSS 274
The following BLAST results are available for this feature:
BLAST of NO17G02430 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
XP_005854034.11.300e-7340.40hypothetical protein NGA_0458600 [Nannochloropsis ... [more]
EWM24170.12.000e-2947.47hypothetical protein Naga_100296g5 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL156nonsL156Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR053ncniR053Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR028ngnoR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO17G02430.2NO17G02430.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO17G02430.1NO17G02430.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO17G02430.2NO17G02430.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO17G02430.1NO17G02430.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO17G02430 ID=NO17G02430|Name=NO17G02430|organism=Nannochloropsis oceanica|type=gene|length=2840bp
TAATCACGCCACCTCTATCACCCCCGATCACACCCCAACGGCATCCGACC
AGTTGCCTTCCTTTCGGCCGCCGCAATAAATCTAATGTATTCTACGCCAT
GACTATCAATTGAGCAGCATTCTGCAGGCAAGGCTAAGCTTTTTAAAATA
TGGTCATGGCGCTTTTTGTTTCTCGTGTATACAAGTGCGGAAGAAGTCCC
TTGGGTTGTATCTGTCAAATCAAGCTGGCACTTCTTTCCGCCAGGGACGC
GTTTGATTGAACGGAACCTCCGTAATTGTCCTCCCCCTTAACAAAATGCC
GGAGGACATTGACTCCGTGTTATAACAGGAAGCATTTACCTTTCTCTGGC
CCCGTCGTCGTATGACTCTTTTTTAATCACGACCTCTCAACCTCATTCCC
CCCTCTCCCCTTCCCCCCACGCGCTTCGGAATGGCTACCAGCAGTGAGTC
CCCGATCAAGCTTCTCTGCGCTTTTCCTCGTCTCCTAGCCAGCAAAGCCA
TTCTTCACCCTAAGCGACATACACGAGTACCATGGGTGGATCTTGCTCGC
GCCTTCCGGCTGACCAAATCCATCAGCCCCAGgtgcgtctttgtaaaccc
acagccaaagcagagaataggcagcttgtctctgtgcatagaagcagaac
agcgcttgcttgtggggggatggatgccgtgtctatgagcccctactttc
tctcaactcctcgcccagaagctctcttctctcctctcctccccgtcctt
cccccccctttcctttcctttctcccctcacacttctcctttctatccct
ccctccttctcccttctctccatcatcatccaacttgaggatacagtcag
actttcctattcgtcaaggcaatatcggcaactcgatctttcctctgttg
agcaacagtcggcgctttatgtggcacatgcacctctcctcttactcact
ttcgcttcttctcaacctcattcccgaaacacttcctccgtcccttaatc
cccttttcattcattcgtagCCCTACAAGGCAGCTGATGTAAAGACGAAG
AAAAGCTGTCCTGCCGATGGTCCCGGCCCAATCCCCCCTGAGGAGACACA
GCAGGAGCGCGGGGCAGAGGGAACAGCAGCAGGCCTCTCCATCCACACCC
GCCGCACCTTTCGTCCCAAAACCACCAACAAGATCGGACGTAAAGGTGCA
CTGACTCTGTTGCGGCCTTCCTCCCTCTGGGCAGCCGGAGAAGCTACAGT
GTTGGAAGTGGAGGTCCGTGTGCCGGTTATGACGCCGTTTAAAGCAGGGT
CGCGCGTGGTATTAGCTGACAACGGTTACTGGCGACAAGCAAGCGTCCCT
CTTCCCGAAGGATTGAAAGCTGGAGACGTGGTGACAGTTGAGCTGCCAGC
GAAACCCAAGCGTGCCCGAATGACCCTGAGGGATGTCAAGGAGGAGGTAG
AGCTTCGAGTTGGAGGAGCGGAGGAAATGATTCAACGGCAGCTACTTATG
TTCAATGCGGTTGATTTCGCTGGAGACCTGATACCCAAGCTCTCTACGCC
GTCTCCCAGTCCTCTTCAACTTCTCGTGATCGGTGGGGACAAAGCAGGCA
AAAGCACCTTCATTCAAACTCTGGTCTCGGTGCTTAACTCGGCTGAGACC
GACTCCACCCCTCCCCCTGACGCCTCATCCCTCCAGCCTACCACCACCTT
GACCCGCACCGACCTAGGCAACACCAACACCAGCCGTTTCCACACACCCC
TCCAGGCCTGCGCCGTCGAATTTCCCTCCACCGATGCCCTATTTGGGATG
GAGGAGGAAGAGCTGAAGGTCGCCTTCGGTACCGCCCATGCCGTCCTCTT
CTTCATCGCTGCCCATGAGATAGAGAGCTCCTCCAAGAAGACGGAAGACT
TGCAACGCCTCTTCCTCCTCCTCCGATCCCTCCCTCTCTCTCCCCTCATC
GTCCTCACGCACATGGACAAAGTTGAGCCATTGATAGCTCTGGATCCGTC
CAACTGGACATTGGATAAAGTTGCGCGCCTCCGTCGTCGTGTCTGTAAAC
TTTTCGACGTTACTTGGGCACAGACTTTTGTTTTTGTGCCTTACTCTGCT
CCTAAGCCCGTGGTAACGGCCACGACAACGGCCAAGGCGAGCATGCGTAC
TGACGTCATGTTGAGGGGGGAAAGCGGCGGGCACTTTCCGGATCTGCGGG
AGGAGGGCGGGGGGGAGGGGGGAGGAGGGGAGGGAGGAGGGGGAGGGAGA
TCTTTTGATATTGATAGGTCGGTGTTGTTCATTGCGAAGGCGGCATTCGA
TGCCGCAAAGGGTAAGGTGGAGGCGAACACTTGCATCAGCAGCAGCAGCA
GCAGTAACAGTACGACAAACTCTTCTAGCATCAGCGGCGGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAAGGTGGTGGCGGCGACGCCGGCGATGGG
AAGGGTGGCGGAAAAGACGACGTCTACGCCTCTCGTGACGGTTGTGAAGA
ACAGCCCTGTGGCACGCCAGGAGACTGTGGAGTTGGATGATTCGTTTTCT
TCGAATTTTCAACCCCTAACTTTCTATAGGCGGTAGTGAAAAGAGGGCGG
GAACGAAGGGACTTATGTAGGCGAGCTTTTTGTATTCTTGACGTTGCGGG
GGGTAGAAAGGTGGTAGTGAGGTATTGTTTTTTCTATATTGAGTTCTCCT
TGAGCTGTAATGAGAGTGGAGGGGAGAGGAGGAGACCCGGAAATGGAAGA
CTTAGGCTAAGGCTTTGACTATGGCAATATGTATAAGTATATATAACTTA
TATAAATATATAAGAGTACATATATATATATATATATATG
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protein sequence of NO17G02430.2

>NO17G02430.2-protein ID=NO17G02430.2-protein|Name=NO17G02430.2|organism=Nannochloropsis oceanica|type=polypeptide|length=436bp
MTPFKAGSRVVLADNGYWRQASVPLPEGLKAGDVVTVELPAKPKRARMTL
RDVKEEVELRVGGAEEMIQRQLLMFNAVDFAGDLIPKLSTPSPSPLQLLV
IGGDKAGKSTFIQTLVSVLNSAETDSTPPPDASSLQPTTTLTRTDLGNTN
TSRFHTPLQACAVEFPSTDALFGMEEEELKVAFGTAHAVLFFIAAHEIES
SSKKTEDLQRLFLLLRSLPLSPLIVLTHMDKVEPLIALDPSNWTLDKVAR
LRRRVCKLFDVTWAQTFVFVPYSAPKPVVTATTTAKASMRTDVMLRGESG
GHFPDLREEGGGEGGGGEGGGGGRSFDIDRSVLFIAKAAFDAAKGKVEAN
TCISSSSSSNSTTNSSSISGGSSSSSSSSSSKVVAATPAMGRVAEKTTST
PLVTVVKNSPVARQETVELDDSFSSNFQPLTFYRR*
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protein sequence of NO17G02430.1

>NO17G02430.1-protein ID=NO17G02430.1-protein|Name=NO17G02430.1|organism=Nannochloropsis oceanica|type=polypeptide|length=539bp
MGGSCSRLPADQIHQPQPYKAADVKTKKSCPADGPGPIPPEETQQERGAE
GTAAGLSIHTRRTFRPKTTNKIGRKGALTLLRPSSLWAAGEATVLEVEVR
VPVMTPFKAGSRVVLADNGYWRQASVPLPEGLKAGDVVTVELPAKPKRAR
MTLRDVKEEVELRVGGAEEMIQRQLLMFNAVDFAGDLIPKLSTPSPSPLQ
LLVIGGDKAGKSTFIQTLVSVLNSAETDSTPPPDASSLQPTTTLTRTDLG
NTNTSRFHTPLQACAVEFPSTDALFGMEEEELKVAFGTAHAVLFFIAAHE
IESSSKKTEDLQRLFLLLRSLPLSPLIVLTHMDKVEPLIALDPSNWTLDK
VARLRRRVCKLFDVTWAQTFVFVPYSAPKPVVTATTTAKASMRTDVMLRG
ESGGHFPDLREEGGGEGGGGEGGGGGRSFDIDRSVLFIAKAAFDAAKGKV
EANTCISSSSSSNSTTNSSSISGGSSSSSSSSSSKVVAATPAMGRVAEKT
TSTPLVTVVKNSPVARQETVELDDSFSSNFQPLTFYRR*
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Synonyms
Publications