NO17G01810, NO17G01810 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO17G01810 vs. NCBI_GenBank
Match: EWM24234.1 (pentatricopeptide repeat-containing protein [Nannochloropsis gaditana]) HSP 1 Score: 613.2 bits (1580), Expect = 1.400e-171 Identity = 583/848 (68.75%), Postives = 639/848 (75.35%), Query Frame = 0 Query: 126 REWESMTGNLDGDNMLLQATAPAKGVAXXXXXXXXXXXXXXXXXXXPFRVDQEDYDDMANAGGQAAASWREAQRLETGPMWRNHRFEVTVRKPLGLYMSEGVKKGGAPTVSEIRSXXXXXXXXXXXXXXXXXXXXXXXXXXWTKTTLVGVESAINSRFRFSDDITFCVERSLAQDAGEDSIFSRPVEVFEVELERPVPLEFMQEDAEGGVFVRRVLKSDSPALQLIQPFDRVIAVSASLGDRMWRTNSLDGVLSALCTRIGSKVRLQFERSPEVARLVARGAGRGPVARSPNLSASITPNRGP-TAWAAASLLSPRLTVSEETDGNGMLLMGELRVHAVLSQMAAALRERDADRAVSVYKLAVERGLTPDAHCCSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFREELPKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVARDVTSCVWRLKCFVELGDLEAIEGLIREMEECGVPLNVVVYNQYLRGAMRLGQYELALQIFTSMLEKKLPPNLETHQCLLEMPALGTAAAISGVAEGEKERKQMESARDQLVMFYHAALQRLAQHKIRARVTFYVAFMHACLRTDRLDLAAEILALRRANTLQIFQLFKKHQETVEKWEGKIDRELNKRFYLNKNLV 973 R W+ M G D + +LL+A +P +G++ P D+E D NAG +SW EA RLE G + RNHRFEVT++KPLG++MSEG GAPT+SE+R WTKTTLVGVESAINSRFRFSDDITFCVER+LAQDAG+DSI SR VEVFEVELERPVPLE+MQE+AEGGVFVRRVLK+D AL+ IQP+DRV+AVSASLGDRMWRTNSLDGVLSALCTRIGSKVRLQFERSPEVARL+ARGAG V A + P P + AAASLLSP T G MLLMGE RVHAVLSQMA ALR RD D A+S++KLAVERGLTPDAHCCS XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX FREE+P+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX G+ARDVTSCVWRLKCFVELGDLE IE LI+EM++ G+ LNVVVYNQYLRGAMR G+YELALQI +++ EK+L PNLETHQCLLEMP T A+SG+A G+ QME AR+QLVMFYHAAL+ LA+ K+RARV YVA +HACLRTDRLDLAAE++ALRRANTLQIFQLFKKH+E V +WE KIDREL+ RFY NKNLV Sbjct: 135 RGWDGMMGAPDKEEVLLRAASPVRGMS--------EKPQARWQGEGPDARDEEGQDRAGNAG----SSWMEALRLEKGALRRNHRFEVTIQKPLGIFMSEGEADVGAPTISEVRLGSNADKAGLRVGDRIVAASATVGNKLWTKTTLVGVESAINSRFRFSDDITFCVERTLAQDAGDDSIASRQVEVFEVELERPVPLEWMQENAEGGVFVRRVLKADCEALRRIQPYDRVVAVSASLGDRMWRTNSLDGVLSALCTRIGSKVRLQFERSPEVARLIARGAGNPGVG-----VADLVPPLPPRPSMAAASLLSPPSTADLVAKGE-MLLMGEPRVHAVLSQMAGALRARDPDLAISIFKLAVERGLTPDAHCCSSLIKAYGMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLFREEVPRHGLVPDIFSYTVLVNMYGKRGELAEALALFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLYSLAVDMFAKAGDTTQAVTIFKEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGLARDVTSCVWRLKCFVELGDLEGIENLIQEMQDSGIHLNVVVYNQYLRGAMRSGRYELALQILSALFEKRLLPNLETHQCLLEMPTPSTGGAVSGLAHGDGVESQMEEAREQLVMFYHAALKLLAEQKVRARVNLYVACLHACLRTDRLDLAAEVMALRRANTLQIFQLFKKHEEKVHRWERKIDRELDARFYSNKNLV 964
BLAST of NO17G01810 vs. NCBI_GenBank
Match: XP_005854039.1 (hypothetical protein NGA_2025420 [Nannochloropsis gaditana CCMP526] >XP_005856315.1 hypothetical protein NGA_2025410 [Nannochloropsis gaditana CCMP526] >EKU20038.1 hypothetical protein NGA_2025410 [Nannochloropsis gaditana CCMP526] >EKU22318.1 hypothetical protein NGA_2025420 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 301.2 bits (770), Expect = 1.200e-77 Identity = 148/200 (74.00%), Postives = 171/200 (85.50%), Query Frame = 0 Query: 773 GVARDVTSCVWRLKCFVELGDLEAIEGLIREMEECGVPLNVVVYNQYLRGAMRLGQYELALQIFTSMLEKKLPPNLETHQCLLEMPALGTAAAISGVAEGEKERKQMESARDQLVMFYHAALQRLAQHKIRARVTFYVAFMHACLRTDRLDLAAEILALRRANTLQIFQLFKKHQETVEKWEGKIDRELNKRFYLNKNLV 973 G+ARDVTSCVWRLKCFVELGDLE IE LI+EM++ G+ LNVVVYNQYLRGAMR G+YELALQI +++ EK+L PNLETHQCLLEMP T A+SG+A G+ QME AR+QLVMFYHAAL+ LA+ K+RARV YVA +HACLRTDRLDLAAE++ALRRANTLQIFQLFKKH+E V +WE KIDREL+ RFY NKNLV Sbjct: 328 GLARDVTSCVWRLKCFVELGDLEGIENLIQEMQDSGIHLNVVVYNQYLRGAMRSGRYELALQILSALFEKRLLPNLETHQCLLEMPTPSTGGAVSGLAHGDGVESQMEEAREQLVMFYHAALKLLAEQKVRARVNLYVACLHACLRTDRLDLAAEVMALRRANTLQIFQLFKKHEEKVHRWERKIDRELDARFYSNKNLV 527
BLAST of NO17G01810 vs. NCBI_GenBank
Match: XP_005854041.1 (hypothetical protein NGA_2094920, partial [Nannochloropsis gaditana CCMP526] >XP_005856321.1 hypothetical protein NGA_2094910, partial [Nannochloropsis gaditana CCMP526] >EKU20044.1 hypothetical protein NGA_2094910, partial [Nannochloropsis gaditana CCMP526] >EKU22320.1 hypothetical protein NGA_2094920, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 255.0 bits (650), Expect = 9.500e-64 Identity = 138/245 (56.33%), Postives = 162/245 (66.12%), Query Frame = 0 Query: 126 REWESMTGNLDGDNMLLQATAPAKGVAXXXXXXXXXXXXXXXXXXXPFRVDQEDYDDMANAGGQAAASWREAQRLETGPMWRNHRFEVTVRKPLGLYMSEGVKKGGAPTVSEIRSXXXXXXXXXXXXXXXXXXXXXXXXXXWTKTTLVGVESAINSRFRFSDDITFCVERSLAQDAGEDSIFSRPVEVFEVELERPVPLEFMQEDAEGGVFVRRVLKSDSPALQLIQPFDRVIAVSASLGDRMWR 371 R W+ M G D + +LL+A +P +G++ P ++E D N G +SW EA RLE G + RNHRFEVT+RKPLG++MSEG GAPT+SE+R WTKTTLVGVESAINSRFRFSDDITFCVER+LAQDAG+DSI SR VEVFEVELERPVPLE MQE+AEGGVFVRRVLK+D AL+ IQP+DRV+AVSASLGDRMWR Sbjct: 135 RGWDGMMGAPDKEEVLLRAASPVRGMS--------EKPQARWQGEGPDGREEEGQDRAGNVG----SSWMEALRLEKGALRRNHRFEVTIRKPLGIFMSEGEADVGAPTISEVRLGSNADKAGLRVGDRIVAASATVGNKLWTKTTLVGVESAINSRFRFSDDITFCVERTLAQDAGDDSIASRQVEVFEVELERPVPLELMQENAEGGVFVRRVLKADCEALRRIQPYDRVVAVSASLGDRMWR 367
BLAST of NO17G01810 vs. NCBI_GenBank
Match: CBJ31419.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 81.6 bits (200), Expect = 1.400e-11 Identity = 61/212 (28.77%), Postives = 98/212 (46.23%), Query Frame = 0 Query: 202 TGPMWR------NHRFEVTVRKPLGLYMSEGVKKGGAPTVSEIRSXXXXXXXXXXXXXXXXXXXXXXXXXXWTKTTLVGVESAINSRFRFSDDITFCVERSL-AQDAGEDSIFSRPVEVFEVELERPVPLEFMQ-------EDAEGGVFVRRVLKSDSPALQLIQPFDRVIAVSASLGDRMWRTNSLDGVLSALCTRIGSKVRLQFERSPEV 400 T P+WR + +V V++PLGL ++E G VS +R+ W K T+ G+ SA+ +R FS+ +T VER+L AQ + +EV L+RP L Q A+ V V S + + ++ D V+AVS+S+G+ MW L+G LSA+ IGS + ++F+R+ ++ Sbjct: 272 TAPVWRVDLKRGVYTGDVKVKQPLGLDLAE---CSGGVCVSRVRAGCSAERQGVRAGDRIVATSATLGDVLWEKNTVDGILSAVGTRLVFSNTVTLRVERALDAQQLAAARFRESVTQTYEVTLQRPPGLILEQVWDPAGSGQADSVVVAGIVPGSPAESSGAVECGDTVVAVSSSIGNIMWPYRQLEGALSAIERHIGSTINIRFQRTVQM 480
BLAST of NO17G01810 vs. NCBI_GenBank
Match: XP_002286753.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED96394.1 predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 74.7 bits (182), Expect = 1.800e-9 Identity = 64/194 (32.99%), Postives = 97/194 (50.00%), Query Frame = 0 Query: 267 WTKTTLVGVESAINSRFRFSDDITFCVERSLAQDAGEDSIFSRPVEVFEVELERPVPLEFMQEDAEGGVFVRRVL-KSDSPALQLIQPFDRVIAVSASLGDRMWRTNSLDGVLSALCTRI-GSKVRLQFERSPEVARLVARG----AGRGPVARSPNLSASITPNRGPTAWAAASLLSPRLTVSEETDGNGMLL 455 W K+TL GV SAI+SR S + F +R + + G D + + FE+ L RP+ + ++E +G V V + K+ S ++ DRV+ V +SLG +MW + DG+ SA+ +R+ G VR+ FER E A G A VARS + + ++AA+S R T +T MLL Sbjct: 295 WPKSTLDGVRSAISSRKVISPMMDFEFKRLGSNEEGGDDL--GEISSFELNLSRPIGIN-VEETDDGYVVVTGISGKASSVVTDNLRVGDRVVTVESSLGGKMWPVYNTDGLTSAVTSRLPGQPVRIGFERVEEAVEATANGDEDEAVAPKVARSEAVVGYRQASEKVASFAASSTQQVRSTA--QTAAQKMLL 483
BLAST of NO17G01810 vs. NCBI_GenBank
Match: EJK75451.1 (hypothetical protein THAOC_02824 [Thalassiosira oceanica]) HSP 1 Score: 72.8 bits (177), Expect = 6.700e-9 Identity = 50/131 (38.17%), Postives = 74/131 (56.49%), Query Frame = 0 Query: 267 WTKTTLVGVESAINSRFRFSDDITFCVERSLAQDAGEDSIFSRPVEVFEVELERPVPLEFMQEDAEGGVFVRRVLKSDSP-ALQLIQPFDRVIAVSASLGDRMWRTNSLDGVLSALCTRI-GSKVRLQFER 396 W K+TL GV SAI+SR S + F R + GED I VE FE+ L RP+ + ++E +G V V + +P + +Q DRV++V +S G +MW + DG+ SA+ +R+ G VR+ FER Sbjct: 269 WPKSTLDGVRSAISSRRVMSSSMDFEFRRRV---NGED-IGVEAVESFELSLSRPIGIN-IEETDDGYVTVTGISDKAAPEVVDNLQIGDRVVSVESSFGGKMWEVYNADGLTSAVTSRLPGQPVRIVFER 394
BLAST of NO17G01810 vs. NCBI_GenBank
Match: OEU22487.1 (hypothetical protein FRACYDRAFT_232644 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 70.1 bits (170), Expect = 4.300e-8 Identity = 45/134 (33.58%), Postives = 77/134 (57.46%), Query Frame = 0 Query: 267 WTKTTLVGVESAINSRFRFSDDITFCVERSLAQDAGEDSIFSRPVEVFEVELERPVPLEFMQEDAEGGV-FVRRVLKSDSPALQLIQPFDRVIAVSASLGDRMWRTNSLDGVLSALCTRI-GSKVRLQFERSPE 399 W K+TL GV+SA+ SR ++ I F +R A+ ++ +E+ L RP+ L ++E +G V V K+ ++ DRV+AV +SLGDRMW ++++GV+S++ R+ G ++ +FERS + Sbjct: 295 WPKSTLDGVKSAVLSRKAVAESIQFEFQRLDAETVVDNQ--------YELTLARPIGLN-LKETEDGYVEIVGFTPKASKLVRYAVKVGDRVLAVDSSLGDRMWPVSTVEGVISSVTARLPGQQITFRFERSSD 419 The following BLAST results are available for this feature:
BLAST of NO17G01810 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 7
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO17G01810 ID=NO17G01810|Name=NO17G01810|organism=Nannochloropsis oceanica|type=gene|length=3731bpback to top protein sequence of NO17G01810.1 >NO17G01810.1-protein ID=NO17G01810.1-protein|Name=NO17G01810.1|organism=Nannochloropsis oceanica|type=polypeptide|length=973bpback to top Synonyms
Publications
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