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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr17 | genome | chr17:714811..717650 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO17G02430.2 vs.
Match: XP_005854034.1 (hypothetical protein NGA_0458600 [Nannochloropsis gaditana CCMP526]; EKU22327.1 hypothetical protein NGA_0458600 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 279.3 bits (713), Expect = 2.100e-71 Identity = 185/440 (42.05%), Postives = 264/440 (60.00%), Query Frame = 0
Query: 4 FKAGSRVVLADNGYWRQASVPLPEGLKAGDVVTVELPAKPKRARMTLRDVKEEVELRV-------GGAEEMIQRQLLMFNAVDFAGDLIPKLSTPS--PSPLQLLVIGGDKAGKSTFIQTLVSVLNSAETDSTPPPDASSLQPTTTLTRTDLGNTNTS-RFHTPLQACAVEFPSTDALFGMEEEE--LKVAFGTAHAVLFFIAAHEIESSSKKTEDLQRLFLLLRSLPLSPLIVLTHMDKVEPLIALDPSNWTLDKVARLRRRVCKLFDVTWAQTFVFVPYSAPKPVVTATTTAKASMRTDVMLRGESGGHFPDLREEGGGEGGGGEGGGGGRSFDIDRSVLFIAKAAFDAAKGKVEANTCISSSSSSNSTTNSSSISGGSSSSSSSSSSKVVAATPAMGRVAEKTTSTPLVTVVKNSPVARQETVELDDSFSSNFQPLT 432
F+ G++V + DNGYW+++SV +P+GL GDVVTVEL A+PKR++MTL+DVK ++ELRV GG E +I RQ + F+ +DFAGDL P +PS +PL L ++G ++AGK+TF+++L +VL SAETD PP +S+ PTT +TR +L S RF PL A E PS+ L + ++ ++ H L F+AA E+E++ K LQ L++ +PL+VLT MDKVEPL+A DP NW+L KV+ +RRR + V+WA T VFVPY+AP+P + AKASMRTDV+++G+ D+RE+ E G RSF ID+ VLFIAKA + A+ K+E SSS+ S + +GG +++ + + P+ +A RQ+TVELD SFSSNF L+
Sbjct: 117 FEPGTKVFMPDNGYWKESSVSVPDGLSPGDVVTVELLAEPKRSKMTLKDVKADIELRVTGPSVTPGGPEMIILRQYVAFDGIDFAGDLFPIPLSPSLGTAPLLLYILGAEQAGKTTFVESLRNVLASAETDM--PPPQTSIVPTTEITRLELNAEAISPRFRAPLTARVTEIPSSMVLAPTDADKASMERLLPAGHGALVFVAADEVETAPAKMAGLQASIQQLKAQNFNPLVVLTRMDKVEPLVAADPFNWSLKKVSHVRRRASQCLGVSWANTLVFVPYAAPRPAM-RPEVAKASMRTDVIIKGKKASSILDMREDTVRE------EGMERSFAIDKLVLFIAKAGLEVAQEKMEGRVRRSSSAGS---AGLGTWTGGRITATPKTDMSMTKTAPSDAMLA-----------------TRQQTVELDGSFSSNFPTLS 527
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO17G02430.2 ID=NO17G02430.2|Name=NO17G02430.2|organism=Nannochloropsis oceanica|type=mRNA|length=2576bp
TAATCACGCCACCTCTATCACCCCCGATCACACCCCAACGGCATCCGACC
AGTTGCCTTCCTTTCGGCCGCCGCAATAAATCTAATGTATTCTACGCCAT
GACTATCAATTGAGCAGCATTCTGCAGGCAAGGCTAAGCTTTTTAAAATA
TGGTCATGGCGCTTTTTGTTTCTCGTGTATACAAGTGCGGAAGAAGTCCC
TTGGGTTGTATCTGTCAAATCAAGCTGGCACTTCTTTCCGCCAGGGACGC
GTTTGATTGAACGGAACCTCCGTAATTGTCCTCCCCCTTAACAAAATGCC
GGAGGACATTGACTCCGTGTTATAACAGGAAGCATTTACCTTTCTCTGGC
CCCGTCGTCGTATGACTCTTTTTTAATCACGACCTCTCAACCTCATTCCC
CCCTCTCCCCTTCCCCCCACGCGCTTCGGAATGGCTACCAGCAGTGAGTC
CCCGATCAAGCTTCTCTGCGCTTTTCCTCGTCTCCTAGCCAGCAAAGCCA
TTCTTCACCCTAAGCGACATACACGAGTACCATGGGTGGATCTTGCTCGC
GCCTTCCGGCTGACCAAATCCATCAGCCCCAGTCAGACTTTCCTATTCGT
CAAGGCAATATCGGCAACTCGATCTTTCCTCTGTTGAGCAACAGTCGGCG
CTTTATGTGGCACATGCACCTCTCCTCTTACTCACTTTCGCTTCTTCTCA
ACCTCATTCCCGAAACACTTCCTCCGTCCCTTAATCCCCTTTTCATTCAT
TCGTAGCCCTACAAGGCAGCTGATGTAAAGACGAAGAAAAGCTGTCCTGC
CGATGGTCCCGGCCCAATCCCCCCTGAGGAGACACAGCAGGAGCGCGGGG
CAGAGGGAACAGCAGCAGGCCTCTCCATCCACACCCGCCGCACCTTTCGT
CCCAAAACCACCAACAAGATCGGACGTAAAGGTGCACTGACTCTGTTGCG
GCCTTCCTCCCTCTGGGCAGCCGGAGAAGCTACAGTGTTGGAAGTGGAGG
TCCGTGTGCCGGTTATGACGCCGTTTAAAGCAGGGTCGCGCGTGGTATTA
GCTGACAACGGTTACTGGCGACAAGCAAGCGTCCCTCTTCCCGAAGGATT
GAAAGCTGGAGACGTGGTGACAGTTGAGCTGCCAGCGAAACCCAAGCGTG
CCCGAATGACCCTGAGGGATGTCAAGGAGGAGGTAGAGCTTCGAGTTGGA
GGAGCGGAGGAAATGATTCAACGGCAGCTACTTATGTTCAATGCGGTTGA
TTTCGCTGGAGACCTGATACCCAAGCTCTCTACGCCGTCTCCCAGTCCTC
TTCAACTTCTCGTGATCGGTGGGGACAAAGCAGGCAAAAGCACCTTCATT
CAAACTCTGGTCTCGGTGCTTAACTCGGCTGAGACCGACTCCACCCCTCC
CCCTGACGCCTCATCCCTCCAGCCTACCACCACCTTGACCCGCACCGACC
TAGGCAACACCAACACCAGCCGTTTCCACACACCCCTCCAGGCCTGCGCC
GTCGAATTTCCCTCCACCGATGCCCTATTTGGGATGGAGGAGGAAGAGCT
GAAGGTCGCCTTCGGTACCGCCCATGCCGTCCTCTTCTTCATCGCTGCCC
ATGAGATAGAGAGCTCCTCCAAGAAGACGGAAGACTTGCAACGCCTCTTC
CTCCTCCTCCGATCCCTCCCTCTCTCTCCCCTCATCGTCCTCACGCACAT
GGACAAAGTTGAGCCATTGATAGCTCTGGATCCGTCCAACTGGACATTGG
ATAAAGTTGCGCGCCTCCGTCGTCGTGTCTGTAAACTTTTCGACGTTACT
TGGGCACAGACTTTTGTTTTTGTGCCTTACTCTGCTCCTAAGCCCGTGGT
AACGGCCACGACAACGGCCAAGGCGAGCATGCGTACTGACGTCATGTTGA
GGGGGGAAAGCGGCGGGCACTTTCCGGATCTGCGGGAGGAGGGCGGGGGG
GAGGGGGGAGGAGGGGAGGGAGGAGGGGGAGGGAGATCTTTTGATATTGA
TAGGTCGGTGTTGTTCATTGCGAAGGCGGCATTCGATGCCGCAAAGGGTA
AGGTGGAGGCGAACACTTGCATCAGCAGCAGCAGCAGCAGTAACAGTACG
ACAAACTCTTCTAGCATCAGCGGCGGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAAGGTGGTGGCGGCGACGCCGGCGATGGGAAGGGTGGCGGAAA
AGACGACGTCTACGCCTCTCGTGACGGTTGTGAAGAACAGCCCTGTGGCA
CGCCAGGAGACTGTGGAGTTGGATGATTCGTTTTCTTCGAATTTTCAACC
CCTAACTTTCTATAGGCGGTAGTGAAAAGAGGGCGGGAACGAAGGGACTT
ATGTAGGCGAGCTTTTTGTATTCTTGACGTTGCGGGGGGTAGAAAGGTGG
TAGTGAGGTATTGTTTTTTCTATATTGAGTTCTCCTTGAGCTGTAATGAG
AGTGGAGGGGAGAGGAGGAGACCCGGAAATGGAAGACTTAGGCTAAGGCT
TTGACTATGGCAATATGTATAAGTATATATAACTTATATAAATATATAAG
AGTACATATATATATATATATATATG back to topprotein sequence of NO17G02430.2 >NO17G02430.2-protein ID=NO17G02430.2-protein|Name=NO17G02430.2|organism=Nannochloropsis oceanica|type=polypeptide|length=436bp
MTPFKAGSRVVLADNGYWRQASVPLPEGLKAGDVVTVELPAKPKRARMTL
RDVKEEVELRVGGAEEMIQRQLLMFNAVDFAGDLIPKLSTPSPSPLQLLV
IGGDKAGKSTFIQTLVSVLNSAETDSTPPPDASSLQPTTTLTRTDLGNTN
TSRFHTPLQACAVEFPSTDALFGMEEEELKVAFGTAHAVLFFIAAHEIES
SSKKTEDLQRLFLLLRSLPLSPLIVLTHMDKVEPLIALDPSNWTLDKVAR
LRRRVCKLFDVTWAQTFVFVPYSAPKPVVTATTTAKASMRTDVMLRGESG
GHFPDLREEGGGEGGGGEGGGGGRSFDIDRSVLFIAKAAFDAAKGKVEAN
TCISSSSSSNSTTNSSSISGGSSSSSSSSSSKVVAATPAMGRVAEKTTST
PLVTVVKNSPVARQETVELDDSFSSNFQPLTFYRR* back to topmRNA from alignment at chr17:714811..717650- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO17G02430.2 ID=NO17G02430.2|Name=NO17G02430.2|organism=Nannochloropsis oceanica|type=mRNA|length=2840bp|location=Sequence derived from alignment at chr17:714811..717650- (Nannochloropsis oceanica)
TAATCACGCCACCTCTATCACCCCCGATCACACCCCAACGGCATCCGACC
AGTTGCCTTCCTTTCGGCCGCCGCAATAAATCTAATGTATTCTACGCCAT
GACTATCAATTGAGCAGCATTCTGCAGGCAAGGCTAAGCTTTTTAAAATA
TGGTCATGGCGCTTTTTGTTTCTCGTGTATACAAGTGCGGAAGAAGTCCC
TTGGGTTGTATCTGTCAAATCAAGCTGGCACTTCTTTCCGCCAGGGACGC
GTTTGATTGAACGGAACCTCCGTAATTGTCCTCCCCCTTAACAAAATGCC
GGAGGACATTGACTCCGTGTTATAACAGGAAGCATTTACCTTTCTCTGGC
CCCGTCGTCGTATGACTCTTTTTTAATCACGACCTCTCAACCTCATTCCC
CCCTCTCCCCTTCCCCCCACGCGCTTCGGAATGGCTACCAGCAGTGAGTC
CCCGATCAAGCTTCTCTGCGCTTTTCCTCGTCTCCTAGCCAGCAAAGCCA
TTCTTCACCCTAAGCGACATACACGAGTACCATGGGTGGATCTTGCTCGC
GCCTTCCGGCTGACCAAATCCATCAGCCCCAGGTGCGTCTTTGTAAACCC
ACAGCCAAAGCAGAGAATAGGCAGCTTGTCTCTGTGCATAGAAGCAGAAC
AGCGCTTGCTTGTGGGGGGATGGATGCCGTGTCTATGAGCCCCTACTTTC
TCTCAACTCCTCGCCCAGAAGCTCTCTTCTCTCCTCTCCTCCCCGTCCTT
CCCCCCCCTTTCCTTTCCTTTCTCCCCTCACACTTCTCCTTTCTATCCCT
CCCTCCTTCTCCCTTCTCTCCATCATCATCCAACTTGAGGATACAGTCAG
ACTTTCCTATTCGTCAAGGCAATATCGGCAACTCGATCTTTCCTCTGTTG
AGCAACAGTCGGCGCTTTATGTGGCACATGCACCTCTCCTCTTACTCACT
TTCGCTTCTTCTCAACCTCATTCCCGAAACACTTCCTCCGTCCCTTAATC
CCCTTTTCATTCATTCGTAGCCCTACAAGGCAGCTGATGTAAAGACGAAG
AAAAGCTGTCCTGCCGATGGTCCCGGCCCAATCCCCCCTGAGGAGACACA
GCAGGAGCGCGGGGCAGAGGGAACAGCAGCAGGCCTCTCCATCCACACCC
GCCGCACCTTTCGTCCCAAAACCACCAACAAGATCGGACGTAAAGGTGCA
CTGACTCTGTTGCGGCCTTCCTCCCTCTGGGCAGCCGGAGAAGCTACAGT
GTTGGAAGTGGAGGTCCGTGTGCCGGTTATGACGCCGTTTAAAGCAGGGT
CGCGCGTGGTATTAGCTGACAACGGTTACTGGCGACAAGCAAGCGTCCCT
CTTCCCGAAGGATTGAAAGCTGGAGACGTGGTGACAGTTGAGCTGCCAGC
GAAACCCAAGCGTGCCCGAATGACCCTGAGGGATGTCAAGGAGGAGGTAG
AGCTTCGAGTTGGAGGAGCGGAGGAAATGATTCAACGGCAGCTACTTATG
TTCAATGCGGTTGATTTCGCTGGAGACCTGATACCCAAGCTCTCTACGCC
GTCTCCCAGTCCTCTTCAACTTCTCGTGATCGGTGGGGACAAAGCAGGCA
AAAGCACCTTCATTCAAACTCTGGTCTCGGTGCTTAACTCGGCTGAGACC
GACTCCACCCCTCCCCCTGACGCCTCATCCCTCCAGCCTACCACCACCTT
GACCCGCACCGACCTAGGCAACACCAACACCAGCCGTTTCCACACACCCC
TCCAGGCCTGCGCCGTCGAATTTCCCTCCACCGATGCCCTATTTGGGATG
GAGGAGGAAGAGCTGAAGGTCGCCTTCGGTACCGCCCATGCCGTCCTCTT
CTTCATCGCTGCCCATGAGATAGAGAGCTCCTCCAAGAAGACGGAAGACT
TGCAACGCCTCTTCCTCCTCCTCCGATCCCTCCCTCTCTCTCCCCTCATC
GTCCTCACGCACATGGACAAAGTTGAGCCATTGATAGCTCTGGATCCGTC
CAACTGGACATTGGATAAAGTTGCGCGCCTCCGTCGTCGTGTCTGTAAAC
TTTTCGACGTTACTTGGGCACAGACTTTTGTTTTTGTGCCTTACTCTGCT
CCTAAGCCCGTGGTAACGGCCACGACAACGGCCAAGGCGAGCATGCGTAC
TGACGTCATGTTGAGGGGGGAAAGCGGCGGGCACTTTCCGGATCTGCGGG
AGGAGGGCGGGGGGGAGGGGGGAGGAGGGGAGGGAGGAGGGGGAGGGAGA
TCTTTTGATATTGATAGGTCGGTGTTGTTCATTGCGAAGGCGGCATTCGA
TGCCGCAAAGGGTAAGGTGGAGGCGAACACTTGCATCAGCAGCAGCAGCA
GCAGTAACAGTACGACAAACTCTTCTAGCATCAGCGGCGGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAAGGTGGTGGCGGCGACGCCGGCGATGGG
AAGGGTGGCGGAAAAGACGACGTCTACGCCTCTCGTGACGGTTGTGAAGA
ACAGCCCTGTGGCACGCCAGGAGACTGTGGAGTTGGATGATTCGTTTTCT
TCGAATTTTCAACCCCTAACTTTCTATAGGCGGTAGTGAAAAGAGGGCGG
GAACGAAGGGACTTATGTAGGCGAGCTTTTTGTATTCTTGACGTTGCGGG
GGGTAGAAAGGTGGTAGTGAGGTATTGTTTTTTCTATATTGAGTTCTCCT
TGAGCTGTAATGAGAGTGGAGGGGAGAGGAGGAGACCCGGAAATGGAAGA
CTTAGGCTAAGGCTTTGACTATGGCAATATGTATAAGTATATATAACTTA
TATAAATATATAAGAGTACATATATATATATATATATATG back to topCoding sequence (CDS) from alignment at chr17:714811..717650- >NO17G02430.2 ID=NO17G02430.2|Name=NO17G02430.2|organism=Nannochloropsis oceanica|type=CDS|length=1308bp|location=Sequence derived from alignment at chr17:714811..717650- (Nannochloropsis oceanica)
ATGACGCCGTTTAAAGCAGGGTCGCGCGTGGTATTAGCTGACAACGGTTA
CTGGCGACAAGCAAGCGTCCCTCTTCCCGAAGGATTGAAAGCTGGAGACG
TGGTGACAGTTGAGCTGCCAGCGAAACCCAAGCGTGCCCGAATGACCCTG
AGGGATGTCAAGGAGGAGGTAGAGCTTCGAGTTGGAGGAGCGGAGGAAAT
GATTCAACGGCAGCTACTTATGTTCAATGCGGTTGATTTCGCTGGAGACC
TGATACCCAAGCTCTCTACGCCGTCTCCCAGTCCTCTTCAACTTCTCGTG
ATCGGTGGGGACAAAGCAGGCAAAAGCACCTTCATTCAAACTCTGGTCTC
GGTGCTTAACTCGGCTGAGACCGACTCCACCCCTCCCCCTGACGCCTCAT
CCCTCCAGCCTACCACCACCTTGACCCGCACCGACCTAGGCAACACCAAC
ACCAGCCGTTTCCACACACCCCTCCAGGCCTGCGCCGTCGAATTTCCCTC
CACCGATGCCCTATTTGGGATGGAGGAGGAAGAGCTGAAGGTCGCCTTCG
GTACCGCCCATGCCGTCCTCTTCTTCATCGCTGCCCATGAGATAGAGAGC
TCCTCCAAGAAGACGGAAGACTTGCAACGCCTCTTCCTCCTCCTCCGATC
CCTCCCTCTCTCTCCCCTCATCGTCCTCACGCACATGGACAAAGTTGAGC
CATTGATAGCTCTGGATCCGTCCAACTGGACATTGGATAAAGTTGCGCGC
CTCCGTCGTCGTGTCTGTAAACTTTTCGACGTTACTTGGGCACAGACTTT
TGTTTTTGTGCCTTACTCTGCTCCTAAGCCCGTGGTAACGGCCACGACAA
CGGCCAAGGCGAGCATGCGTACTGACGTCATGTTGAGGGGGGAAAGCGGC
GGGCACTTTCCGGATCTGCGGGAGGAGGGCGGGGGGGAGGGGGGAGGAGG
GGAGGGAGGAGGGGGAGGGAGATCTTTTGATATTGATAGGTCGGTGTTGT
TCATTGCGAAGGCGGCATTCGATGCCGCAAAGGGTAAGGTGGAGGCGAAC
ACTTGCATCAGCAGCAGCAGCAGCAGTAACAGTACGACAAACTCTTCTAG
CATCAGCGGCGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAAGGTGG
TGGCGGCGACGCCGGCGATGGGAAGGGTGGCGGAAAAGACGACGTCTACG
CCTCTCGTGACGGTTGTGAAGAACAGCCCTGTGGCACGCCAGGAGACTGT
GGAGTTGGATGATTCGTTTTCTTCGAATTTTCAACCCCTAACTTTCTATA
GGCGGTAG back to top
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