Naga_100171g8, gene5874 (gene) Nannochloropsis gaditana

Overview
NameNaga_100171g8
Unique Namegene5874
Typegene
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:523957..526892 +

Link to JBrowse

Properties
Property NameValue
Locus tagNaga_100171g8
Gene biotypeprotein_coding
GbkeyGene
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:523957..526892 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
SRP2295572021-06-30
GO annotation for N. gaditana B312020-04-08
PRJNA1747702019-07-03
PXD0084992019-07-03
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0000166nucleotide binding
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ngnoL025ngnoL025Nannochloropsis gaditana (N. gaditana B-31)syntenic_region
ngnoL023ngnoL023Nannochloropsis gaditana (N. gaditana B-31)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G01730NO14G01730Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
rna6078rna6078-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide
rna6079rna6079-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
rna6078rna6078Nannochloropsis gaditana (N. gaditana B-31)mRNA
rna6079rna6079Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of rna6078

>rna6078-protein ID=rna6078-protein|Name=rna6078|organism=Nannochloropsis gaditana|type=polypeptide|length=575bp
MLRQVLRRAPSRALAMQMRGMAGGKDVRFGVDGRAQMLMGVDKLADAVQV
TLGPKGRNAIIDQPFGAPKITKDGVTVAKSIEFKERFVNMGAALVRQVAS
KTNDVAGDGTTTATVLTRAIFSEGCKAVAAGLNPMDLRRGTQLAVDHVVG
VLNQISRAVTSKAEVSQVGTISANGEKVIGDLLADAMERVGKEGVITVQD
GKTLHNELEVVEGMKFDRGYISPYFITDNKTQTAELENPYILLVEKKITS
IQSLIPLLEMVVKSQRPLLIIAEDVESEALATLVVNKLRAGIKVAAVKAP
GFGDNRKATLQDIAVLTGGQVISEDLGLKVENTTEDMLGTSKKVTVSKDD
TLILHGNGARDAIDERCLLLKDSIAATASDYEKEKLQERLAKLSGGVAVI
KVGGASEVEVNEKKDRVVDALNATRAAVEQGIVPGGGLALLWASKQLEDV
KAKVSNMDQRIGVEIIEKALIAPVKSIANNAGVEGAVVVGELMKKDKPEL
GYNAQTGEYVDMFEAGIIDPTKVVRTALVDAQSVAALMITTEAMVADLPK
DEGDAPAMPGMGGMGGMGGMGGMGF
back to top

protein sequence of rna6079

>rna6079-protein ID=rna6079-protein|Name=rna6079|organism=Nannochloropsis gaditana|type=polypeptide|length=574bp
MITSLLSSPLLRHGFLPLTSPGGKDVRFGVDGRAQMLMGVDKLADAVQVT
LGPKGRNAIIDQPFGAPKITKDGVTVAKSIEFKERFVNMGAALVRQVASK
TNDVAGDGTTTATVLTRAIFSEGCKAVAAGLNPMDLRRGTQLAVDHVVGV
LNQISRAVTSKAEVSQVGTISANGEKVIGDLLADAMERVGKEGVITVQDG
KTLHNELEVVEGMKFDRGYISPYFITDNKTQTAELENPYILLVEKKITSI
QSLIPLLEMVVKSQRPLLIIAEDVESEALATLVVNKLRAGIKVAAVKAPG
FGDNRKATLQDIAVLTGGQVISEDLGLKVENTTEDMLGTSKKVTVSKDDT
LILHGNGARDAIDERCLLLKDSIAATASDYEKEKLQERLAKLSGGVAVIK
VGGASEVEVNEKKDRVVDALNATRAAVEQGIVPGGGLALLWASKQLEDVK
AKVSNMDQRIGVEIIEKALIAPVKSIANNAGVEGAVVVGELMKKDKPELG
YNAQTGEYVDMFEAGIIDPTKVVRTALVDAQSVAALMITTEAMVADLPKD
EGDAPAMPGMGGMGGMGGMGGMGF
back to top
Synonyms
Publications