NO14G01730, NO14G01730 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO14G01730
Unique Name	NO14G01730
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2737
Alignment location	chr14:532661..535397 -

Link to JBrowse

Properties


Property Name	Value
Description	Chaperonin Cpn60/TCP-1

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr14	genome	chr14:532661..535397 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
PRJNA769958	2024-08-13
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
PXD016054	2021-01-14
PXD016699	2021-01-08
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
PXD010030	2020-03-16
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
GO annotation for IMET1v2 genes	2019-07-10
PXD008721	2019-04-30
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005524	ATP binding
GO:0000166	nucleotide binding

Vocabulary: **Biological Process**
Term	Definition
GO:0042026	protein refolding
GO:0009987	cellular process

Vocabulary: **Cellular Component**
Term	Definition
GO:0005737	cytoplasm
GO:0005737	cytoplasm

Vocabulary: **INTERPRO**
Term	Definition
IPR027409	GroEL-like_apical_dom
IPR027410	TCP-1-like_intermed
IPR027413	GROEL-like_equatorial
IPR002423	Cpn60/TCP-1
IPR001844	Chaprnin_Cpn60

Homology

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BLAST of NO14G01730 vs. NCBI_GenBank
Match: EWM24608.1 (Chaperonin Cpn60/TCP-1 [Nannochloropsis gaditana])

HSP 1 Score: 793.9 bits (2049), Expect = 2.600e-226
Identity = 421/437 (96.34%), Postives = 429/437 (98.17%), Query Frame = 0

Query:    1 MLRQILRRAPTRALTVQMRGMAGGKDVRFGVEGRAQMLMGVDKLADAVQVTLGPKGRNAIIDQPFGAPKITKDGVTVAKSIEFKERFVNMGAALVRQVASKTNDIAGDGTTTATVLTRAIFSEGCKAVAAGLNPMDLRRGTQLAVDHVVKVLNDISRAVTSKAEVSQVGTISANGEKAIGDLLADAMERVGKEGVITVQDGKTLHNELEVVEGMKFDRGYISPYFITDNKTQAAELENPYILLVEKKIASIQSLIPLLEMVVKTQRPLLIIAEDVESEALATLVVNKLRAGIKVAAVKAPGFGDNRKATLQDIAVLTGGQVISEDLGLKVENVTEDMLGTSKKVTVSKDDTLILHGNGAREAIDERCVLLKDSIAATASDYEKEKLQERLAKLSGGVAVIKVGGGSEVEVNEKKDRVVDALNATRAAVEQGIVPGGG 438
            MLRQ+LRRAP+RAL +QMRGMAGGKDVRFGV+GRAQMLMGVDKLADAVQVTLGPKGRNAIIDQPFGAPKITKDGVTVAKSIEFKERFVNMGAALVRQVASKTND+AGDGTTTATVLTRAIFSEGCKAVAAGLNPMDLRRGTQLAVDHVV VLN ISRAVTSKAEVSQVGTISANGEK IGDLLADAMERVGKEGVITVQDGKTLHNELEVVEGMKFDRGYISPYFITDNKTQ AELENPYILLVEKKI SIQSLIPLLEMVVK+QRPLLIIAEDVESEALATLVVNKLRAGIKVAAVKAPGFGDNRKATLQDIAVLTGGQVISEDLGLKVEN TEDMLGTSKKVTVSKDDTLILHGNGAR+AIDERC+LLKDSIAATASDYEKEKLQERLAKLSGGVAVIKVGG SEVEVNEKKDRVVDALNATRAAVEQGIVPGGG
Sbjct:    1 MLRQVLRRAPSRALAMQMRGMAGGKDVRFGVDGRAQMLMGVDKLADAVQVTLGPKGRNAIIDQPFGAPKITKDGVTVAKSIEFKERFVNMGAALVRQVASKTNDVAGDGTTTATVLTRAIFSEGCKAVAAGLNPMDLRRGTQLAVDHVVGVLNQISRAVTSKAEVSQVGTISANGEKVIGDLLADAMERVGKEGVITVQDGKTLHNELEVVEGMKFDRGYISPYFITDNKTQTAELENPYILLVEKKITSIQSLIPLLEMVVKSQRPLLIIAEDVESEALATLVVNKLRAGIKVAAVKAPGFGDNRKATLQDIAVLTGGQVISEDLGLKVENTTEDMLGTSKKVTVSKDDTLILHGNGARDAIDERCLLLKDSIAATASDYEKEKLQERLAKLSGGVAVIKVGGASEVEVNEKKDRVVDALNATRAAVEQGIVPGGG 437

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BLAST of NO14G01730 vs. NCBI_GenBank
Match: EWM24609.1 (Chaperonin Cpn60/TCP-1 [Nannochloropsis gaditana])

HSP 1 Score: 760.4 bits (1962), Expect = 3.200e-216
Identity = 403/415 (97.11%), Postives = 408/415 (98.31%), Query Frame = 0

Query:   23 GGKDVRFGVEGRAQMLMGVDKLADAVQVTLGPKGRNAIIDQPFGAPKITKDGVTVAKSIEFKERFVNMGAALVRQVASKTNDIAGDGTTTATVLTRAIFSEGCKAVAAGLNPMDLRRGTQLAVDHVVKVLNDISRAVTSKAEVSQVGTISANGEKAIGDLLADAMERVGKEGVITVQDGKTLHNELEVVEGMKFDRGYISPYFITDNKTQAAELENPYILLVEKKIASIQSLIPLLEMVVKTQRPLLIIAEDVESEALATLVVNKLRAGIKVAAVKAPGFGDNRKATLQDIAVLTGGQVISEDLGLKVENVTEDMLGTSKKVTVSKDDTLILHGNGAREAIDERCVLLKDSIAATASDYEKEKLQERLAKLSGGVAVIKVGGGSEVEVNEKKDRVVDALNATRAAVEQGIVPGGG 438
            GGKDVRFGV+GRAQMLMGVDKLADAVQVTLGPKGRNAIIDQPFGAPKITKDGVTVAKSIEFKERFVNMGAALVRQVASKTND+AGDGTTTATVLTRAIFSEGCKAVAAGLNPMDLRRGTQLAVDHVV VLN ISRAVTSKAEVSQVGTISANGEK IGDLLADAMERVGKEGVITVQDGKTLHNELEVVEGMKFDRGYISPYFITDNKTQ AELENPYILLVEKKI SIQSLIPLLEMVVK+QRPLLIIAEDVESEALATLVVNKLRAGIKVAAVKAPGFGDNRKATLQDIAVLTGGQVISEDLGLKVEN TEDMLGTSKKVTVSKDDTLILHGNGAR+AIDERC+LLKDSIAATASDYEKEKLQERLAKLSGGVAVIKVGG SEVEVNEKKDRVVDALNATRAAVEQGIVPGGG
Sbjct:   22 GGKDVRFGVDGRAQMLMGVDKLADAVQVTLGPKGRNAIIDQPFGAPKITKDGVTVAKSIEFKERFVNMGAALVRQVASKTNDVAGDGTTTATVLTRAIFSEGCKAVAAGLNPMDLRRGTQLAVDHVVGVLNQISRAVTSKAEVSQVGTISANGEKVIGDLLADAMERVGKEGVITVQDGKTLHNELEVVEGMKFDRGYISPYFITDNKTQTAELENPYILLVEKKITSIQSLIPLLEMVVKSQRPLLIIAEDVESEALATLVVNKLRAGIKVAAVKAPGFGDNRKATLQDIAVLTGGQVISEDLGLKVENTTEDMLGTSKKVTVSKDDTLILHGNGARDAIDERCLLLKDSIAATASDYEKEKLQERLAKLSGGVAVIKVGGASEVEVNEKKDRVVDALNATRAAVEQGIVPGGG 436

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BLAST of NO14G01730 vs. NCBI_GenBank
Match: CBJ29791.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 631.3 bits (1627), Expect = 2.300e-177
Identity = 330/436 (75.69%), Postives = 377/436 (86.47%), Query Frame = 0

Query:    2 LRQILRRAPTRALTVQMRGMAGGKDVRFGVEGRAQMLMGVDKLADAVQVTLGPKGRNAIIDQPFGAPKITKDGVTVAKSIEFKERFVNMGAALVRQVASKTNDIAGDGTTTATVLTRAIFSEGCKAVAAGLNPMDLRRGTQLAVDHVVKVLNDISRAVTSKAEVSQVGTISANGEKAIGDLLADAMERVGKEGVITVQDGKTLHNELEVVEGMKFDRGYISPYFITDNKTQAAELENPYILLVEKKIASIQSLIPLLEMVVKTQRPLLIIAEDVESEALATLVVNKLRAGIKVAAVKAPGFGDNRKATLQDIAVLTGGQVISEDLGLKVENVTEDMLGTSKKVTVSKDDTLILHGNGAREAIDERCVLLKDSIAATASDYEKEKLQERLAKLSGGVAVIKVGGGSEVEVNEKKDRVVDALNATRAAVEQGIVPGGG 438
            LRQ    A  RA    +R +A GKDV+FGVEGRA ML GVD LADAVQVT+GPKGR+AI++Q +G P+ITKDGVTVAKSIEFK++F NMGA LVRQVASKTND AGDGTT+ATVLTRAIF EGCKAVAAG+NPMDLR+G +LA DHVV VL+DIS+ +++K EV+QVGTISAN E  IGDL+A AMERVG EGVITVQDGKTL NE+EVVEGMKFDRGYISPYF+TDNKTQ  E+ENP IL+VE+K+++I S+IPLLE  VK+QRPLLI+AEDV+SEALATLVVNKLRAGIKV AVKAPGFGDNRKATLQD+AVLTGGQVISE++GLK+E+ T D  GT K V VSKDD++IL G GAR+ I+ERC LL++SIA   SDYEKEKL+ERLAKL  GVAVIKVGG SEVEV EKKDR VDALNATRAAV +GIVPGGG
Sbjct:    3 LRQASALAARRATAGSVRRLATGKDVKFGVEGRALMLQGVDMLADAVQVTMGPKGRSAILEQTYGVPRITKDGVTVAKSIEFKDKFHNMGAQLVRQVASKTNDAAGDGTTSATVLTRAIFREGCKAVAAGMNPMDLRKGIKLATDHVVNVLSDISKPISTKEEVAQVGTISANSETEIGDLIASAMERVGNEGVITVQDGKTLDNEIEVVEGMKFDRGYISPYFVTDNKTQMCEMENPLILIVERKVSTISSIIPLLEATVKSQRPLLIVAEDVDSEALATLVVNKLRAGIKVCAVKAPGFGDNRKATLQDLAVLTGGQVISEEVGLKLEDATPDHCGTCKLVKVSKDDSIILDGAGARDGIEERCSLLRESIARVKSDYEKEKLEERLAKLHSGVAVIKVGGSSEVEVGEKKDRFVDALNATRAAVSEGIVPGGG 438

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BLAST of NO14G01730 vs. NCBI_GenBank
Match: XP_008862079.1 (chaperonin GroL [Aphanomyces invadans] >ETW08274.1 chaperonin GroL [Aphanomyces invadans])

HSP 1 Score: 629.0 bits (1621), Expect = 1.100e-176
Identity = 325/432 (75.23%), Postives = 378/432 (87.50%), Query Frame = 0

Query:    7 RRAPTR-ALTVQMRGMAGGKDVRFGVEGRAQMLMGVDKLADAVQVTLGPKGRNAIIDQPFGAPKITKDGVTVAKSIEFKERFVNMGAALVRQVASKTNDIAGDGTTTATVLTRAIFSEGCKAVAAGLNPMDLRRGTQLAVDHVVKVLNDISRAVTSKAEVSQVGTISANGEKAIGDLLADAMERVGKEGVITVQDGKTLHNELEVVEGMKFDRGYISPYFITDNKTQAAELENPYILLVEKKIASIQSLIPLLEMVVKTQRPLLIIAEDVESEALATLVVNKLRAGIKVAAVKAPGFGDNRKATLQDIAVLTGGQVISEDLGLKVENVTEDMLGTSKKVTVSKDDTLILHGNGAREAIDERCVLLKDSIAATASDYEKEKLQERLAKLSGGVAVIKVGGGSEVEVNEKKDRVVDALNATRAAVEQGIVPGGG 438
            ++ PT+ A T+  R  A GKD+RFGVEGRA ML G D+LADAVQVTLGPKGRN +IDQ +GAPKITKDGVTVAK+IEF+++F NMGA L+RQVA+ TND AGDGTT+ATVLTRAI+SEGCK+VAAG+NP DLRRG QLAVDHVV  L  +S+ +  K +V+QV TISAN EK IGDL++DAMERVG+EGVITVQDGKTL+NELEVVEGMKFDRGYISPYF+T++K QA ELENPYILLVEKK++S Q + P+LE V K QRPLLIIAEDVESEALA L++N++RAGIKV AVKAPGFGDNRKA LQD+AVLTG +VISED+GL+++N T D+LGT+KKVT++KDDTLIL G GA++AI ER  LLKDSIA + SDYEKEKLQERLAKL GG+AVIKVGG SEVEV EKKDRVVDALNATRAAVE+GIVPGGG
Sbjct:   23 KQVPTQMARTMSKRFFASGKDIRFGVEGRALMLKGADQLADAVQVTLGPKGRNVVIDQAYGAPKITKDGVTVAKNIEFRDKFENMGAQLLRQVANNTNDAAGDGTTSATVLTRAIYSEGCKSVAAGMNPQDLRRGIQLAVDHVVSELAKLSQDIDDKEKVAQVATISANSEKEIGDLISDAMERVGREGVITVQDGKTLYNELEVVEGMKFDRGYISPYFVTNSKNQACELENPYILLVEKKVSSAQGIAPMLEFVYKAQRPLLIIAEDVESEALAALILNRIRAGIKVCAVKAPGFGDNRKAGLQDMAVLTGAKVISEDVGLRLDNATPDILGTAKKVTITKDDTLILDGEGAKDAIAERVELLKDSIAQSTSDYEKEKLQERLAKLGGGIAVIKVGGASEVEVGEKKDRVVDALNATRAAVEEGIVPGGG 454

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BLAST of NO14G01730 vs. NCBI_GenBank
Match: XP_008862081.1 (chaperonin GroL [Aphanomyces invadans] >ETW08276.1 chaperonin GroL [Aphanomyces invadans])

HSP 1 Score: 629.0 bits (1621), Expect = 1.100e-176
Identity = 325/432 (75.23%), Postives = 378/432 (87.50%), Query Frame = 0

Query:    7 RRAPTR-ALTVQMRGMAGGKDVRFGVEGRAQMLMGVDKLADAVQVTLGPKGRNAIIDQPFGAPKITKDGVTVAKSIEFKERFVNMGAALVRQVASKTNDIAGDGTTTATVLTRAIFSEGCKAVAAGLNPMDLRRGTQLAVDHVVKVLNDISRAVTSKAEVSQVGTISANGEKAIGDLLADAMERVGKEGVITVQDGKTLHNELEVVEGMKFDRGYISPYFITDNKTQAAELENPYILLVEKKIASIQSLIPLLEMVVKTQRPLLIIAEDVESEALATLVVNKLRAGIKVAAVKAPGFGDNRKATLQDIAVLTGGQVISEDLGLKVENVTEDMLGTSKKVTVSKDDTLILHGNGAREAIDERCVLLKDSIAATASDYEKEKLQERLAKLSGGVAVIKVGGGSEVEVNEKKDRVVDALNATRAAVEQGIVPGGG 438
            ++ PT+ A T+  R  A GKD+RFGVEGRA ML G D+LADAVQVTLGPKGRN +IDQ +GAPKITKDGVTVAK+IEF+++F NMGA L+RQVA+ TND AGDGTT+ATVLTRAI+SEGCK+VAAG+NP DLRRG QLAVDHVV  L  +S+ +  K +V+QV TISAN EK IGDL++DAMERVG+EGVITVQDGKTL+NELEVVEGMKFDRGYISPYF+T++K QA ELENPYILLVEKK++S Q + P+LE V K QRPLLIIAEDVESEALA L++N++RAGIKV AVKAPGFGDNRKA LQD+AVLTG +VISED+GL+++N T D+LGT+KKVT++KDDTLIL G GA++AI ER  LLKDSIA + SDYEKEKLQERLAKL GG+AVIKVGG SEVEV EKKDRVVDALNATRAAVE+GIVPGGG
Sbjct:    4 KQVPTQMARTMSKRFFASGKDIRFGVEGRALMLKGADQLADAVQVTLGPKGRNVVIDQAYGAPKITKDGVTVAKNIEFRDKFENMGAQLLRQVANNTNDAAGDGTTSATVLTRAIYSEGCKSVAAGMNPQDLRRGIQLAVDHVVSELAKLSQDIDDKEKVAQVATISANSEKEIGDLISDAMERVGREGVITVQDGKTLYNELEVVEGMKFDRGYISPYFVTNSKNQACELENPYILLVEKKVSSAQGIAPMLEFVYKAQRPLLIIAEDVESEALAALILNRIRAGIKVCAVKAPGFGDNRKAGLQDMAVLTGAKVISEDVGLRLDNATPDILGTAKKVTITKDDTLILDGEGAKDAIAERVELLKDSIAQSTSDYEKEKLQERLAKLGGGIAVIKVGGASEVEVGEKKDRVVDALNATRAAVEEGIVPGGG 435

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BLAST of NO14G01730 vs. NCBI_GenBank
Match: XP_008604447.1 (chaperonin GroL [Saprolegnia diclina VS20] >XP_012196892.1 chaperonin GroL [Saprolegnia parasitica CBS 223.65] >EQC41878.1 chaperonin GroL [Saprolegnia diclina VS20] >KDO32441.1 chaperonin GroL [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 626.7 bits (1615), Expect = 5.600e-176
Identity = 322/437 (73.68%), Postives = 380/437 (86.96%), Query Frame = 0

Query:    1 MLRQILRRAPTRALTVQMRGMAGGKDVRFGVEGRAQMLMGVDKLADAVQVTLGPKGRNAIIDQPFGAPKITKDGVTVAKSIEFKERFVNMGAALVRQVASKTNDIAGDGTTTATVLTRAIFSEGCKAVAAGLNPMDLRRGTQLAVDHVVKVLNDISRAVTSKAEVSQVGTISANGEKAIGDLLADAMERVGKEGVITVQDGKTLHNELEVVEGMKFDRGYISPYFITDNKTQAAELENPYILLVEKKIASIQSLIPLLEMVVKTQRPLLIIAEDVESEALATLVVNKLRAGIKVAAVKAPGFGDNRKATLQDIAVLTGGQVISEDLGLKVENVTEDMLGTSKKVTVSKDDTLILHGNGAREAIDERCVLLKDSIAATASDYEKEKLQERLAKLSGGVAVIKVGGGSEVEVNEKKDRVVDALNATRAAVEQGIVPGGG 438
            ML + + RA ++      R  + GKD+RFGVEGRA ML G D+LADAVQVTLGPKGRN +IDQ +GAPKITKDGVTVAK+IEFK++F NMGA L+RQVA+ TND AGDGTT+ATVLTRAI+SEGCK+VAAG+NP DLRRG Q+AVD VV  L  +S+ +  K +V+QV TISAN EK IGDL++DAMERVG+EGVITVQDGKTL+NELEVVEGMKFDRGYISPYF+T+ KTQA ELENPYILLVEKK++S  ++ PLLE V K  RPLLIIAEDVESEALA L++N++RAGIKV AVKAPGFGDNRKA LQD+AVLTG +V+SED+G++++N T D+LG +KK+T++KDDTLILHG G++EAI+ERC+LLKDSIA+T SDYEKEKLQERLAKL GG+AVIKVGG SEVEV EKKDRVVDALNATRAAVE+GIVPGGG
Sbjct:    1 MLSKQMSRAASK------RFFSSGKDIRFGVEGRALMLKGADQLADAVQVTLGPKGRNVVIDQAYGAPKITKDGVTVAKNIEFKDKFENMGAQLLRQVANNTNDAAGDGTTSATVLTRAIYSEGCKSVAAGMNPQDLRRGIQMAVDFVVAELATLSQDIDDKEKVAQVATISANSEKEIGDLISDAMERVGREGVITVQDGKTLYNELEVVEGMKFDRGYISPYFVTNTKTQACELENPYILLVEKKVSSAAAIAPLLEFVYKQSRPLLIIAEDVESEALAALILNRIRAGIKVCAVKAPGFGDNRKAGLQDMAVLTGAKVVSEDVGIRLDNATPDLLGCAKKITITKDDTLILHGEGSKEAIEERCLLLKDSIASTTSDYEKEKLQERLAKLGGGIAVIKVGGASEVEVGEKKDRVVDALNATRAAVEEGIVPGGG 431

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BLAST of NO14G01730 vs. NCBI_GenBank
Match: XP_009842908.1 (chaperonin GroL [Aphanomyces astaci] >ETV67651.1 chaperonin GroL [Aphanomyces astaci])

HSP 1 Score: 626.7 bits (1615), Expect = 5.600e-176
Identity = 322/425 (75.76%), Postives = 373/425 (87.76%), Query Frame = 0

Query:   13 ALTVQMRGMAGGKDVRFGVEGRAQMLMGVDKLADAVQVTLGPKGRNAIIDQPFGAPKITKDGVTVAKSIEFKERFVNMGAALVRQVASKTNDIAGDGTTTATVLTRAIFSEGCKAVAAGLNPMDLRRGTQLAVDHVVKVLNDISRAVTSKAEVSQVGTISANGEKAIGDLLADAMERVGKEGVITVQDGKTLHNELEVVEGMKFDRGYISPYFITDNKTQAAELENPYILLVEKKIASIQSLIPLLEMVVKTQRPLLIIAEDVESEALATLVVNKLRAGIKVAAVKAPGFGDNRKATLQDIAVLTGGQVISEDLGLKVENVTEDMLGTSKKVTVSKDDTLILHGNGAREAIDERCVLLKDSIAATASDYEKEKLQERLAKLSGGVAVIKVGGGSEVEVNEKKDRVVDALNATRAAVEQGIVPGGG 438
            A +V  R  A GKD+RFGVEGRA ML G D+LADAVQVTLGPKGRN +IDQ +GAPKITKDGVTVAK+IEF+++F NMGA L+RQVA+ TND AGDGTT+ATVLTRAI+SEGCK+VAAG+NP DLRRG QLAVDHVV  L  +S+ +  K +V+QV TISAN EK IGDL++DAMERVG+EGVITVQDGKTL+NELEVVEGMKFDRGYISPYF+T++KTQ+ ELENPYILLVEKK++S Q + P+LE V K QRPLLIIAEDVESEALA L++N++RAGIKV AVKAPGFGDNRKA LQD+AVLTG +VISED+GL+++N T D+LGT+KKVT++KDDTLIL G G ++AI ER  LLKDSIA + SDYEKEKLQERLAKL GG+AVIKVGG SEVEV EKKDRVVDALNATRAAVE+GIVPGGG
Sbjct:   11 ARSVSKRFFASGKDIRFGVEGRALMLKGADQLADAVQVTLGPKGRNVVIDQAYGAPKITKDGVTVAKNIEFRDKFENMGAQLLRQVANNTNDAAGDGTTSATVLTRAIYSEGCKSVAAGMNPQDLRRGIQLAVDHVVAELAKLSQDIDDKEKVAQVATISANSEKEIGDLISDAMERVGREGVITVQDGKTLYNELEVVEGMKFDRGYISPYFVTNSKTQSCELENPYILLVEKKVSSAQGIAPMLEFVYKAQRPLLIIAEDVESEALAALILNRIRAGIKVCAVKAPGFGDNRKAGLQDMAVLTGAKVISEDVGLRLDNATPDILGTAKKVTITKDDTLILDGEGPKDAIAERVELLKDSIAGSTSDYEKEKLQERLAKLGGGIAVIKVGGASEVEVGEKKDRVVDALNATRAAVEEGIVPGGG 435

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BLAST of NO14G01730 vs. NCBI_GenBank
Match: OQR94639.1 (chaperonin CPN60-1, mitochondrial precursor [Achlya hypogyna])

HSP 1 Score: 626.3 bits (1614), Expect = 7.300e-176
Identity = 317/419 (75.66%), Postives = 373/419 (89.02%), Query Frame = 0

Query:   19 RGMAGGKDVRFGVEGRAQMLMGVDKLADAVQVTLGPKGRNAIIDQPFGAPKITKDGVTVAKSIEFKERFVNMGAALVRQVASKTNDIAGDGTTTATVLTRAIFSEGCKAVAAGLNPMDLRRGTQLAVDHVVKVLNDISRAVTSKAEVSQVGTISANGEKAIGDLLADAMERVGKEGVITVQDGKTLHNELEVVEGMKFDRGYISPYFITDNKTQAAELENPYILLVEKKIASIQSLIPLLEMVVKTQRPLLIIAEDVESEALATLVVNKLRAGIKVAAVKAPGFGDNRKATLQDIAVLTGGQVISEDLGLKVENVTEDMLGTSKKVTVSKDDTLILHGNGAREAIDERCVLLKDSIAATASDYEKEKLQERLAKLSGGVAVIKVGGGSEVEVNEKKDRVVDALNATRAAVEQGIVPGGG 438
            R  + GK++RFGVEGRA ML G D+LADAVQVTLGPKGRN +IDQ +GAPKITKDGVTVAK+IEFK++F NMGA L+RQVA+ TND AGDGTT+ATVLTRAI+SEGCK+VAAG+NP DLRRG Q+AVDHVV  L  +S+ +  K +V+QV TISAN EK IGDL++DAMERVG+EGVITVQDGKTL+NELEVVEGMKFDRGYISPYF+T++KTQA EL+NPYILLVEKK++S  S+ PLLE V K  RPLLIIAED+ESEALA L++N++RAGIKV AVKAPGFGDNRKA LQD+AVLTG +V+SED+G++++N T D+LG +KK+TV+KDDTLIL G G++EAI+ERC+LLKDSIA+T SDYEKEKLQERLAKL GG+AVIKVGG SEVEV EKKDRVVDALNATRAAVE+GIVPGGG
Sbjct:   13 RFFSSGKEIRFGVEGRALMLKGADQLADAVQVTLGPKGRNVVIDQAYGAPKITKDGVTVAKNIEFKDKFENMGAQLLRQVANNTNDAAGDGTTSATVLTRAIYSEGCKSVAAGMNPQDLRRGIQMAVDHVVGELAKLSQDIDDKEKVAQVATISANSEKEIGDLISDAMERVGREGVITVQDGKTLYNELEVVEGMKFDRGYISPYFVTNSKTQACELDNPYILLVEKKVSSAASIAPLLEFVYKQSRPLLIIAEDIESEALAALILNRIRAGIKVCAVKAPGFGDNRKAGLQDMAVLTGAKVVSEDVGIRLDNATPDLLGCAKKITVTKDDTLILDGEGSKEAIEERCLLLKDSIASTTSDYEKEKLQERLAKLGGGIAVIKVGGASEVEVGEKKDRVVDALNATRAAVEEGIVPGGG 431

[Close]

BLAST of NO14G01730 vs. NCBI_GenBank
Match: OQR94786.1 (chaperonin CPN60-1, mitochondrial precursor [Thraustotheca clavata])

HSP 1 Score: 621.3 bits (1601), Expect = 2.300e-174
Identity = 320/437 (73.23%), Postives = 380/437 (86.96%), Query Frame = 0

Query:    1 MLRQILRRAPTRALTVQMRGMAGGKDVRFGVEGRAQMLMGVDKLADAVQVTLGPKGRNAIIDQPFGAPKITKDGVTVAKSIEFKERFVNMGAALVRQVASKTNDIAGDGTTTATVLTRAIFSEGCKAVAAGLNPMDLRRGTQLAVDHVVKVLNDISRAVTSKAEVSQVGTISANGEKAIGDLLADAMERVGKEGVITVQDGKTLHNELEVVEGMKFDRGYISPYFITDNKTQAAELENPYILLVEKKIASIQSLIPLLEMVVKTQRPLLIIAEDVESEALATLVVNKLRAGIKVAAVKAPGFGDNRKATLQDIAVLTGGQVISEDLGLKVENVTEDMLGTSKKVTVSKDDTLILHGNGAREAIDERCVLLKDSIAATASDYEKEKLQERLAKLSGGVAVIKVGGGSEVEVNEKKDRVVDALNATRAAVEQGIVPGGG 438
            ML + ++   +RA     R  A GK++RFGVEGRA ML G D+LADAVQVTLGPKGRN +IDQ +GAPKITKDGVTVAK+IEFK++F NMGA L+RQVA+ TND AGDGTT+ATVLTRAIFSEGCK+VAAG+NP DLRRG Q+AVDHVV  L  +S+ +  K +V+QV TISAN EK IGDL++DAMERVG+EGVITVQDGKT++NELEVVEGMKFDRGYISPYF+T++K Q+ ELENP+ILLVEKK++S  S+ PLLE V K  RPLLIIAEDVESEALA L++N++RAGIKV AVKAPGFGDNRKA+LQD+AVLTG +V+SED+G++++N T D+LG +KK+TV+KDDTLIL G G++EAI+ER +LLKDSIA+T SDYEKEKLQERLAKL GG+AVIKVGG SEVEV EKKDRVVDALNATRAAVE+GIVPGGG
Sbjct:    1 MLSKQVKSTVSRA--ASKRFFASGKEIRFGVEGRALMLKGADQLADAVQVTLGPKGRNVVIDQAYGAPKITKDGVTVAKNIEFKDKFENMGAQLLRQVANNTNDAAGDGTTSATVLTRAIFSEGCKSVAAGMNPQDLRRGIQMAVDHVVGELAKLSQDIDDKEKVAQVATISANSEKEIGDLISDAMERVGREGVITVQDGKTMYNELEVVEGMKFDRGYISPYFVTNSKNQSCELENPFILLVEKKVSSAASIAPLLEFVYKQSRPLLIIAEDVESEALAALILNRIRAGIKVCAVKAPGFGDNRKASLQDMAVLTGAKVVSEDVGIRLDNATPDLLGCAKKITVTKDDTLILDGEGSKEAIEERVLLLKDSIASTTSDYEKEKLQERLAKLGGGIAVIKVGGASEVEVGEKKDRVVDALNATRAAVEEGIVPGGG 435

[Close]

BLAST of NO14G01730 vs. NCBI_GenBank
Match: XP_009535382.1 (hypothetical protein PHYSODRAFT_549587 [Phytophthora sojae] >EGZ08749.1 hypothetical protein PHYSODRAFT_549587 [Phytophthora sojae])

HSP 1 Score: 620.5 bits (1599), Expect = 4.000e-174
Identity = 321/419 (76.61%), Postives = 369/419 (88.07%), Query Frame = 0

Query:   19 RGMAGGKDVRFGVEGRAQMLMGVDKLADAVQVTLGPKGRNAIIDQPFGAPKITKDGVTVAKSIEFKERFVNMGAALVRQVASKTNDIAGDGTTTATVLTRAIFSEGCKAVAAGLNPMDLRRGTQLAVDHVVKVLNDISRAVTSKAEVSQVGTISANGEKAIGDLLADAMERVGKEGVITVQDGKTLHNELEVVEGMKFDRGYISPYFITDNKTQAAELENPYILLVEKKIASIQSLIPLLEMVVKTQRPLLIIAEDVESEALATLVVNKLRAGIKVAAVKAPGFGDNRKATLQDIAVLTGGQVISEDLGLKVENVTEDMLGTSKKVTVSKDDTLILHGNGAREAIDERCVLLKDSIAATASDYEKEKLQERLAKLSGGVAVIKVGGGSEVEVNEKKDRVVDALNATRAAVEQGIVPGGG 438
            R  + GKD+RFGVEGRA ML G D+LA+AVQVTLGPKGRN +IDQ +GAPKITKDGVTVA+S++FK++F NMGA LVR VAS TND AGDGTT+ATVLTRAIFSEGCK+VAAG+NP DLRRG Q+AVDHVV  L  +S+ V  K +V+QV TISAN E  IG+L++DAMERVGKEGVITVQDGKTL+NELEVVEGMKFDRG+ISPYF+TDNKTQ+ E+ENPYILLVEKK++S+QS+IP+LE VVK QRPLLIIAEDVESEALA LV+NK+R G+KV AVKAPGFGDNRKATLQD+AVLTG  VISEDLG ++E  T DMLG++KKVTV+KDDTL+L G GA EA++ER  LL+ SI +T S+YEKEKLQERLAKLSGGVAVIKVGG SEVEV EKKDRVVDALNATRAAV +GIVPGGG
Sbjct:   21 RLFSSGKDIRFGVEGRAAMLKGADQLANAVQVTLGPKGRNVVIDQSYGAPKITKDGVTVARSVDFKDKFENMGAQLVRSVASSTNDAAGDGTTSATVLTRAIFSEGCKSVAAGMNPTDLRRGIQMAVDHVVDGLQKLSQDVADKEKVAQVATISANSETEIGNLISDAMERVGKEGVITVQDGKTLYNELEVVEGMKFDRGFISPYFVTDNKTQSCEMENPYILLVEKKVSSLQSIIPMLETVVKQQRPLLIIAEDVESEALAALVINKIRGGVKVCAVKAPGFGDNRKATLQDMAVLTGATVISEDLGHRLETATPDMLGSAKKVTVTKDDTLLLDGAGAPEAVEERGNLLRASIESTTSEYEKEKLQERLAKLSGGVAVIKVGGASEVEVGEKKDRVVDALNATRAAVAEGIVPGGG 439

The following BLAST results are available for this feature:

BLAST of NO14G01730 vs. NCBI_GenBank

BLAST of NO14G01730 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
EWM24608.1	2.600e-226	96.34	Chaperonin Cpn60/TCP-1 [Nannochloropsis gaditana]	[more]
EWM24609.1	3.200e-216	97.11	Chaperonin Cpn60/TCP-1 [Nannochloropsis gaditana]	[more]
CBJ29791.1	2.300e-177	75.69	conserved unknown protein [Ectocarpus siliculosus]	[more]
XP_008862079.1	1.100e-176	75.23	chaperonin GroL [Aphanomyces invadans] >ETW08274.1...	[more]
XP_008862081.1	1.100e-176	75.23	chaperonin GroL [Aphanomyces invadans] >ETW08276.1...	[more]
XP_008604447.1	5.600e-176	73.68	chaperonin GroL [Saprolegnia diclina VS20] >XP_012...	[more]
XP_009842908.1	5.600e-176	75.76	chaperonin GroL [Aphanomyces astaci] >ETV67651.1 c...	[more]
OQR94639.1	7.300e-176	75.66	chaperonin CPN60-1, mitochondrial precursor [Achly...	[more]
OQR94786.1	2.300e-174	73.23	chaperonin CPN60-1, mitochondrial precursor [Thrau...	[more]
XP_009535382.1	4.000e-174	76.61	hypothetical protein PHYSODRAFT_549587 [Phytophtho...	[more]

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Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL140	nonsL140	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
nonsL138	nonsL138	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR069	ncniR069	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR025	ngnoR025	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR023	ngnoR023	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NSK002414	NSK002414	Nannochloropsis salina (N. salina CCMP1776)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO14G01730.1	NO14G01730.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|36428	gene_5743	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene
Naga_100171g8	gene5874	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO14G01730.1	NO14G01730.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO14G01730 ID=NO14G01730|Name=NO14G01730|organism=Nannochloropsis oceanica|type=gene|length=2737bp
TTGTGTGTGGCACGGTTGCATGATGCAGGATACTTCGCTCCGCACAGAAT
GCCTTTGTTCCTGTTCGTACATGCCTGGCCCTCCCTTGGCATCTATTGCT
CGAGAGGAGCCCCATACTGACGCCAAACACTGCCGATAGACTTATTCTGT
CGCCCTGCTTTCTCCCCTCCAGTCCTTCCTACCACAGAACAACTTCATCA
TCATGCTCCGACAAATCTTGCGCAGGGCCCCAACCCGGGCGCTCACGGTG
CAAATGCGTGGCATGGCAGgtaaactattgggtggcgaataggatttggt
gggcttgctatagacagcgcatggagcagagtgtggcggaaccagccgga
gatgcaggaaggtgccgtgtgcggcacgcggcaggccaggcaaggggcag
agttcgcacacgctccttattttgatgagatgaagccttatttccgagtc
gtaaaactaagaaagtaaaagtagtttgtttttgtgtattgtgttcttct
gtatctcagatcatcctacgcctcccccattgtctcctcacacaacatcc
ctcatcccctccctttcctctcacacctgaaaagGCGGCAAGGACGTCCG
CTTCGGCGTGGAAGGCCGCGCACAGATGCTCATGGGCGTCGACAAGCTAG
CCGACGCCGTGCAAGTCACTTTGGGTCCAAAGGGTCGCAACGCCATTATT
GACCAGCCTTTTGGAGCCCCCAAGATTACGAAGGACGGAGTCACCGTTGC
AAAGAGCATTGAGTTCAAGGAGCGCTTCGTCAACATGGGTGCGGCGCTTG
TACGGCAGGTGGCGAGCAAGACCAATGACATTGCTGGGGATGGAACGACG
ACAGCCACGGTCCTTACCCGGGCGATTTTCTCCGAGGGCTGCAAAGCTGT
GGCTGCTGGGCTGAACCCAATGGACCTGCGAAGGGGGACGCAGTTGGCGG
TGGATCACGTGGTGAAGGTGTTAAATGATATTTCGCGCGCTGTGACTAGT
AAGGCGGAGGTGTCTCAGGTGGGGACAATCTCGGCCAACGGAGAGAAGGC
CATTGGAGATTTGCTGGCGGATGCGATGGAGAGGGTGGGGAAGGAGGGCG
TGATCACCGTGCAGGACGGCAAGACCCTGCACAACGAGTTGGAGGTGGTG
GAAGGGATGAAATTCGATCGTGGGTACATCTCTCCTTATTTCATCACAGA
CAACAAGACTCAGGCGGCCGAGCTTGAAAACCCTTACATCCTGTTAGTCG
AGAAGAAAATCGCATCCATCCAATCCCTCATCCCTCTATTGGAAATGGTG
GTGAAGACCCAGCGTCCCCTTCTCATCATTGCGGAAGACGTCGAGTCCGA
AGCCTTGGCGACGCTGGTCGTAAACAAACTGAGGGCAGGAATCAAAGTGG
CTGCTGTGAAGGCTCCCGGTTTTGGGGATAACAGGAAGGCGACTTTGCAA
GATATTGCCGTCTTGACGGGCGGGCAGGTGATCAGTGAGGACTTGGGGTT
GAAAGTCGAGAATGTGACGGAGGACATGTTGGGGACGTCCAAAAAGGTGA
CGGTCTCGAAAGATGACACCTTAATTTTACATGGCAATGGCGCGCGGGAG
GCGATCGACGAGCGGTGCGTGTTGCTTAAGGATTCCATCGCTGCCACTGC
ATCTGACTACGAGAAGGAGAAGCTGCAGGAACGCCTAGCCAAACTCTCGG
GGGGGGTGGCGGTGATCAAGGTTGGTGGTGGAAGCGAGGTTGAGGTGAAC
GAGAAGAAGGACAGAGTGGTGGATGCCTTGAACGCGACCAGGGCGGCTGT
CGAGCAAGGAATTGTCCCGGGGGGGGGTTGGCACTGCTGTGGGCCAGCAA
GCAGTTGGAGGAGGTCAAGAGTAAACTGACCAACATGGACCAGAGAATCG
GCGTGGAGATCATCGAGAAGGCACTCAAGGCACCCGCGAGGTCGATCGCA
AACAATGCTGGGGTGGAGGGGGCGGTTGTGGTGGGGGAGTTGCTGAAGAA
GGAAAAGCCGGAGTTGGGGTACAACGCCCAGACTGACGAGTACGTCAATA
TGTTCGAGGCGGGGATCATTGACCCGACCAAGGTGGTAAGGACTGCTTTG
GTAGATGCCCAGTCGGTTGCTGCCTTGATGATTACGACCGAGGCAATGAT
TGCAGATTTGCCCAAGGAGGAGGGGGAGGGGGGGGGGATGCCGGGAATGG
GTGGGATGGGTGGGATGGGCGGGATGGGCGGGATGGGGTTCTAATGTGAG
AGAAAGTGAGTACCGAGTATAGAAGTTGAGGAGTATCGAATGTTTGGTAC
ATACACTATTTCATTGAAGGGGTGTAAGCCCTGTGTGTGAATGTGTGTGT
CGGGGAATGGGGGGTTAGCGACTGACGGGCGGACTCATGGGGTGTATCTG
GTACGGTGTGTGGCGGGAATGAAGAGAGAGTGTGTGAGAGCGAGAAAGAG
AAAGAGAAAGAGTAGACGTATCACGATTTTGTGTCCTCCAAGATGTGACT
GCCGGTGCTTCTTTTCATATTTTCTCTCTCCTTAGAACTTGAAAATATGT
CCTCATAGCGAGGCAGTGCATGATGGGAGGAGCAACAACCAAACATAAAA
GGAAAATTAAGGCGAAAGACAATCTACGACCTAAAAGACAGGCCCCAAAT
TTTGCGAGAGGGTGGTGTCATGGGGCAGTTGCGGACAACGTGCGGACTGT
CTTGTGCATCCAAATACAAACTCTCGTCACATCCTTT

protein sequence of NO14G01730.1

>NO14G01730.1-protein ID=NO14G01730.1-protein|Name=NO14G01730.1|organism=Nannochloropsis oceanica|type=polypeptide|length=454bp
MLRQILRRAPTRALTVQMRGMAGGKDVRFGVEGRAQMLMGVDKLADAVQV
TLGPKGRNAIIDQPFGAPKITKDGVTVAKSIEFKERFVNMGAALVRQVAS
KTNDIAGDGTTTATVLTRAIFSEGCKAVAAGLNPMDLRRGTQLAVDHVVK
VLNDISRAVTSKAEVSQVGTISANGEKAIGDLLADAMERVGKEGVITVQD
GKTLHNELEVVEGMKFDRGYISPYFITDNKTQAAELENPYILLVEKKIAS
IQSLIPLLEMVVKTQRPLLIIAEDVESEALATLVVNKLRAGIKVAAVKAP
GFGDNRKATLQDIAVLTGGQVISEDLGLKVENVTEDMLGTSKKVTVSKDD
TLILHGNGAREAIDERCVLLKDSIAATASDYEKEKLQERLAKLSGGVAVI
KVGGGSEVEVNEKKDRVVDALNATRAAVEQGIVPGGGWHCCGPASSWRRS
RVN*

Synonyms

Publications