rna6079, rna6079 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6079
Unique Name	rna6079
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2609
Alignment location	CM002467.1:523958..526892 +

Link to JBrowse

Properties


Property Name	Value
Product	Chaperonin Cpn60/TCP-1
Orig transcript id	gnl\|cribi\|Naga_100171g8.2667.mrna
Orig protein id	gnl\|cribi\|Naga_100171g8.2667
Gbkey	mRNA
Note	encoded by transcript variant 2; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002467.1	supercontig	CM002467.1:523958..526892 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100171g8	gene5874	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6079	rna6079-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24609.1	cds6064	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002467.1:523958..526892+
coding sequence from alignment at CM002467.1:523958..526892+

mRNA sequence

>rna6079 ID=rna6079|Name=rna6079|organism=Nannochloropsis gaditana|type=mRNA|length=2609bp
GAGTCACTCTTCCGTTCACTTGCGAGTGCGCCATGCCCCCTGAACAATGA
CGTCAATACTGAATTCTTTGGCACTTTGCAATGAGCACGACTCCTGAAGT
ATGTAGGGTTACGGAGGCTCTTGTTGTCATTCTTGGACGAGAAGATACTT
CCGGTTCCAGGAAGCTTCCAAACCTGCCCCCCTCACTCCTTTGTTCTTTC
TCAAATCTCACGCCTTTGCATCCTGTATTTTCTTTGTACAATCCGCATGC
TCATCACGTGGACCGAAATGCTCCTTTTAAATCCTTTTGCAGTGAACACA
GATCATCATGCTTCGACAAGTCTTGCGTCGTGCTCCCAGCCGGGCACTTG
CGATGCAGATGCGTGGCATGGCAGGCGGGAAGGACGTTCGGTTTGGCGTG
GACGGCCGCGCGCAGATGCTCATGGGCGTTGACAAGCTGGCGGACGCCGT
ACAAGTGACGTTGGGACCAAAAGGCCGGAACGCCATCATCGACCAGCCGT
TCGGAGCCCCCAAGATCACCAAGGACGGCGTGACGGTGGCGAAGAGTATC
GAATTTAAGGAGCGTTTTGTCAACATGGGCGCCGCGCTCGTGCGGCAGGT
GGCGAGCAAGACCAACGATGTGGCCGGGGACGGGACCACCACCGCCACGG
TGTTGACGCGGGCCATCTTCTCGGAGGGTTGCAAGGCGGTGGCGGCCGGG
CTGAACCCGATGGACCTGAGGAGAGGCACGCAGCTCGCCGTCGACCACGT
GGTGGGCGTTTTGAACCAGATCTCCCGCGCCGTCACCTCCAAGGCGGAGG
TGTCCCAGGTGGGAACGATCTCGGCGAACGGGGAGAAAGTAATTGGAGAC
CTGCTGGCGGACGCGATGGAGCGGGTGGGCAAGGAGGGCGTGATCACCGT
CCAGGACGGAAAGACGCTTCACAACGAGCTGGAGGTGGTGGAGGGGATGA
AATTCGACCGGGGCTACATCTCCCCCTATTTCATCACCGACAACAAGACC
CAGACGGCGGAGCTTGAGAATCCCTACATCCTGCTGGTCGAGAAGAAGAT
CACCTCCATTCAGTCCCTCATCCCGCTCCTGGAGATGGTGGTGAAGAGCC
AGCGGCCCCTGCTCATCATCGCCGAAGACGTTGAGTCCGAGGCTCTGGCT
ACGCTGGTGGTCAACAAACTGCGGGCCGGGATCAAGGTAGCGGCCGTGAA
GGCTCCAGGCTTTGGAGACAACAGGAAGGCGACGCTCCAGGACATCGCGG
TGCTGACTGGGGGGCAGGTGATCAGTGAGGACCTGGGCCTGAAGGTGGAG
AATACCACGGAAGACATGCTGGGCACTTCCAAGAAGGTGACAGTCTCTAA
GGATGACACCCTCATTTTGCACGGAAACGGGGCCCGGGACGCCATCGACG
AGCGCTGCTTGCTGTTGAAGGACTCCATCGCCGCCACGGCCTCGGACTAC
GAGAAGGAGAAGCTACAGGAGCGCTTGGCGAAGCTGTCGGGGGGCGTGGC
GGTGATTAAGGTGGGCGGGGCCTCGGAGGTGGAGGTGAATGAGAAGAAGG
ACCGCGTGGTGGACGCTTTGAATGCGACGCGGGCGGCGGTGGAGCAGGGC
ATTGTCCCCGGGGGCGGGTTGGCCCTGTTGTGGGCTTCCAAGCAGCTGGA
GGACGTCAAGGCGAAGGTCTCGAACATGGACCAGCGCATCGGCGTCGAGA
TCATTGAGAAGGCGCTGATCGCACCCGTGAAATCCATCGCAAACAACGCC
GGTGTGGAAGGGGCGGTGGTAGTGGGGGAACTCATGAAGAAGGACAAACC
AGAGCTGGGGTACAACGCGCAGACAGGCGAGTACGTTGACATGTTCGAGG
CAGGGATTATCGACCCGACGAAGGTGGTGCGAACGGCGCTGGTAGACGCC
CAGTCGGTGGCGGCGTTGATGATTACGACGGAGGCCATGGTGGCGGACCT
TCCCAAAGACGAGGGGGACGCACCGGCGATGCCGGGGATGGGAGGTATGG
GAGGCATGGGTGGCATGGGTGGCATGGGCTTCTAGACGTCGGTGTGCACG
GAGGTTGCCTGGTGGGGAAGGAAGGGGAGATGGGGAGACGCGAAGGAGCG
GCAGTTGGGGGACTGGCCTGGGATACAGGTGTTGGATTGGAGAAGTGATG
GAAGAGCAAGTGCGGAACGGGGCGAGCATTGCCCAATATAGAGAAGCGAA
AGAAGGCGGGTGATAGCGAGATAGACATGTGGATGGGGAATGCAGCGATC
TTGCTGAGGATGAAAAGGAGTGGTTAATCAACCAGGCTTGATTTTGGTAA
ATTACCTGGGCTGTCCATTTTCGCCCGTCCTTTAGCTTCTGGCAATGTGT
GGGAAGGATAGCGGTTCCAAAACCTATAAACAAGTATATCCGGAAGTGCA
TCCAGTAATGTGGTCGCGTACGTCCAGAAATTGCAACTTAGTAATATCCA
TGCCGATTGATAAACCATTGGACATTCTCCGTCTCTCAAACATGACAAAA
GGTCCCCTCCTAGTATTCTTTTTTGCTATTTACATCTCGCACATCCTATC
TATGTAAGCCTTAACAGCAATCCTATCAATCATGATGTATCCATAAGCGC
CACCTTTCC

protein sequence of rna6079

>rna6079-protein ID=rna6079-protein|Name=rna6079|organism=Nannochloropsis gaditana|type=polypeptide|length=574bp
MITSLLSSPLLRHGFLPLTSPGGKDVRFGVDGRAQMLMGVDKLADAVQVT
LGPKGRNAIIDQPFGAPKITKDGVTVAKSIEFKERFVNMGAALVRQVASK
TNDVAGDGTTTATVLTRAIFSEGCKAVAAGLNPMDLRRGTQLAVDHVVGV
LNQISRAVTSKAEVSQVGTISANGEKVIGDLLADAMERVGKEGVITVQDG
KTLHNELEVVEGMKFDRGYISPYFITDNKTQTAELENPYILLVEKKITSI
QSLIPLLEMVVKSQRPLLIIAEDVESEALATLVVNKLRAGIKVAAVKAPG
FGDNRKATLQDIAVLTGGQVISEDLGLKVENTTEDMLGTSKKVTVSKDDT
LILHGNGARDAIDERCLLLKDSIAATASDYEKEKLQERLAKLSGGVAVIK
VGGASEVEVNEKKDRVVDALNATRAAVEQGIVPGGGLALLWASKQLEDVK
AKVSNMDQRIGVEIIEKALIAPVKSIANNAGVEGAVVVGELMKKDKPELG
YNAQTGEYVDMFEAGIIDPTKVVRTALVDAQSVAALMITTEAMVADLPKD
EGDAPAMPGMGGMGGMGGMGGMGF

mRNA from alignment at CM002467.1:523958..526892+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6079 ID=rna6079|Name=rna6079|organism=Nannochloropsis gaditana|type=mRNA|length=2935bp|location=Sequence derived from alignment at CM002467.1:523958..526892+ (Nannochloropsis gaditana)
AGTCACTCTTCCGTTCACTTGCGAGTGCGCCATGCCCCCTGAACAATGAC
GTCAATACTGAATTCTTTGGCACTTTGCAATGAGCACGACTCCTGAAGTA
TGTAGGGTTACGGAGGCTCTTGTTGTCATTCTTGGACGAGAAGATACTTC
CGGTTCCAGGAAGCTTCCAAACCTGCCCCCCTCACTCCTTTGTTCTTTCT
CAAATCTCACGCCTTTGCATCCTGTATTTTCTTTGTACAATCCGCATGCT
CATCACGTGGACCGAAATGCTCCTTTTAAATCCTTTTGCAGTGAACACAG
ATCATCATGCTTCGACAAGTCTTGCGTCGTGCTCCCAGCCGGGCACTTGC
GATGCAGATGCGTGGCATGGCAGGTAAGCACTACAGATCCTCAGTGGAAC
ATTTATAAGGATAAGGAAGGCAATATGACTATTGTGAGGGTGATATTAGC
TGCATGGTGAATTGAAACGCTGCCGGCAGACGACTTTGGGGATGAGAGTG
AAGTGAGTGCTCGTACACCTCCTGGGAGAATGTTCGTGGCCACGGGAATC
AGTCAGGTCATCACCTTAAATTTAAAGCTCGTGTCGTTTTTATGAGCCAT
GGAATCTTTGGCACGCCACTTTATTGACAAACTTCTATGATCAcgtccct
tctctcctcacCTCTTCTGCGCCACGGTTTCTTGCCCCTAACCTCcccag
gcgggaaggacgtTCGGTTTGGCGTGGACGGCCGCGCGCAGATGCTCATG
GGCGTTGACAAGCTGGCGGACGCCGTACAAGTGACGTTGGGACCAAAAGG
CCGGAACGCCATCATCGACCAGCCGTTCGGAGCCCCCAAGATCACCAAGG
ACGGCGTGACGGTGGCGAAGAGTATCGAATTTAAGGAGCGTTTTGTCAAC
ATGGGCGCCGCGCTCGTGCGGCAGGTGGCGAGCAAGACCAACGATGTGGC
CGGGGACGggaccaccaccgccacggtGTTGACGCGGGCCATCTTCTCGG
AGGGTtgcaaggcggtggcggccggGCTGAACCCGATGGACCTGAGGAGA
GGCACGCAGCTCGCCGTCGACCACGTGGTGGGCGTTTTGAACCAGATCTC
CCGCGCCGTCACCTCCAAGGCGGAGGTGTCCCAGGTGGGAACGATCTCGG
CGAACGGGGAGAAAGTAATTGGAGACCTGCTGGCGGACGCGATGGAGCgg
gtgggcaaggagggcgtgatCACCGTCCAGGACGGAAAGACGCTTCACAA
cgagctggaggtggtggaggggatgaaaTTCGACCGGGGCTACATCTCCC
CCTATTTCATCACCGACAACAAGACCCAGACGGCGGAGCTTGAGAATCCC
TACATCCTGCTGGTCGAGAAGAAGATCACCTCCATTCAGTCCCTCATCCC
GCTCCTGGAGATGGTGGTGAAGAGCCAGCGGCCCCTGCTCATCATCGCCG
AAGACGTTGAGTCCGAGGCTCTGGCTACGCTGGTGGTCAACAAACTGCGG
GCCGGGATCAAGGTAGCGGCCGTGAAGGCTCCAGGCTTTGGAGACAACAG
GAAGGCGACGCTCCAGGACATCGCGGTGCTGACTGGGGGGCAGGTGATCA
GTGAGGACCTGGGCCTGAAGGTGGAGAATACCACGGAAGACATGCTGGGC
ACTTCCAAGAAGGTGACAGTCTCTAAGGATGACACCCTCATTTTGCACGG
AAACGGGGCCCGGGACGCCATCGACGAGCGCTGCTTGCTGTTGAAGgact
ccatcgccgccacggcctcggactacgagaaggagaagctaCAGGAGCGC
TTGGCGAAGCTGTCGGGGGGCGTGGCGGTGATTAAGGTGGGCGGGGcctc
ggaggtggaggtgaatGAGAAGAAGGACCGCGTGGTGGACGCTTTGAATG
CGACgcgggcggcggtggagcagGGCATTGTCCCCGGGGGCGGGTTGGCC
CTGTTGTGGGCTTCCAAGCAGCTGGAGGACGTCAAGGCGAAGGTCTCGAA
CATGGACCAGCGCATCGGCGTCGAGATCATTGAGAAGGCGCTGATCGCAC
CCGTGAAATCCATCGCAAACAACGCCGGTGTGGAAGGGGCGGTGGTAGTG
GGGGAACTCATGAAGAAGGACAAACCAGAGCTGGGGTACAACGCGCAGAC
AGGCGAGTACGTTGACATGTTCGAGGCAGGGATTATCGACCCGACGAAGG
TGGTGCGAACGGCGCTGGTAGACGCCCAGTCGGTGGCGGCGTTGATGATT
ACGACGGAGGCCATGGTGGCGGACCTTCCCaaagacgagggggacgcACC
GGCGATGCCGGGGATGGGAGGTATGGGAGGCATGGGTGGCATGGGTGGCA
TGGGCTTCTAGACGTCGGTGTGCACGGAGGTTGcctggtggggaaggaag
gggagatggggagaCGCGAAGGAGCGGCAGTTGGGGGACTGGCCTGGGAT
ACAGGTGTTGGATTGGAGAAGTGATGGAAGAGCAAGTGCGGAACGGGGCG
AGCATTGCCCAATATAGAGAAGCGAAAGAAGGCGGGTGATAGCGAGATAG
ACATGTGGATGGGGAATGCAGCGATCTTGCtgaggatgaaaaggagtGGT
TAATCAACCAGGCTTGATTTTGGTAAATTACCTGGGCTGTCCATTTTCGC
CCGTCCTTTAGCTTCTGGCAATGTGTGGGAAGGATAGCGGTTCCAAAACC
TATAAACAAGTATATCCGGAAGTGCATCCAGTAATGTGGTCGCGTACGTC
CAGAAATTGCAACTTAGTAATATCCATGCCGATTGATAAACCATTGGACA
TTCTCCGTCTCTCAAACATGACAAAAGGTCCCCTCCTAGTATTCTTTTTT
GCTATTTACATCTCGCACATCCTATCTATGTAAGCCTTAACAGCAATCCT
ATCAATCATGATGTATCCATAAGCGCCACCTTTCC

Coding sequence (CDS) from alignment at CM002467.1:523958..526892+

>rna6079 ID=rna6079|Name=rna6079|organism=Nannochloropsis gaditana|type=CDS|length=1725bp|location=Sequence derived from alignment at CM002467.1:523958..526892+ (Nannochloropsis gaditana)
ATGATCAcgtcccttctctcctcacCTCTTCTGCGCCACGGTTTCTTGCC
CCTAACCTCcccaggcgggaaggacgtTCGGTTTGGCGTGGACGGCCGCG
CGCAGATGCTCATGGGCGTTGACAAGCTGGCGGACGCCGTACAAGTGACG
TTGGGACCAAAAGGCCGGAACGCCATCATCGACCAGCCGTTCGGAGCCCC
CAAGATCACCAAGGACGGCGTGACGGTGGCGAAGAGTATCGAATTTAAGG
AGCGTTTTGTCAACATGGGCGCCGCGCTCGTGCGGCAGGTGGCGAGCAAG
ACCAACGATGTGGCCGGGGACGggaccaccaccgccacggtGTTGACGCG
GGCCATCTTCTCGGAGGGTtgcaaggcggtggcggccggGCTGAACCCGA
TGGACCTGAGGAGAGGCACGCAGCTCGCCGTCGACCACGTGGTGGGCGTT
TTGAACCAGATCTCCCGCGCCGTCACCTCCAAGGCGGAGGTGTCCCAGGT
GGGAACGATCTCGGCGAACGGGGAGAAAGTAATTGGAGACCTGCTGGCGG
ACGCGATGGAGCgggtgggcaaggagggcgtgatCACCGTCCAGGACGGA
AAGACGCTTCACAAcgagctggaggtggtggaggggatgaaaTTCGACCG
GGGCTACATCTCCCCCTATTTCATCACCGACAACAAGACCCAGACGGCGG
AGCTTGAGAATCCCTACATCCTGCTGGTCGAGAAGAAGATCACCTCCATT
CAGTCCCTCATCCCGCTCCTGGAGATGGTGGTGAAGAGCCAGCGGCCCCT
GCTCATCATCGCCGAAGACGTTGAGTCCGAGGCTCTGGCTACGCTGGTGG
TCAACAAACTGCGGGCCGGGATCAAGGTAGCGGCCGTGAAGGCTCCAGGC
TTTGGAGACAACAGGAAGGCGACGCTCCAGGACATCGCGGTGCTGACTGG
GGGGCAGGTGATCAGTGAGGACCTGGGCCTGAAGGTGGAGAATACCACGG
AAGACATGCTGGGCACTTCCAAGAAGGTGACAGTCTCTAAGGATGACACC
CTCATTTTGCACGGAAACGGGGCCCGGGACGCCATCGACGAGCGCTGCTT
GCTGTTGAAGgactccatcgccgccacggcctcggactacgagaaggaga
agctaCAGGAGCGCTTGGCGAAGCTGTCGGGGGGCGTGGCGGTGATTAAG
GTGGGCGGGGcctcggaggtggaggtgaatGAGAAGAAGGACCGCGTGGT
GGACGCTTTGAATGCGACgcgggcggcggtggagcagGGCATTGTCCCCG
GGGGCGGGTTGGCCCTGTTGTGGGCTTCCAAGCAGCTGGAGGACGTCAAG
GCGAAGGTCTCGAACATGGACCAGCGCATCGGCGTCGAGATCATTGAGAA
GGCGCTGATCGCACCCGTGAAATCCATCGCAAACAACGCCGGTGTGGAAG
GGGCGGTGGTAGTGGGGGAACTCATGAAGAAGGACAAACCAGAGCTGGGG
TACAACGCGCAGACAGGCGAGTACGTTGACATGTTCGAGGCAGGGATTAT
CGACCCGACGAAGGTGGTGCGAACGGCGCTGGTAGACGCCCAGTCGGTGG
CGGCGTTGATGATTACGACGGAGGCCATGGTGGCGGACCTTCCCaaagac
gagggggacgcACCGGCGATGCCGGGGATGGGAGGTATGGGAGGCATGGG
TGGCATGGGTGGCATGGGCTTCTAG

Synonyms

Publications