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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr17 | genome | chr17:714811..717650 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO17G02430.2 vs.
Match: XP_005854034.1 (hypothetical protein NGA_0458600 [Nannochloropsis gaditana CCMP526]; EKU22327.1 hypothetical protein NGA_0458600 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 279.3 bits (713), Expect = 2.100e-71 Identity = 185/440 (42.05%), Postives = 264/440 (60.00%), Query Frame = 0
Query: 4 FKAGSRVVLADNGYWRQASVPLPEGLKAGDVVTVELPAKPKRARMTLRDVKEEVELRV-------GGAEEMIQRQLLMFNAVDFAGDLIPKLSTPS--PSPLQLLVIGGDKAGKSTFIQTLVSVLNSAETDSTPPPDASSLQPTTTLTRTDLGNTNTS-RFHTPLQACAVEFPSTDALFGMEEEE--LKVAFGTAHAVLFFIAAHEIESSSKKTEDLQRLFLLLRSLPLSPLIVLTHMDKVEPLIALDPSNWTLDKVARLRRRVCKLFDVTWAQTFVFVPYSAPKPVVTATTTAKASMRTDVMLRGESGGHFPDLREEGGGEGGGGEGGGGGRSFDIDRSVLFIAKAAFDAAKGKVEANTCISSSSSSNSTTNSSSISGGSSSSSSSSSSKVVAATPAMGRVAEKTTSTPLVTVVKNSPVARQETVELDDSFSSNFQPLT 432
F+ G++V + DNGYW+++SV +P+GL GDVVTVEL A+PKR++MTL+DVK ++ELRV GG E +I RQ + F+ +DFAGDL P +PS +PL L ++G ++AGK+TF+++L +VL SAETD PP +S+ PTT +TR +L S RF PL A E PS+ L + ++ ++ H L F+AA E+E++ K LQ L++ +PL+VLT MDKVEPL+A DP NW+L KV+ +RRR + V+WA T VFVPY+AP+P + AKASMRTDV+++G+ D+RE+ E G RSF ID+ VLFIAKA + A+ K+E SSS+ S + +GG +++ + + P+ +A RQ+TVELD SFSSNF L+
Sbjct: 117 FEPGTKVFMPDNGYWKESSVSVPDGLSPGDVVTVELLAEPKRSKMTLKDVKADIELRVTGPSVTPGGPEMIILRQYVAFDGIDFAGDLFPIPLSPSLGTAPLLLYILGAEQAGKTTFVESLRNVLASAETDM--PPPQTSIVPTTEITRLELNAEAISPRFRAPLTARVTEIPSSMVLAPTDADKASMERLLPAGHGALVFVAADEVETAPAKMAGLQASIQQLKAQNFNPLVVLTRMDKVEPLVAADPFNWSLKKVSHVRRRASQCLGVSWANTLVFVPYAAPRPAM-RPEVAKASMRTDVIIKGKKASSILDMREDTVRE------EGMERSFAIDKLVLFIAKAGLEVAQEKMEGRVRRSSSAGS---AGLGTWTGGRITATPKTDMSMTKTAPSDAMLA-----------------TRQQTVELDGSFSSNFPTLS 527
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO17G02430.2 ID=NO17G02430.2|Name=NO17G02430.2|organism=Nannochloropsis oceanica|type=mRNA|length=2576bp TAATCACGCCACCTCTATCACCCCCGATCACACCCCAACGGCATCCGACC AGTTGCCTTCCTTTCGGCCGCCGCAATAAATCTAATGTATTCTACGCCAT GACTATCAATTGAGCAGCATTCTGCAGGCAAGGCTAAGCTTTTTAAAATA TGGTCATGGCGCTTTTTGTTTCTCGTGTATACAAGTGCGGAAGAAGTCCC TTGGGTTGTATCTGTCAAATCAAGCTGGCACTTCTTTCCGCCAGGGACGC GTTTGATTGAACGGAACCTCCGTAATTGTCCTCCCCCTTAACAAAATGCC GGAGGACATTGACTCCGTGTTATAACAGGAAGCATTTACCTTTCTCTGGC CCCGTCGTCGTATGACTCTTTTTTAATCACGACCTCTCAACCTCATTCCC CCCTCTCCCCTTCCCCCCACGCGCTTCGGAATGGCTACCAGCAGTGAGTC CCCGATCAAGCTTCTCTGCGCTTTTCCTCGTCTCCTAGCCAGCAAAGCCA TTCTTCACCCTAAGCGACATACACGAGTACCATGGGTGGATCTTGCTCGC GCCTTCCGGCTGACCAAATCCATCAGCCCCAGTCAGACTTTCCTATTCGT CAAGGCAATATCGGCAACTCGATCTTTCCTCTGTTGAGCAACAGTCGGCG CTTTATGTGGCACATGCACCTCTCCTCTTACTCACTTTCGCTTCTTCTCA ACCTCATTCCCGAAACACTTCCTCCGTCCCTTAATCCCCTTTTCATTCAT TCGTAGCCCTACAAGGCAGCTGATGTAAAGACGAAGAAAAGCTGTCCTGC CGATGGTCCCGGCCCAATCCCCCCTGAGGAGACACAGCAGGAGCGCGGGG CAGAGGGAACAGCAGCAGGCCTCTCCATCCACACCCGCCGCACCTTTCGT CCCAAAACCACCAACAAGATCGGACGTAAAGGTGCACTGACTCTGTTGCG GCCTTCCTCCCTCTGGGCAGCCGGAGAAGCTACAGTGTTGGAAGTGGAGG TCCGTGTGCCGGTTATGACGCCGTTTAAAGCAGGGTCGCGCGTGGTATTA GCTGACAACGGTTACTGGCGACAAGCAAGCGTCCCTCTTCCCGAAGGATT GAAAGCTGGAGACGTGGTGACAGTTGAGCTGCCAGCGAAACCCAAGCGTG CCCGAATGACCCTGAGGGATGTCAAGGAGGAGGTAGAGCTTCGAGTTGGA GGAGCGGAGGAAATGATTCAACGGCAGCTACTTATGTTCAATGCGGTTGA TTTCGCTGGAGACCTGATACCCAAGCTCTCTACGCCGTCTCCCAGTCCTC TTCAACTTCTCGTGATCGGTGGGGACAAAGCAGGCAAAAGCACCTTCATT CAAACTCTGGTCTCGGTGCTTAACTCGGCTGAGACCGACTCCACCCCTCC CCCTGACGCCTCATCCCTCCAGCCTACCACCACCTTGACCCGCACCGACC TAGGCAACACCAACACCAGCCGTTTCCACACACCCCTCCAGGCCTGCGCC GTCGAATTTCCCTCCACCGATGCCCTATTTGGGATGGAGGAGGAAGAGCT GAAGGTCGCCTTCGGTACCGCCCATGCCGTCCTCTTCTTCATCGCTGCCC ATGAGATAGAGAGCTCCTCCAAGAAGACGGAAGACTTGCAACGCCTCTTC CTCCTCCTCCGATCCCTCCCTCTCTCTCCCCTCATCGTCCTCACGCACAT GGACAAAGTTGAGCCATTGATAGCTCTGGATCCGTCCAACTGGACATTGG ATAAAGTTGCGCGCCTCCGTCGTCGTGTCTGTAAACTTTTCGACGTTACT TGGGCACAGACTTTTGTTTTTGTGCCTTACTCTGCTCCTAAGCCCGTGGT AACGGCCACGACAACGGCCAAGGCGAGCATGCGTACTGACGTCATGTTGA GGGGGGAAAGCGGCGGGCACTTTCCGGATCTGCGGGAGGAGGGCGGGGGG GAGGGGGGAGGAGGGGAGGGAGGAGGGGGAGGGAGATCTTTTGATATTGA TAGGTCGGTGTTGTTCATTGCGAAGGCGGCATTCGATGCCGCAAAGGGTA AGGTGGAGGCGAACACTTGCATCAGCAGCAGCAGCAGCAGTAACAGTACG ACAAACTCTTCTAGCATCAGCGGCGGCAGCAGCAGCAGCAGCAGCAGCAG CAGCAGCAAGGTGGTGGCGGCGACGCCGGCGATGGGAAGGGTGGCGGAAA AGACGACGTCTACGCCTCTCGTGACGGTTGTGAAGAACAGCCCTGTGGCA CGCCAGGAGACTGTGGAGTTGGATGATTCGTTTTCTTCGAATTTTCAACC CCTAACTTTCTATAGGCGGTAGTGAAAAGAGGGCGGGAACGAAGGGACTT ATGTAGGCGAGCTTTTTGTATTCTTGACGTTGCGGGGGGTAGAAAGGTGG TAGTGAGGTATTGTTTTTTCTATATTGAGTTCTCCTTGAGCTGTAATGAG AGTGGAGGGGAGAGGAGGAGACCCGGAAATGGAAGACTTAGGCTAAGGCT TTGACTATGGCAATATGTATAAGTATATATAACTTATATAAATATATAAG AGTACATATATATATATATATATATG back to topprotein sequence of NO17G02430.2 >NO17G02430.2-protein ID=NO17G02430.2-protein|Name=NO17G02430.2|organism=Nannochloropsis oceanica|type=polypeptide|length=436bp MTPFKAGSRVVLADNGYWRQASVPLPEGLKAGDVVTVELPAKPKRARMTL RDVKEEVELRVGGAEEMIQRQLLMFNAVDFAGDLIPKLSTPSPSPLQLLV IGGDKAGKSTFIQTLVSVLNSAETDSTPPPDASSLQPTTTLTRTDLGNTN TSRFHTPLQACAVEFPSTDALFGMEEEELKVAFGTAHAVLFFIAAHEIES SSKKTEDLQRLFLLLRSLPLSPLIVLTHMDKVEPLIALDPSNWTLDKVAR LRRRVCKLFDVTWAQTFVFVPYSAPKPVVTATTTAKASMRTDVMLRGESG GHFPDLREEGGGEGGGGEGGGGGRSFDIDRSVLFIAKAAFDAAKGKVEAN TCISSSSSSNSTTNSSSISGGSSSSSSSSSSKVVAATPAMGRVAEKTTST PLVTVVKNSPVARQETVELDDSFSSNFQPLTFYRR* back to topmRNA from alignment at chr17:714811..717650- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO17G02430.2 ID=NO17G02430.2|Name=NO17G02430.2|organism=Nannochloropsis oceanica|type=mRNA|length=2840bp|location=Sequence derived from alignment at chr17:714811..717650- (Nannochloropsis oceanica) TAATCACGCCACCTCTATCACCCCCGATCACACCCCAACGGCATCCGACC
AGTTGCCTTCCTTTCGGCCGCCGCAATAAATCTAATGTATTCTACGCCAT
GACTATCAATTGAGCAGCATTCTGCAGGCAAGGCTAAGCTTTTTAAAATA
TGGTCATGGCGCTTTTTGTTTCTCGTGTATACAAGTGCGGAAGAAGTCCC
TTGGGTTGTATCTGTCAAATCAAGCTGGCACTTCTTTCCGCCAGGGACGC
GTTTGATTGAACGGAACCTCCGTAATTGTCCTCCCCCTTAACAAAATGCC
GGAGGACATTGACTCCGTGTTATAACAGGAAGCATTTACCTTTCTCTGGC
CCCGTCGTCGTATGACTCTTTTTTAATCACGACCTCTCAACCTCATTCCC
CCCTCTCCCCTTCCCCCCACGCGCTTCGGAATGGCTACCAGCAGTGAGTC
CCCGATCAAGCTTCTCTGCGCTTTTCCTCGTCTCCTAGCCAGCAAAGCCA
TTCTTCACCCTAAGCGACATACACGAGTACCATGGGTGGATCTTGCTCGC
GCCTTCCGGCTGACCAAATCCATCAGCCCCAGGTGCGTCTTTGTAAACCC
ACAGCCAAAGCAGAGAATAGGCAGCTTGTCTCTGTGCATAGAAGCAGAAC
AGCGCTTGCTTGTGGGGGGATGGATGCCGTGTCTATGAGCCCCTACTTTC
TCTCAACTCCTCGCCCAGAAGCTCTCTTCTCTCCTCTCCTCCCCGTCCTT
CCCCCCCCTTTCCTTTCCTTTCTCCCCTCACACTTCTCCTTTCTATCCCT
CCCTCCTTCTCCCTTCTCTCCATCATCATCCAACTTGAGGATACAGTCAG
ACTTTCCTATTCGTCAAGGCAATATCGGCAACTCGATCTTTCCTCTGTTG
AGCAACAGTCGGCGCTTTATGTGGCACATGCACCTCTCCTCTTACTCACT
TTCGCTTCTTCTCAACCTCATTCCCGAAACACTTCCTCCGTCCCTTAATC
CCCTTTTCATTCATTCGTAGCCCTACAAGGCAGCTGATGTAAAGACGAAG
AAAAGCTGTCCTGCCGATGGTCCCGGCCCAATCCCCCCTGAGGAGACACA
GCAGGAGCGCGGGGCAGAGGGAACAGCAGCAGGCCTCTCCATCCACACCC
GCCGCACCTTTCGTCCCAAAACCACCAACAAGATCGGACGTAAAGGTGCA
CTGACTCTGTTGCGGCCTTCCTCCCTCTGGGCAGCCGGAGAAGCTACAGT
GTTGGAAGTGGAGGTCCGTGTGCCGGTTATGACGCCGTTTAAAGCAGGGT
CGCGCGTGGTATTAGCTGACAACGGTTACTGGCGACAAGCAAGCGTCCCT
CTTCCCGAAGGATTGAAAGCTGGAGACGTGGTGACAGTTGAGCTGCCAGC
GAAACCCAAGCGTGCCCGAATGACCCTGAGGGATGTCAAGGAGGAGGTAG
AGCTTCGAGTTGGAGGAGCGGAGGAAATGATTCAACGGCAGCTACTTATG
TTCAATGCGGTTGATTTCGCTGGAGACCTGATACCCAAGCTCTCTACGCC
GTCTCCCAGTCCTCTTCAACTTCTCGTGATCGGTGGGGACAAAGCAGGCA
AAAGCACCTTCATTCAAACTCTGGTCTCGGTGCTTAACTCGGCTGAGACC
GACTCCACCCCTCCCCCTGACGCCTCATCCCTCCAGCCTACCACCACCTT
GACCCGCACCGACCTAGGCAACACCAACACCAGCCGTTTCCACACACCCC
TCCAGGCCTGCGCCGTCGAATTTCCCTCCACCGATGCCCTATTTGGGATG
GAGGAGGAAGAGCTGAAGGTCGCCTTCGGTACCGCCCATGCCGTCCTCTT
CTTCATCGCTGCCCATGAGATAGAGAGCTCCTCCAAGAAGACGGAAGACT
TGCAACGCCTCTTCCTCCTCCTCCGATCCCTCCCTCTCTCTCCCCTCATC
GTCCTCACGCACATGGACAAAGTTGAGCCATTGATAGCTCTGGATCCGTC
CAACTGGACATTGGATAAAGTTGCGCGCCTCCGTCGTCGTGTCTGTAAAC
TTTTCGACGTTACTTGGGCACAGACTTTTGTTTTTGTGCCTTACTCTGCT
CCTAAGCCCGTGGTAACGGCCACGACAACGGCCAAGGCGAGCATGCGTAC
TGACGTCATGTTGAGGGGGGAAAGCGGCGGGCACTTTCCGGATCTGCGGG
AGGAGGGCGGGGGGGAGGGGGGAGGAGGGGAGGGAGGAGGGGGAGGGAGA
TCTTTTGATATTGATAGGTCGGTGTTGTTCATTGCGAAGGCGGCATTCGA
TGCCGCAAAGGGTAAGGTGGAGGCGAACACTTGCATCAGCAGCAGCAGCA
GCAGTAACAGTACGACAAACTCTTCTAGCATCAGCGGCGGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAAGGTGGTGGCGGCGACGCCGGCGATGGG
AAGGGTGGCGGAAAAGACGACGTCTACGCCTCTCGTGACGGTTGTGAAGA
ACAGCCCTGTGGCACGCCAGGAGACTGTGGAGTTGGATGATTCGTTTTCT
TCGAATTTTCAACCCCTAACTTTCTATAGGCGGTAGTGAAAAGAGGGCGG
GAACGAAGGGACTTATGTAGGCGAGCTTTTTGTATTCTTGACGTTGCGGG
GGGTAGAAAGGTGGTAGTGAGGTATTGTTTTTTCTATATTGAGTTCTCCT
TGAGCTGTAATGAGAGTGGAGGGGAGAGGAGGAGACCCGGAAATGGAAGA
CTTAGGCTAAGGCTTTGACTATGGCAATATGTATAAGTATATATAACTTA
TATAAATATATAAGAGTACATATATATATATATATATATG back to topCoding sequence (CDS) from alignment at chr17:714811..717650- >NO17G02430.2 ID=NO17G02430.2|Name=NO17G02430.2|organism=Nannochloropsis oceanica|type=CDS|length=1308bp|location=Sequence derived from alignment at chr17:714811..717650- (Nannochloropsis oceanica) ATGACGCCGTTTAAAGCAGGGTCGCGCGTGGTATTAGCTGACAACGGTTA CTGGCGACAAGCAAGCGTCCCTCTTCCCGAAGGATTGAAAGCTGGAGACG TGGTGACAGTTGAGCTGCCAGCGAAACCCAAGCGTGCCCGAATGACCCTG AGGGATGTCAAGGAGGAGGTAGAGCTTCGAGTTGGAGGAGCGGAGGAAAT GATTCAACGGCAGCTACTTATGTTCAATGCGGTTGATTTCGCTGGAGACC TGATACCCAAGCTCTCTACGCCGTCTCCCAGTCCTCTTCAACTTCTCGTG ATCGGTGGGGACAAAGCAGGCAAAAGCACCTTCATTCAAACTCTGGTCTC GGTGCTTAACTCGGCTGAGACCGACTCCACCCCTCCCCCTGACGCCTCAT CCCTCCAGCCTACCACCACCTTGACCCGCACCGACCTAGGCAACACCAAC ACCAGCCGTTTCCACACACCCCTCCAGGCCTGCGCCGTCGAATTTCCCTC CACCGATGCCCTATTTGGGATGGAGGAGGAAGAGCTGAAGGTCGCCTTCG GTACCGCCCATGCCGTCCTCTTCTTCATCGCTGCCCATGAGATAGAGAGC TCCTCCAAGAAGACGGAAGACTTGCAACGCCTCTTCCTCCTCCTCCGATC CCTCCCTCTCTCTCCCCTCATCGTCCTCACGCACATGGACAAAGTTGAGC CATTGATAGCTCTGGATCCGTCCAACTGGACATTGGATAAAGTTGCGCGC CTCCGTCGTCGTGTCTGTAAACTTTTCGACGTTACTTGGGCACAGACTTT TGTTTTTGTGCCTTACTCTGCTCCTAAGCCCGTGGTAACGGCCACGACAA CGGCCAAGGCGAGCATGCGTACTGACGTCATGTTGAGGGGGGAAAGCGGC GGGCACTTTCCGGATCTGCGGGAGGAGGGCGGGGGGGAGGGGGGAGGAGG GGAGGGAGGAGGGGGAGGGAGATCTTTTGATATTGATAGGTCGGTGTTGT TCATTGCGAAGGCGGCATTCGATGCCGCAAAGGGTAAGGTGGAGGCGAAC ACTTGCATCAGCAGCAGCAGCAGCAGTAACAGTACGACAAACTCTTCTAG CATCAGCGGCGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAAGGTGG TGGCGGCGACGCCGGCGATGGGAAGGGTGGCGGAAAAGACGACGTCTACG CCTCTCGTGACGGTTGTGAAGAACAGCCCTGTGGCACGCCAGGAGACTGT GGAGTTGGATGATTCGTTTTCTTCGAATTTTCAACCCCTAACTTTCTATA GGCGGTAG back to top
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