NO17G02430.2, NO17G02430.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO17G02430.2
Unique NameNO17G02430.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2576
Alignment locationchr17:714811..717650 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:714811..717650 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO17G02430.2 vs.
Match: XP_005854034.1 (hypothetical protein NGA_0458600 [Nannochloropsis gaditana CCMP526]; EKU22327.1 hypothetical protein NGA_0458600 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 279.3 bits (713), Expect = 2.100e-71
Identity = 185/440 (42.05%), Postives = 264/440 (60.00%), Query Frame = 0
Query:    4 FKAGSRVVLADNGYWRQASVPLPEGLKAGDVVTVELPAKPKRARMTLRDVKEEVELRV-------GGAEEMIQRQLLMFNAVDFAGDLIPKLSTPS--PSPLQLLVIGGDKAGKSTFIQTLVSVLNSAETDSTPPPDASSLQPTTTLTRTDLGNTNTS-RFHTPLQACAVEFPSTDALFGMEEEE--LKVAFGTAHAVLFFIAAHEIESSSKKTEDLQRLFLLLRSLPLSPLIVLTHMDKVEPLIALDPSNWTLDKVARLRRRVCKLFDVTWAQTFVFVPYSAPKPVVTATTTAKASMRTDVMLRGESGGHFPDLREEGGGEGGGGEGGGGGRSFDIDRSVLFIAKAAFDAAKGKVEANTCISSSSSSNSTTNSSSISGGSSSSSSSSSSKVVAATPAMGRVAEKTTSTPLVTVVKNSPVARQETVELDDSFSSNFQPLT 432
            F+ G++V + DNGYW+++SV +P+GL  GDVVTVEL A+PKR++MTL+DVK ++ELRV       GG E +I RQ + F+ +DFAGDL P   +PS   +PL L ++G ++AGK+TF+++L +VL SAETD   PP  +S+ PTT +TR +L     S RF  PL A   E PS+  L   + ++  ++      H  L F+AA E+E++  K   LQ     L++   +PL+VLT MDKVEPL+A DP NW+L KV+ +RRR  +   V+WA T VFVPY+AP+P +     AKASMRTDV+++G+      D+RE+   E       G  RSF ID+ VLFIAKA  + A+ K+E     SSS+ S       + +GG  +++  +   +    P+   +A                  RQ+TVELD SFSSNF  L+
Sbjct:  117 FEPGTKVFMPDNGYWKESSVSVPDGLSPGDVVTVELLAEPKRSKMTLKDVKADIELRVTGPSVTPGGPEMIILRQYVAFDGIDFAGDLFPIPLSPSLGTAPLLLYILGAEQAGKTTFVESLRNVLASAETDM--PPPQTSIVPTTEITRLELNAEAISPRFRAPLTARVTEIPSSMVLAPTDADKASMERLLPAGHGALVFVAADEVETAPAKMAGLQASIQQLKAQNFNPLVVLTRMDKVEPLVAADPFNWSLKKVSHVRRRASQCLGVSWANTLVFVPYAAPRPAM-RPEVAKASMRTDVIIKGKKASSILDMREDTVRE------EGMERSFAIDKLVLFIAKAGLEVAQEKMEGRVRRSSSAGS---AGLGTWTGGRITATPKTDMSMTKTAPSDAMLA-----------------TRQQTVELDGSFSSNFPTLS 527          
The following BLAST results are available for this feature:
BLAST of NO17G02430.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854034.12.100e-7142.05hypothetical protein NGA_0458600 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO17G02430NO17G02430Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO17G02430.2NO17G02430.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO17G02430.2.cds1NO17G02430.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO17G02430.2 ID=NO17G02430.2|Name=NO17G02430.2|organism=Nannochloropsis oceanica|type=mRNA|length=2576bp
TAATCACGCCACCTCTATCACCCCCGATCACACCCCAACGGCATCCGACC
AGTTGCCTTCCTTTCGGCCGCCGCAATAAATCTAATGTATTCTACGCCAT
GACTATCAATTGAGCAGCATTCTGCAGGCAAGGCTAAGCTTTTTAAAATA
TGGTCATGGCGCTTTTTGTTTCTCGTGTATACAAGTGCGGAAGAAGTCCC
TTGGGTTGTATCTGTCAAATCAAGCTGGCACTTCTTTCCGCCAGGGACGC
GTTTGATTGAACGGAACCTCCGTAATTGTCCTCCCCCTTAACAAAATGCC
GGAGGACATTGACTCCGTGTTATAACAGGAAGCATTTACCTTTCTCTGGC
CCCGTCGTCGTATGACTCTTTTTTAATCACGACCTCTCAACCTCATTCCC
CCCTCTCCCCTTCCCCCCACGCGCTTCGGAATGGCTACCAGCAGTGAGTC
CCCGATCAAGCTTCTCTGCGCTTTTCCTCGTCTCCTAGCCAGCAAAGCCA
TTCTTCACCCTAAGCGACATACACGAGTACCATGGGTGGATCTTGCTCGC
GCCTTCCGGCTGACCAAATCCATCAGCCCCAGTCAGACTTTCCTATTCGT
CAAGGCAATATCGGCAACTCGATCTTTCCTCTGTTGAGCAACAGTCGGCG
CTTTATGTGGCACATGCACCTCTCCTCTTACTCACTTTCGCTTCTTCTCA
ACCTCATTCCCGAAACACTTCCTCCGTCCCTTAATCCCCTTTTCATTCAT
TCGTAGCCCTACAAGGCAGCTGATGTAAAGACGAAGAAAAGCTGTCCTGC
CGATGGTCCCGGCCCAATCCCCCCTGAGGAGACACAGCAGGAGCGCGGGG
CAGAGGGAACAGCAGCAGGCCTCTCCATCCACACCCGCCGCACCTTTCGT
CCCAAAACCACCAACAAGATCGGACGTAAAGGTGCACTGACTCTGTTGCG
GCCTTCCTCCCTCTGGGCAGCCGGAGAAGCTACAGTGTTGGAAGTGGAGG
TCCGTGTGCCGGTTATGACGCCGTTTAAAGCAGGGTCGCGCGTGGTATTA
GCTGACAACGGTTACTGGCGACAAGCAAGCGTCCCTCTTCCCGAAGGATT
GAAAGCTGGAGACGTGGTGACAGTTGAGCTGCCAGCGAAACCCAAGCGTG
CCCGAATGACCCTGAGGGATGTCAAGGAGGAGGTAGAGCTTCGAGTTGGA
GGAGCGGAGGAAATGATTCAACGGCAGCTACTTATGTTCAATGCGGTTGA
TTTCGCTGGAGACCTGATACCCAAGCTCTCTACGCCGTCTCCCAGTCCTC
TTCAACTTCTCGTGATCGGTGGGGACAAAGCAGGCAAAAGCACCTTCATT
CAAACTCTGGTCTCGGTGCTTAACTCGGCTGAGACCGACTCCACCCCTCC
CCCTGACGCCTCATCCCTCCAGCCTACCACCACCTTGACCCGCACCGACC
TAGGCAACACCAACACCAGCCGTTTCCACACACCCCTCCAGGCCTGCGCC
GTCGAATTTCCCTCCACCGATGCCCTATTTGGGATGGAGGAGGAAGAGCT
GAAGGTCGCCTTCGGTACCGCCCATGCCGTCCTCTTCTTCATCGCTGCCC
ATGAGATAGAGAGCTCCTCCAAGAAGACGGAAGACTTGCAACGCCTCTTC
CTCCTCCTCCGATCCCTCCCTCTCTCTCCCCTCATCGTCCTCACGCACAT
GGACAAAGTTGAGCCATTGATAGCTCTGGATCCGTCCAACTGGACATTGG
ATAAAGTTGCGCGCCTCCGTCGTCGTGTCTGTAAACTTTTCGACGTTACT
TGGGCACAGACTTTTGTTTTTGTGCCTTACTCTGCTCCTAAGCCCGTGGT
AACGGCCACGACAACGGCCAAGGCGAGCATGCGTACTGACGTCATGTTGA
GGGGGGAAAGCGGCGGGCACTTTCCGGATCTGCGGGAGGAGGGCGGGGGG
GAGGGGGGAGGAGGGGAGGGAGGAGGGGGAGGGAGATCTTTTGATATTGA
TAGGTCGGTGTTGTTCATTGCGAAGGCGGCATTCGATGCCGCAAAGGGTA
AGGTGGAGGCGAACACTTGCATCAGCAGCAGCAGCAGCAGTAACAGTACG
ACAAACTCTTCTAGCATCAGCGGCGGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAAGGTGGTGGCGGCGACGCCGGCGATGGGAAGGGTGGCGGAAA
AGACGACGTCTACGCCTCTCGTGACGGTTGTGAAGAACAGCCCTGTGGCA
CGCCAGGAGACTGTGGAGTTGGATGATTCGTTTTCTTCGAATTTTCAACC
CCTAACTTTCTATAGGCGGTAGTGAAAAGAGGGCGGGAACGAAGGGACTT
ATGTAGGCGAGCTTTTTGTATTCTTGACGTTGCGGGGGGTAGAAAGGTGG
TAGTGAGGTATTGTTTTTTCTATATTGAGTTCTCCTTGAGCTGTAATGAG
AGTGGAGGGGAGAGGAGGAGACCCGGAAATGGAAGACTTAGGCTAAGGCT
TTGACTATGGCAATATGTATAAGTATATATAACTTATATAAATATATAAG
AGTACATATATATATATATATATATG
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protein sequence of NO17G02430.2

>NO17G02430.2-protein ID=NO17G02430.2-protein|Name=NO17G02430.2|organism=Nannochloropsis oceanica|type=polypeptide|length=436bp
MTPFKAGSRVVLADNGYWRQASVPLPEGLKAGDVVTVELPAKPKRARMTL
RDVKEEVELRVGGAEEMIQRQLLMFNAVDFAGDLIPKLSTPSPSPLQLLV
IGGDKAGKSTFIQTLVSVLNSAETDSTPPPDASSLQPTTTLTRTDLGNTN
TSRFHTPLQACAVEFPSTDALFGMEEEELKVAFGTAHAVLFFIAAHEIES
SSKKTEDLQRLFLLLRSLPLSPLIVLTHMDKVEPLIALDPSNWTLDKVAR
LRRRVCKLFDVTWAQTFVFVPYSAPKPVVTATTTAKASMRTDVMLRGESG
GHFPDLREEGGGEGGGGEGGGGGRSFDIDRSVLFIAKAAFDAAKGKVEAN
TCISSSSSSNSTTNSSSISGGSSSSSSSSSSKVVAATPAMGRVAEKTTST
PLVTVVKNSPVARQETVELDDSFSSNFQPLTFYRR*
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mRNA from alignment at chr17:714811..717650-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO17G02430.2 ID=NO17G02430.2|Name=NO17G02430.2|organism=Nannochloropsis oceanica|type=mRNA|length=2840bp|location=Sequence derived from alignment at chr17:714811..717650- (Nannochloropsis oceanica)
TAATCACGCCACCTCTATCACCCCCGATCACACCCCAACGGCATCCGACC AGTTGCCTTCCTTTCGGCCGCCGCAATAAATCTAATGTATTCTACGCCAT GACTATCAATTGAGCAGCATTCTGCAGGCAAGGCTAAGCTTTTTAAAATA TGGTCATGGCGCTTTTTGTTTCTCGTGTATACAAGTGCGGAAGAAGTCCC TTGGGTTGTATCTGTCAAATCAAGCTGGCACTTCTTTCCGCCAGGGACGC GTTTGATTGAACGGAACCTCCGTAATTGTCCTCCCCCTTAACAAAATGCC GGAGGACATTGACTCCGTGTTATAACAGGAAGCATTTACCTTTCTCTGGC CCCGTCGTCGTATGACTCTTTTTTAATCACGACCTCTCAACCTCATTCCC CCCTCTCCCCTTCCCCCCACGCGCTTCGGAATGGCTACCAGCAGTGAGTC CCCGATCAAGCTTCTCTGCGCTTTTCCTCGTCTCCTAGCCAGCAAAGCCA TTCTTCACCCTAAGCGACATACACGAGTACCATGGGTGGATCTTGCTCGC GCCTTCCGGCTGACCAAATCCATCAGCCCCAGGTGCGTCTTTGTAAACCC ACAGCCAAAGCAGAGAATAGGCAGCTTGTCTCTGTGCATAGAAGCAGAAC AGCGCTTGCTTGTGGGGGGATGGATGCCGTGTCTATGAGCCCCTACTTTC TCTCAACTCCTCGCCCAGAAGCTCTCTTCTCTCCTCTCCTCCCCGTCCTT CCCCCCCCTTTCCTTTCCTTTCTCCCCTCACACTTCTCCTTTCTATCCCT CCCTCCTTCTCCCTTCTCTCCATCATCATCCAACTTGAGGATACAGTCAG ACTTTCCTATTCGTCAAGGCAATATCGGCAACTCGATCTTTCCTCTGTTG AGCAACAGTCGGCGCTTTATGTGGCACATGCACCTCTCCTCTTACTCACT TTCGCTTCTTCTCAACCTCATTCCCGAAACACTTCCTCCGTCCCTTAATC CCCTTTTCATTCATTCGTAGCCCTACAAGGCAGCTGATGTAAAGACGAAG AAAAGCTGTCCTGCCGATGGTCCCGGCCCAATCCCCCCTGAGGAGACACA GCAGGAGCGCGGGGCAGAGGGAACAGCAGCAGGCCTCTCCATCCACACCC GCCGCACCTTTCGTCCCAAAACCACCAACAAGATCGGACGTAAAGGTGCA CTGACTCTGTTGCGGCCTTCCTCCCTCTGGGCAGCCGGAGAAGCTACAGT GTTGGAAGTGGAGGTCCGTGTGCCGGTTATGACGCCGTTTAAAGCAGGGT CGCGCGTGGTATTAGCTGACAACGGTTACTGGCGACAAGCAAGCGTCCCT CTTCCCGAAGGATTGAAAGCTGGAGACGTGGTGACAGTTGAGCTGCCAGC GAAACCCAAGCGTGCCCGAATGACCCTGAGGGATGTCAAGGAGGAGGTAG AGCTTCGAGTTGGAGGAGCGGAGGAAATGATTCAACGGCAGCTACTTATG TTCAATGCGGTTGATTTCGCTGGAGACCTGATACCCAAGCTCTCTACGCC GTCTCCCAGTCCTCTTCAACTTCTCGTGATCGGTGGGGACAAAGCAGGCA AAAGCACCTTCATTCAAACTCTGGTCTCGGTGCTTAACTCGGCTGAGACC GACTCCACCCCTCCCCCTGACGCCTCATCCCTCCAGCCTACCACCACCTT GACCCGCACCGACCTAGGCAACACCAACACCAGCCGTTTCCACACACCCC TCCAGGCCTGCGCCGTCGAATTTCCCTCCACCGATGCCCTATTTGGGATG GAGGAGGAAGAGCTGAAGGTCGCCTTCGGTACCGCCCATGCCGTCCTCTT CTTCATCGCTGCCCATGAGATAGAGAGCTCCTCCAAGAAGACGGAAGACT TGCAACGCCTCTTCCTCCTCCTCCGATCCCTCCCTCTCTCTCCCCTCATC GTCCTCACGCACATGGACAAAGTTGAGCCATTGATAGCTCTGGATCCGTC CAACTGGACATTGGATAAAGTTGCGCGCCTCCGTCGTCGTGTCTGTAAAC TTTTCGACGTTACTTGGGCACAGACTTTTGTTTTTGTGCCTTACTCTGCT CCTAAGCCCGTGGTAACGGCCACGACAACGGCCAAGGCGAGCATGCGTAC TGACGTCATGTTGAGGGGGGAAAGCGGCGGGCACTTTCCGGATCTGCGGG AGGAGGGCGGGGGGGAGGGGGGAGGAGGGGAGGGAGGAGGGGGAGGGAGA TCTTTTGATATTGATAGGTCGGTGTTGTTCATTGCGAAGGCGGCATTCGA TGCCGCAAAGGGTAAGGTGGAGGCGAACACTTGCATCAGCAGCAGCAGCA GCAGTAACAGTACGACAAACTCTTCTAGCATCAGCGGCGGCAGCAGCAGC AGCAGCAGCAGCAGCAGCAGCAAGGTGGTGGCGGCGACGCCGGCGATGGG AAGGGTGGCGGAAAAGACGACGTCTACGCCTCTCGTGACGGTTGTGAAGA ACAGCCCTGTGGCACGCCAGGAGACTGTGGAGTTGGATGATTCGTTTTCT TCGAATTTTCAACCCCTAACTTTCTATAGGCGGTAGTGAAAAGAGGGCGG GAACGAAGGGACTTATGTAGGCGAGCTTTTTGTATTCTTGACGTTGCGGG GGGTAGAAAGGTGGTAGTGAGGTATTGTTTTTTCTATATTGAGTTCTCCT TGAGCTGTAATGAGAGTGGAGGGGAGAGGAGGAGACCCGGAAATGGAAGA CTTAGGCTAAGGCTTTGACTATGGCAATATGTATAAGTATATATAACTTA TATAAATATATAAGAGTACATATATATATATATATATATG
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Coding sequence (CDS) from alignment at chr17:714811..717650-

>NO17G02430.2 ID=NO17G02430.2|Name=NO17G02430.2|organism=Nannochloropsis oceanica|type=CDS|length=1308bp|location=Sequence derived from alignment at chr17:714811..717650- (Nannochloropsis oceanica)
ATGACGCCGTTTAAAGCAGGGTCGCGCGTGGTATTAGCTGACAACGGTTA
CTGGCGACAAGCAAGCGTCCCTCTTCCCGAAGGATTGAAAGCTGGAGACG
TGGTGACAGTTGAGCTGCCAGCGAAACCCAAGCGTGCCCGAATGACCCTG
AGGGATGTCAAGGAGGAGGTAGAGCTTCGAGTTGGAGGAGCGGAGGAAAT
GATTCAACGGCAGCTACTTATGTTCAATGCGGTTGATTTCGCTGGAGACC
TGATACCCAAGCTCTCTACGCCGTCTCCCAGTCCTCTTCAACTTCTCGTG
ATCGGTGGGGACAAAGCAGGCAAAAGCACCTTCATTCAAACTCTGGTCTC
GGTGCTTAACTCGGCTGAGACCGACTCCACCCCTCCCCCTGACGCCTCAT
CCCTCCAGCCTACCACCACCTTGACCCGCACCGACCTAGGCAACACCAAC
ACCAGCCGTTTCCACACACCCCTCCAGGCCTGCGCCGTCGAATTTCCCTC
CACCGATGCCCTATTTGGGATGGAGGAGGAAGAGCTGAAGGTCGCCTTCG
GTACCGCCCATGCCGTCCTCTTCTTCATCGCTGCCCATGAGATAGAGAGC
TCCTCCAAGAAGACGGAAGACTTGCAACGCCTCTTCCTCCTCCTCCGATC
CCTCCCTCTCTCTCCCCTCATCGTCCTCACGCACATGGACAAAGTTGAGC
CATTGATAGCTCTGGATCCGTCCAACTGGACATTGGATAAAGTTGCGCGC
CTCCGTCGTCGTGTCTGTAAACTTTTCGACGTTACTTGGGCACAGACTTT
TGTTTTTGTGCCTTACTCTGCTCCTAAGCCCGTGGTAACGGCCACGACAA
CGGCCAAGGCGAGCATGCGTACTGACGTCATGTTGAGGGGGGAAAGCGGC
GGGCACTTTCCGGATCTGCGGGAGGAGGGCGGGGGGGAGGGGGGAGGAGG
GGAGGGAGGAGGGGGAGGGAGATCTTTTGATATTGATAGGTCGGTGTTGT
TCATTGCGAAGGCGGCATTCGATGCCGCAAAGGGTAAGGTGGAGGCGAAC
ACTTGCATCAGCAGCAGCAGCAGCAGTAACAGTACGACAAACTCTTCTAG
CATCAGCGGCGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAAGGTGG
TGGCGGCGACGCCGGCGATGGGAAGGGTGGCGGAAAAGACGACGTCTACG
CCTCTCGTGACGGTTGTGAAGAACAGCCCTGTGGCACGCCAGGAGACTGT
GGAGTTGGATGATTCGTTTTCTTCGAATTTTCAACCCCTAACTTTCTATA
GGCGGTAG
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Synonyms
Publications