NO16G02940, NO16G02940 (gene) Nannochloropsis oceanica

Overview
NameNO16G02940
Unique NameNO16G02940
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length4822
Alignment locationchr16:855412..860233 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:855412..860233 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0000160phosphorelay signal transduction system
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0000981DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0008270zinc ion binding
Vocabulary: INTERPRO
TermDefinition
IPR036864Zn2-C6_fun-type_DNA-bd_sf
IPR011006CheY-like_superfamily
IPR001789Sig_transdc_resp-reg_receiver
IPR001138Zn2-C6_fun-type_DNA-bd
Homology
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BLAST of NO16G02940 vs. NCBI_GenBank
Match: EWM23812.1 (hypothetical protein Naga_100603g3, partial [Nannochloropsis gaditana])

HSP 1 Score: 93.2 bits (230), Expect = 6.200e-15
Identity = 65/165 (39.39%), Postives = 84/165 (50.91%), Query Frame = 0 
Query:  413 LRLLLVIKDAKRALRLSHAAQETDDKDGFRVEVVRSALQALSRLSVQHYDVVIMEADFPMVDGVAAVRRLRRFEGWLESLRRSDAALPPALGVKQEEG--EASAKPPSFVVLVENAVDRRSDGSEGGREGGQGVH---------SFERRAWRAGADLVVRNFEDV 567
            LRLLLV++D  +AL L  AAQ       F V+V RS L  L RLS+QH+DVV+ME++  ++ G+ AVRRLR  EG LE L+R   A+ P L  + +EG  E                    D      EG               FE RA++AGAD+VV   EDV
Sbjct:  281 LRLLLVVRDVHQALALERAAQGGGKGVRFHVDVARSVLAGLYRLSLQHFDVVVMESEGSLMGGLEAVRRLRALEGRLEGLKRMH-AVRPVLRTRTKEGGREGXXXXXXXXXXXXXXXXXXKDWKRXXXEGXXXXXXXXXXXXXVGFEERAYQAGADMVVMKLEDV 444
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BLAST of NO16G02940 vs. NCBI_GenBank
Match: XP_005854022.1 (hypothetical protein NGA_0433200, partial [Nannochloropsis gaditana CCMP526] >EKU22340.1 hypothetical protein NGA_0433200, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 84.0 bits (206), Expect = 3.700e-12
Identity = 48/98 (48.98%), Postives = 64/98 (65.31%), Query Frame = 0 
Query:  413 LRLLLVIKDAKRALRLSHAAQETDDKDGFRVEVVRSALQALSRLSVQHYDVVIMEADFPMVDGVAAVRRLRRFEGWLESLRRSDAALPPALGVKQEEG 511
            LRLLLV++D  +AL L  AAQ       F V+V RS L  L RLS+QH+DVV+ME++  ++ G+ AVRRLR  EG LE L+R   A+ P L  + +EG
Sbjct:  281 LRLLLVVRDVHQALALERAAQGGGKGVRFHVDVARSVLAGLYRLSLQHFDVVVMESEGSLMGGLEAVRRLRALEGRLEGLKRMH-AVRPVLRTRTKEG 377
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BLAST of NO16G02940 vs. NCBI_GenBank
Match: XP_005854020.1 (hypothetical protein NGA_0433000, partial [Nannochloropsis gaditana CCMP526] >EKU22338.1 hypothetical protein NGA_0433000, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 77.8 bits (190), Expect = 2.700e-10
Identity = 33/60 (55.00%), Postives = 42/60 (70.00%), Query Frame = 0 
Query:  911 KARRACAYCHNKKVSCTCTRPCRRCVDMNIECVEYEPRPRNASWNRRKRAGSMASVDSEG 971
            +ARRACAYCH KK+SCTCTRPCRRC D+N+ C +Y PRPR+   ++  R+     V   G
Sbjct:  176 RARRACAYCHTKKISCTCTRPCRRCQDLNLVCSDYVPRPRHLGRSKGSRSPPQPRVGRTG 235
[Close]
BLAST of NO16G02940 vs. NCBI_GenBank
Match: EWM23815.1 (Zn(2)-C6 fungal-type DNA-binding domain protein, partial [Nannochloropsis gaditana])

HSP 1 Score: 77.8 bits (190), Expect = 2.700e-10
Identity = 33/60 (55.00%), Postives = 42/60 (70.00%), Query Frame = 0 
Query:  911 KARRACAYCHNKKVSCTCTRPCRRCVDMNIECVEYEPRPRNASWNRRKRAGSMASVDSEG 971
            +ARRACAYCH KK+SCTCTRPCRRC D+N+ C +Y PRPR+   ++  R+     V   G
Sbjct:  175 RARRACAYCHTKKISCTCTRPCRRCQDLNLVCSDYVPRPRHLGRSKGSRSPPQPRVGRTG 234
The following BLAST results are available for this feature:
BLAST of NO16G02940 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 4
Match NameE-valueIdentityDescription
EWM23812.16.200e-1539.39hypothetical protein Naga_100603g3, partial [Nanno... [more]
XP_005854022.13.700e-1248.98hypothetical protein NGA_0433200, partial [Nannoch... [more]
XP_005854020.12.700e-1055.00hypothetical protein NGA_0433000, partial [Nannoch... [more]
EWM23815.12.700e-1055.00Zn(2)-C6 fungal-type DNA-binding domain protein, p... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR018ncniR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR034ngnoR034Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR032ngnoR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO16G02940.1NO16G02940.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_101102g3gene6646Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO16G02940.1NO16G02940.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO16G02940 ID=NO16G02940|Name=NO16G02940|organism=Nannochloropsis oceanica|type=gene|length=4822bp
ATGATACAAGCCTCCAACATAGgttagtttgagtgtggacaagggatggg
gtttttatttggagcgtctactttcgtgcttgctggcagtgcgcaagtat
ccccgtcgattctgtcattttgggagtctagaaacgcaatgcaacactcg
cttctttctctcacaagacgcatgtatagaatcatttacggcatgtacag
gtacagatagtagaggacgaaagcaggcttggttaaaaacggacaagaat
tcacaaagagagtgttatgtatgtctcacgccctagcatagacacgtgtg
tctccctttcccaccattcgatctttttactcatacttcacactattctc
ccccgccccactccttgcacattattcagaggaatagtacgcctttttac
ggtggccagagcagatctccgcatcttgcctcattcctccctccctctct
ccctccctcccttatcaccccgcagAAGCTAGCAAGGGCACCCATACACA
AGCTTTCCCCCTTCCTTCTGCCCCAGTTGTCCCTGGTGATGTCTGCGCCC
ATTCTCCCACTGCTTGCTCCTCCTCGTCCTCAACTTCTCATCCCCATGAG
AAGTTTCACGACCTTgtaagatgggagggcaccctcgcccatctaccacc
acccttcacctcctccttctcctcctcctcttctccctcctctcctcccg
cttcacaacagCAGCAACAGCAGAACTTCACAGCATTAATTGCTTACCAA
ATTACAAGGCGTGTGTGTCTGGCTTTGCAGGTCATTGGGGGTGTAGGGCA
GGAAGGGCGAGTAGCAAGGAGAGGAAGCGAGGGACGCGAAGTAGCAGCAG
CAGCAACAATAAAAGGAGGAAGCATAGCAGATGACGTGATAGCTGATGAA
GTGGCCCTCATCAAGCATACTGTGGGTCTACAGCTGAAAGAGGCGCAGCA
TGACCTCGCCGTGTTTGAAGCCAGTTCTTCGCCCCTCCATGCCTCCCTCC
CTTCCTCGTCCTTGTCCTCGTCCTCCCCCCCCGCCTCGGACGCCACCTCT
GCGGCACTTGCAAAGACATTAGGCCGCCTTGACCTCCTTCTTAGCCAGCT
TGAGAGGCTGGGAAGAGAAGGGGGAGGGAAGGAGGGAGGGACTGATTCAA
CGACCCGCTGCGGCAGCAGCAGCAATAACAACAACGTCGACGGCAGCAGC
AGCAATGGCAACAATGGCAGCAGTAGCATAAGAAGGGAGGCACCGCCAGT
CTCTTCAGGTCGCTCCTTCTCCCCCACGGCCTCCTCGCCGGTTGAAAAAG
GTATGGCGGAAGGGAAGGAGGAAGGGAAGGAGGAGAAAACCCTCGATGAG
GGTTGCGAAACGTCTTCGCCGGCGACGACAACAGACACAACGAGCAGCGC
CGTCTTCAGTAGTGGAAGAAGAGGGCCGAGACAAGGACAGGGAGAAGTGA
TGGATCACGACCCCTACTGTCTCCACCTCCCGTGCGGGGCCGTCTTGCCC
GCTTCCAAAACAGCCACAGCAACAGCAACAGCAGCAGTAGTAACAGCAGC
AGTGGTAACAGCAGCAACAGCAGCAACAGCAGCAGCTGCAGTAGCCTCTA
CTTCTCCGGTCTCCTCTCTCTCCTCTTCCTCTTTTCGCCCGTCGTCTTTT
TCCTCCTCCTCGTCCTCCTCCTCCTCCTCTCGTTCATCCTCTTCCTCTTA
TTCCTCCTCTCGTCCCTCCTCCTCTTCTTCCATTTCCTCCATTTCCTCCT
CCTCTTCCTCCTCTTCCTCCTCCCCCCCCTTCCCCCTTCGCCTCCTCCTT
GTCATCAAGGATGCCAAAAGAGCCCTCCGCCTCTCCCACGCTGCACAAGA
AACGGATGACAAGGATGGGTTTAGGGTTGAGGTGGTGCGGTCCGCCCTTC
AAGCCCTGAGTCGTTTAAGTGTCCAGCATTACGACGTTGTGATCATGGAG
GCGGATTTCCCGATGGTTGATGGCGTGGCCGCCGTACGGAGGCTGAGGAG
GTTTGAAGGGTGGCTGGAAAGCCTAAGGAGATCAGATGCCGCCCTCCCTC
CCGCCCTGGGAGTCAAGCAGGAGGAGGGAGAGGCGTCCGCGAAGCCTCCG
TCGTTCGTGGTGCTGGTTGAGAATGCGGTTGATCGCAGATCTGATGGGAG
CGAAGGAGGGAGGGAAGGGGGGCAGGGTGTGCATAGCTTTGAGAGGAGAG
CGTGGAGGGCAGGGGCTGATCTGGTGGTCAGAAATTTTGAAGACGTGTGC
TTGACAAACATTAGGTCGATCGTTGTGAATGCAGCAGCAGCAGCTGCAGC
AGCAAGAGATAAGAGGGAGGAGAAAAAGGAGAGGGAGGAAGAGAAAGTAC
AGGCAGAGACAGGATTGAGGATGGATAGAAACGGTGCAGTGGTGATTGGG
ATGAGGGTAACAGAGACGATGATAAGGGGGAGGGAAGCAGAGGAGGAGGT
GCAGCAGCAACAGCAGGAGGATCAGAAAACGAAGGAAGAAGAAAGGAGGG
AGAATAAGTCTGAGGGAGACATGAAGGAGGAGGATTTGCTGGAGTGGGAG
GGGAGGAGGTATGGAGGGGAGGGAGGGAGAGAGGGACCTTCAATGGCGCT
GACTGTTACAGCCCTCGGAGATTTAGAAACGCAGGCATCGGAAACGTGTC
GGTTAGAAAATGGCATCAACACCATCATCCCGGGTAGCAGCAGCAGCAAC
TATTGCCAACGGCAGCAGCAAAAACAGCAGGAGCAGCAGGAGCAAGAGCA
AGAGCAGGAGCAGCAGCAGATTAATCTCCCTACTGCTCCTGCTGTTGCTA
CTGCCACAGCCATGGCTGCAGGACCTACTTCCTCCTTTCCCACTGTGCCG
TCCAACTTGCCCATCGCTTCAGGCGCAGCAACATTGACAGGGGGAGTGTA
TGGGGGAGGAGGAGGACCCGCATGGTCCTTAGAAGGTGGTATCGCACGGT
CCGTATCCTCTCTCACTTTCTCCACTGCTAGCGGCATCAACAGCAGCAGC
AGCAGCAGCAGCAGCAGGGGGGGAGGAAAGGACGGCACCTCGCTCTACTC
TTTCATCCCTCCTTCCGTTTTCTCGACTGCGGCCTTGGGAACAGGTGGAG
GGAGAGGAGGAGgtgcgaagagagggagggagggaggggggcttcggatg
gaggagctccagagcatggatcttgacaacactttggggaacatcaacaa
cgacaccgtcaaacgcccttccgctcttcccccttcctccttccccaccc
ttccttaccttcccccacactggcccactaaactgggcacccgcaccctc
ctccccttctccccctcctctcctcatcctccttcacaaactcctcctcc
acctcctccatctcctcccgctcagCCTTGGCAAGGAAAAGGACATTCAT
CAAAAGAGAGGAAGAGGAGCAGCAGGAGCAACAGGAGCAGCAGCAACATC
CAAAATTCTCTCCCCCTCGTCACTCCTCCTCCTTTTCCACTGTCCCCTCC
TCCGCCTCCTTCTCCTCCTCCTCCCATTCCATCATCCTCAACAAGGCACG
CCGAGCCTGCGCGTACTGTCACAACAAGAAGGTCAGCTGTACTTGCACTC
GACCCTGCCGTCGTTGCGTAGATATGAACATCGAATGCGTCGAATACGAG
CCACGACCGCGGAACGCATCTTGGAACAGACGAAAGCGGGCAGGGAGTAT
GGCCAGCGTCGACTCAGAGGGAGTGAAAAGCATTAAATTTCCAGGATCTC
CGACGGGACGACACCCGCAGAGCAGGCAGAAGCCAGGGGAAAAATCCGCC
AAAACCAACAACGGAGTATCACCGTCGTCACCCACAGCGGCAGCAGCGGC
AGCAGCGACAGCAGCAGCGAGAGCAGTAGAAACCCAACAGTATTCCTCGG
CCCCAGCCTGCTCCTCTTCACCCGATATGAAGGCAGCGATGGACAGGATC
CCTTCCTCCTCCTCCTCCTCCTCCTTGgtttcctttctgtcctccttctt
cccggctgatgactccttgccacccaccgccaccgccccgtcctgctcct
cccccctacccctcccgggcttgtctccaccccagcctctgtgggcaagg
gactgctaaaagcaggagggaagacaggaaggaagaaacgtagtgttttt
gaggcagctgcaacttgtacagagaaagcctggaagaagcaacattttca
ccaaaacccccagGAGAATGACGAGGAAAGGCAGCAGCAGCAACAGCACC
ACCACCACCAGCATCGACAACAACAGCCGCAGGAGAAAGTCTCTTCTCCC
TATCATCACGCCACCGCCGCCTCTTCTGCAGTCACAAGACCCCAAGCAGC
AGCAGCAGCAGCTACACCAGGTCTGACTGCCTCTCTACTTTCCTCTCGCA
CCCTCCTCCCCTCCGGAGCAGTCGAAGGACGAGGGGGAGGACTGAGTTTT
GATTGTCCTCCCTCCTACCGTCCCTCCGTCTCAGTCGCCCTTCGCCAGCA
GCAGGAGAAGGTTGTAAGGTTGATGAGGGAGGCGGGAAGGGAGGGAGGGA
GGGAGGGAGGAGTGGGAGGGACCGGGCCGAGGTTTCCCATGCCTGCTCAT
TTGCAGCAGTCTATCACCTCCATGGACCCAGCAGTGCTCAGGATGTGTGA
AGGAGGAAGAGGGGGAGGGAGGGAGGGGGGGAAGGACGGTGGTGGCGAAG
ACGCAGAAGAAAGAGCCGGAGCAGGTGGTTTGGAGGTGGGGGGGGAGGGG
GGCAGGGAAGGGGAGGGGGAAGGGGTTGCTTATCTATTGGGGGAGTATGA
TGTGAATCGGTTCTTTGTGTGA
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protein sequence of NO16G02940.1

>NO16G02940.1-protein ID=NO16G02940.1-protein|Name=NO16G02940.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1258bp
MIQASNIEASKGTHTQAFPLPSAPVVPGDVCAHSPTACSSSSSTSHPHEK
FHDLQQQQNFTALIAYQITRRVCLALQVIGGVGQEGRVARRGSEGREVAA
AATIKGGSIADDVIADEVALIKHTVGLQLKEAQHDLAVFEASSSPLHASL
PSSSLSSSSPPASDATSAALAKTLGRLDLLLSQLERLGREGGGKEGGTDS
TTRCGSSSNNNNVDGSSSNGNNGSSSIRREAPPVSSGRSFSPTASSPVEK
GMAEGKEEGKEEKTLDEGCETSSPATTTDTTSSAVFSSGRRGPRQGQGEV
MDHDPYCLHLPCGAVLPASKTATATATAAVVTAAVVTAATAATAAAAVAS
TSPVSSLSSSSFRPSSFSSSSSSSSSSRSSSSSYSSSRPSSSSSISSISS
SSSSSSSSPPFPLRLLLVIKDAKRALRLSHAAQETDDKDGFRVEVVRSAL
QALSRLSVQHYDVVIMEADFPMVDGVAAVRRLRRFEGWLESLRRSDAALP
PALGVKQEEGEASAKPPSFVVLVENAVDRRSDGSEGGREGGQGVHSFERR
AWRAGADLVVRNFEDVCLTNIRSIVVNAAAAAAAARDKREEKKEREEEKV
QAETGLRMDRNGAVVIGMRVTETMIRGREAEEEVQQQQQEDQKTKEEERR
ENKSEGDMKEEDLLEWEGRRYGGEGGREGPSMALTVTALGDLETQASETC
RLENGINTIIPGSSSSNYCQRQQQKQQEQQEQEQEQEQQQINLPTAPAVA
TATAMAAGPTSSFPTVPSNLPIASGAATLTGGVYGGGGGPAWSLEGGIAR
SVSSLTFSTASGINSSSSSSSSRGGGKDGTSLYSFIPPSVFSTAALGTGG
GRGGALARKRTFIKREEEEQQEQQEQQQHPKFSPPRHSSSFSTVPSSASF
SSSSHSIILNKARRACAYCHNKKVSCTCTRPCRRCVDMNIECVEYEPRPR
NASWNRRKRAGSMASVDSEGVKSIKFPGSPTGRHPQSRQKPGEKSAKTNN
GVSPSSPTAAAAAAATAAARAVETQQYSSAPACSSSPDMKAAMDRIPSSS
SSSSLENDEERQQQQQHHHHQHRQQQPQEKVSSPYHHATAASSAVTRPQA
AAAAATPGLTASLLSSRTLLPSGAVEGRGGGLSFDCPPSYRPSVSVALRQ
QQEKVVRLMREAGREGGREGGVGGTGPRFPMPAHLQQSITSMDPAVLRMC
EGGRGGGREGGKDGGGEDAEERAGAGGLEVGGEGGREGEGEGVAYLLGEY
DVNRFFV*
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Synonyms
Publications