rna6078, rna6078 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6078
Unique Name	rna6078
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2584
Alignment location	CM002467.1:523957..526892 +

Link to JBrowse

Properties


Property Name	Value
Product	Chaperonin Cpn60/TCP-1
Orig transcript id	gnl\|cribi\|Naga_100171g8.2666.mrna
Orig protein id	gnl\|cribi\|Naga_100171g8.2666
Gbkey	mRNA
Note	encoded by transcript variant 1; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002467.1	supercontig	CM002467.1:523957..526892 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100171g8	gene5874	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6078	rna6078-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24608.1	cds6063	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002467.1:523957..526892+
coding sequence from alignment at CM002467.1:523957..526892+

mRNA sequence

>rna6078 ID=rna6078|Name=rna6078|organism=Nannochloropsis gaditana|type=mRNA|length=2584bp
GGATGAGTTGGTAAGTGGATGCTCATGCCGTCACCTGTCCTTCGCTTCGA
TCTGAACAGGCTTTCTGAAGGGGGAAACGTGTCTTGATCGCGTTCTTCGA
TGGAGAGAGCAAGGAGGGGTGGCGGCCAAGGGGGCTTTGGCGTTGCTAGC
ATGCGCATGACCACAGTGTCACGTATGACCATATTCTTTGGTGTAGTGTT
GTTGGTGGAACTGGTTACGCTGGTTTGTATCAAACACTCGACACTCCCCC
GGGATCCTGCGCCGGATACAGGGCACATGTTCGCACACGCGCCTGAATCA
CAGAAAGAAGGTTTTTCACGCTCACAGGAAGAGAGACGTGAGACCATGGC
GATAAACGAAACACTCCCCTACGAACCTCCACGGTTACCTAGTCCCTTGA
CCGTTGCATGTCTTTCCTCCCAGCGCACGGTGTCCACCACGGCCTTCAAT
CTGGTTCGTATCCTCATGGAACGTGTGGATGCAAATTCTATAAGTGGTTG
GGAACACGACGTAGTCGGCTCTCGGCCTAACGAACGCCTGGAAGATATCC
TTCCGAAGGTGCATGGAAAAGTAAGCACGGTCTACAAGTCCCATGCGGGC
GGAGCCGAGCATCACCAGCACGCCGACTTCGTAGTGGTCACCTACCGAGA
CCCGTACGAGATAATGTGCAGCATGGGGCGCATGTTCCAGCCCAAAATTT
TCAGGAGCGAGCACAAAGCCGTGGAGAAATGTCGTAAGATGGCAAGAAAC
GAGGCCGGGATCAAGGACTGGGCGGGCAGGGAGGGAACACGGTCCCTGCA
CATCAACTCCGACGTCTTGAAAAGCGCGGAGGGGATGACGGAGGTAGTGA
GGCTGCTAATGGAAAAGTGGGGTGTACAAGGAGGCAGCCTGGATCCCCGA
AGCATCACCAGGGAGGTGATGGACCTAGAGTCTCCGCCCGAAGGCGTCTT
TTCCGTTGCCAATCCCCGGAGTGAGCTGCACCCCCACCACATCACAGGGT
CGGGGGACACGGAGGGCGACTGCGACGTCTTGAAAGAGGTGCTCGCGCAG
GACCAAGTTTGCCGTGCCTGGCACGACACCTATGCGGCCATGTTCCCGGA
GGGCAGCCCCTCCATCTTGGATGAAAGGTCGGCTCACGCCGCCGTGGAGG
AAGCGAGGCGCACTCTGGAGAGCGGCGGCTTTCAGATCCATAATGGGGAT
ACAGGGAACGCACGGCCGAGCCACAACGCCAAAAGAGAGCGCCTGGCTTC
CAAAGAAGCTAGAAGCCACATAAGAAGGCACCAGCAGGGTCGCGGGGCGT
GGGAGGCGGACGACAGGAGCGGGACTGGCGGGCCAGACAAGGAGAGCCAC
AGCCAAATATCTGCTGGCGAGGACGCTTACATGGACGTTCATGCCTCCTC
TGAGACCGCATTTCCTTCCGACAAGTACTTCTTCTGCCTTCTCAACGGCG
GACTGAATGATATCACCGTCGAGATGTGGAAGTGCATCGAGTTCGCCCGG
ACGACCCAGCGAGTTCTTGTTCTCGCGCACGAGAACTACAACCCAGTGGC
CGCTCCGTGGACGCCCTACTTCACCCTGGAGACCATCCCTGGCCTGAGGA
CCATGACCCCTTACCAGGCGGCCACCGCCATCAACCACCGGGGGAGGGCC
GTCAGCGTCTTCCCCTCGCGCCTCCAGCACCACCTCGACCCCTTGCTTGG
CCCCAAGCCCGCACAGGGGGACTCTCCCGAAGGTCTGGATCCCCGACAGC
CCTTTCCTTTCAAATTCGAGAAGCTCAAGCACCTCAAGTTCCGCTTCGAG
AACACCTACCACCAGGACGTGGTCGTTTTTCACCGGCAGGGCAACGTGGG
CTCCGGCGTGGTCGCGCTAAGACACATAAAATTTGCCGAGAGTATTCGAA
GCACGTTTCTTGAACGTTGGTCGAAGCTGGAGAAGCCCTACGTGGCCCTG
CACCTGCGGCGGACTGACAAAAGCTGCAGCGACGAGAAAATGGAGCGATT
GCTTCAGGTCCTACACCGGATGGGAACTTCAGACTTTTGGCCAGAGGGAC
CCATATACGTGGCCAGTGACCATCCAGAATTGCCTGAGGACTTTCGAGAA
GAGCTGGAGGAGAGGCAAAAGCGGCAGGTGGTATCTTTCACATATCATCC
GCCGGTGCACGAGCAACGAAATGCCTTGCATGAGGATCCTGATGAGCAAA
AGATGAAGGAGATGCGTCGCCATAGTTTGGGTATAGAAGGCCTTCACTTG
CATGATGACTTGAGCCCCAAGGAGAAGCATCAGACGAACATAGATGCTTT
TGTAGATTTGTTGTTACTCGCCATGTCTGAAGAGCTCCTTACCTCGTGCG
GAGGCTACAGCCATTTGGCAAGGGAGCTGCACCAAAATCAAGACGTTGTC
TTTTCAGTCCTTGGTTTGCCAGCACCAGGACCAAACGATGACCTAGATAT
GCTTTTGGAAGCCGCTGCAGCTGCGAGAGTTGAACCAATAAAAGGAAAGC
TAGCGGCGGAGTAAATAGTTAGGGAAATTCATGCGATGGCCGGGTTTGAT
GGAACTCAAATAAAAAAATAAGTAAAAGAATAGA

protein sequence of rna6078

>rna6078-protein ID=rna6078-protein|Name=rna6078|organism=Nannochloropsis gaditana|type=polypeptide|length=575bp
MLRQVLRRAPSRALAMQMRGMAGGKDVRFGVDGRAQMLMGVDKLADAVQV
TLGPKGRNAIIDQPFGAPKITKDGVTVAKSIEFKERFVNMGAALVRQVAS
KTNDVAGDGTTTATVLTRAIFSEGCKAVAAGLNPMDLRRGTQLAVDHVVG
VLNQISRAVTSKAEVSQVGTISANGEKVIGDLLADAMERVGKEGVITVQD
GKTLHNELEVVEGMKFDRGYISPYFITDNKTQTAELENPYILLVEKKITS
IQSLIPLLEMVVKSQRPLLIIAEDVESEALATLVVNKLRAGIKVAAVKAP
GFGDNRKATLQDIAVLTGGQVISEDLGLKVENTTEDMLGTSKKVTVSKDD
TLILHGNGARDAIDERCLLLKDSIAATASDYEKEKLQERLAKLSGGVAVI
KVGGASEVEVNEKKDRVVDALNATRAAVEQGIVPGGGLALLWASKQLEDV
KAKVSNMDQRIGVEIIEKALIAPVKSIANNAGVEGAVVVGELMKKDKPEL
GYNAQTGEYVDMFEAGIIDPTKVVRTALVDAQSVAALMITTEAMVADLPK
DEGDAPAMPGMGGMGGMGGMGGMGF

mRNA from alignment at CM002467.1:523957..526892+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6078 ID=rna6078|Name=rna6078|organism=Nannochloropsis gaditana|type=mRNA|length=2936bp|location=Sequence derived from alignment at CM002467.1:523957..526892+ (Nannochloropsis gaditana)
GAGTCACTCTTCCGTTCACTTGCGAGTGCGCCATGCCCCCTGAACAATGA
CGTCAATACTGAATTCTTTGGCACTTTGCAATGAGCACGACTCCTGAAGT
ATGTAGGGTTACGGAGGCTCTTGTTGTCATTCTTGGACGAGAAGATACTT
CCGGTTCCAGGAAGCTTCCAAACCTGCCCCCCTCACTCCTTTGTTCTTTC
TCAAATCTCACGCCTTTGCATCCTGTATTTTCTTTGTACAATCCGCATGC
TCATCACGTGGACCGAAATGCTCCTTTTAAATCCTTTTGCAGTGAACACA
GATCATCATGCTTCGACAAGTCTTGCGTCGTGCTCCCAGCCGGGCACTTG
CGATGCAGATGCGTGGCATGGCAGGTAAGCACTACAGATCCTCAGTGGAA
CATTTATAAGGATAAGGAAGGCAATATGACTATTGTGAGGGTGATATTAG
CTGCATGGTGAATTGAAACGCTGCCGGCAGACGACTTTGGGGATGAGAGT
GAAGTGAGTGCTCGTACACCTCCTGGGAGAATGTTCGTGGCCACGGGAAT
CAGTCAGGTCATCACCTTAAATTTAAAGCTCGTGTCGTTTTTATGAGCCA
TGGAATCTTTGGCACGCCACTTTATTGACAAACTTCTATGATCAcgtccc
ttctctcctcacCTCTTCTGCGCCACGGTTTCTTGCCCCTAACCTCccca
ggcgggaaggacgtTCGGTTTGGCGTGGACGGCCGCGCGCAGATGCTCAT
GGGCGTTGACAAGCTGGCGGACGCCGTACAAGTGACGTTGGGACCAAAAG
GCCGGAACGCCATCATCGACCAGCCGTTCGGAGCCCCCAAGATCACCAAG
GACGGCGTGACGGTGGCGAAGAGTATCGAATTTAAGGAGCGTTTTGTCAA
CATGGGCGCCGCGCTCGTGCGGCAGGTGGCGAGCAAGACCAACGATGTGG
CCGGGGACGggaccaccaccgccacggtGTTGACGCGGGCCATCTTCTCG
GAGGGTtgcaaggcggtggcggccggGCTGAACCCGATGGACCTGAGGAG
AGGCACGCAGCTCGCCGTCGACCACGTGGTGGGCGTTTTGAACCAGATCT
CCCGCGCCGTCACCTCCAAGGCGGAGGTGTCCCAGGTGGGAACGATCTCG
GCGAACGGGGAGAAAGTAATTGGAGACCTGCTGGCGGACGCGATGGAGCg
ggtgggcaaggagggcgtgatCACCGTCCAGGACGGAAAGACGCTTCACA
AcgagctggaggtggtggaggggatgaaaTTCGACCGGGGCTACATCTCC
CCCTATTTCATCACCGACAACAAGACCCAGACGGCGGAGCTTGAGAATCC
CTACATCCTGCTGGTCGAGAAGAAGATCACCTCCATTCAGTCCCTCATCC
CGCTCCTGGAGATGGTGGTGAAGAGCCAGCGGCCCCTGCTCATCATCGCC
GAAGACGTTGAGTCCGAGGCTCTGGCTACGCTGGTGGTCAACAAACTGCG
GGCCGGGATCAAGGTAGCGGCCGTGAAGGCTCCAGGCTTTGGAGACAACA
GGAAGGCGACGCTCCAGGACATCGCGGTGCTGACTGGGGGGCAGGTGATC
AGTGAGGACCTGGGCCTGAAGGTGGAGAATACCACGGAAGACATGCTGGG
CACTTCCAAGAAGGTGACAGTCTCTAAGGATGACACCCTCATTTTGCACG
GAAACGGGGCCCGGGACGCCATCGACGAGCGCTGCTTGCTGTTGAAGgac
tccatcgccgccacggcctcggactacgagaaggagaagctaCAGGAGCG
CTTGGCGAAGCTGTCGGGGGGCGTGGCGGTGATTAAGGTGGGCGGGGcct
cggaggtggaggtgaatGAGAAGAAGGACCGCGTGGTGGACGCTTTGAAT
GCGACgcgggcggcggtggagcagGGCATTGTCCCCGGGGGCGGGTTGGC
CCTGTTGTGGGCTTCCAAGCAGCTGGAGGACGTCAAGGCGAAGGTCTCGA
ACATGGACCAGCGCATCGGCGTCGAGATCATTGAGAAGGCGCTGATCGCA
CCCGTGAAATCCATCGCAAACAACGCCGGTGTGGAAGGGGCGGTGGTAGT
GGGGGAACTCATGAAGAAGGACAAACCAGAGCTGGGGTACAACGCGCAGA
CAGGCGAGTACGTTGACATGTTCGAGGCAGGGATTATCGACCCGACGAAG
GTGGTGCGAACGGCGCTGGTAGACGCCCAGTCGGTGGCGGCGTTGATGAT
TACGACGGAGGCCATGGTGGCGGACCTTCCCaaagacgagggggacgcAC
CGGCGATGCCGGGGATGGGAGGTATGGGAGGCATGGGTGGCATGGGTGGC
ATGGGCTTCTAGACGTCGGTGTGCACGGAGGTTGcctggtggggaaggaa
ggggagatggggagaCGCGAAGGAGCGGCAGTTGGGGGACTGGCCTGGGA
TACAGGTGTTGGATTGGAGAAGTGATGGAAGAGCAAGTGCGGAACGGGGC
GAGCATTGCCCAATATAGAGAAGCGAAAGAAGGCGGGTGATAGCGAGATA
GACATGTGGATGGGGAATGCAGCGATCTTGCtgaggatgaaaaggagtGG
TTAATCAACCAGGCTTGATTTTGGTAAATTACCTGGGCTGTCCATTTTCG
CCCGTCCTTTAGCTTCTGGCAATGTGTGGGAAGGATAGCGGTTCCAAAAC
CTATAAACAAGTATATCCGGAAGTGCATCCAGTAATGTGGTCGCGTACGT
CCAGAAATTGCAACTTAGTAATATCCATGCCGATTGATAAACCATTGGAC
ATTCTCCGTCTCTCAAACATGACAAAAGGTCCCCTCCTAGTATTCTTTTT
TGCTATTTACATCTCGCACATCCTATCTATGTAAGCCTTAACAGCAATCC
TATCAATCATGATGTATCCATAAGCGCCACCTTTCC

Coding sequence (CDS) from alignment at CM002467.1:523957..526892+

>rna6078 ID=rna6078|Name=rna6078|organism=Nannochloropsis gaditana|type=CDS|length=3456bp|location=Sequence derived from alignment at CM002467.1:523957..526892+ (Nannochloropsis gaditana)
ATGCTTCGACAAGTCTTGCGTCGTGCTCCCAGCCGGGCACTTGCGATGCA
GATGCGTGGCATGGCAGgcgggaaggacgtTCGGTTTGGCGTGGACGGCC
GCGCGCAGATGCTCATGGGCGTTGACAAGCTGGCGGACGCCGTACAAGTG
ACGTTGGGACCAAAAGGCCGGAACGCCATCATCGACCAGCCGTTCGGAGC
CCCCAAGATCACCAAGGACGGCGTGACGGTGGCGAAGAGTATCGAATTTA
AGGAGCGTTTTGTCAACATGGGCGCCGCGCTCGTGCGGCAGGTGGCGAGC
AAGACCAACGATGTGGCCGGGGACGggaccaccaccgccacggtGTTGAC
GCGGGCCATCTTCTCGGAGGGTtgcaaggcggtggcggccggGCTGAACC
CGATGGACCTGAGGAGAGGCACGCAGCTCGCCGTCGACCACGTGGTGGGC
GTTTTGAACCAGATCTCCCGCGCCGTCACCTCCAAGGCGGAGGTGTCCCA
GGTGGGAACGATCTCGGCGAACGGGGAGAAAGTAATTGGAGACCTGCTGG
CGGACGCGATGGAGCgggtgggcaaggagggcgtgatCACCGTCCAGGAC
GGAAAGACGCTTCACAAcgagctggaggtggtggaggggatgaaaTTCGA
CCGGGGCTACATCTCCCCCTATTTCATCACCGACAACAAGACCCAGACGG
CGGAGCTTGAGAATCCCTACATCCTGCTGGTCGAGAAGAAGATCACCTCC
ATTCAGTCCCTCATCCCGCTCCTGGAGATGGTGGTGAAGAGCCAGCGGCC
CCTGCTCATCATCGCCGAAGACGTTGAGTCCGAGGCTCTGGCTACGCTGG
TGGTCAACAAACTGCGGGCCGGGATCAAGGTAGCGGCCGTGAAGGCTCCA
GGCTTTGGAGACAACAGGAAGGCGACGCTCCAGGACATCGCGGTGCTGAC
TGGGGGGCAGGTGATCAGTGAGGACCTGGGCCTGAAGGTGGAGAATACCA
CGGAAGACATGCTGGGCACTTCCAAGAAGGTGACAGTCTCTAAGGATGAC
ACCCTCATTTTGCACGGAAACGGGGCCCGGGACGCCATCGACGAGCGCTG
CTTGCTGTTGAAGgactccatcgccgccacggcctcggactacgagaagg
agaagctaCAGGAGCGCTTGGCGAAGCTGTCGGGGGGCGTGGCGGTGATT
AAGGTGGGCGGGGcctcggaggtggaggtgaatGAGAAGAAGGACCGCGT
GGTGGACGCTTTGAATGCGACgcgggcggcggtggagcagGGCATTGTCC
CCGGGGGCGGGTTGGCCCTGTTGTGGGCTTCCAAGCAGCTGGAGGACGTC
AAGGCGAAGGTCTCGAACATGGACCAGCGCATCGGCGTCGAGATCATTGA
GAAGGCGCTGATCGCACCCGTGAAATCCATCGCAAACAACGCCGGTGTGG
AAGGGGCGGTGGTAGTGGGGGAACTCATGAAGAAGGACAAACCAGAGCTG
GGGTACAACGCGCAGACAGGCGAGTACGTTGACATGTTCGAGGCAGGGAT
TATCGACCCGACGAAGGTGGTGCGAACGGCGCTGGTAGACGCCCAGTCGG
TGGCGGCGTTGATGATTACGACGGAGGCCATGGTGGCGGACCTTCCCaaa
gacgagggggacgcACCGGCGATGCCGGGGATGGGAGGTATGGGAGGCAT
GGGTGGCATGGGTGGCATGGGCTTCTAGATGCTTCGACAAGTCTTGCGTC
GTGCTCCCAGCCGGGCACTTGCGATGCAGATGCGTGGCATGGCAGgcggg
aaggacgtTCGGTTTGGCGTGGACGGCCGCGCGCAGATGCTCATGGGCGT
TGACAAGCTGGCGGACGCCGTACAAGTGACGTTGGGACCAAAAGGCCGGA
ACGCCATCATCGACCAGCCGTTCGGAGCCCCCAAGATCACCAAGGACGGC
GTGACGGTGGCGAAGAGTATCGAATTTAAGGAGCGTTTTGTCAACATGGG
CGCCGCGCTCGTGCGGCAGGTGGCGAGCAAGACCAACGATGTGGCCGGGG
ACGggaccaccaccgccacggtGTTGACGCGGGCCATCTTCTCGGAGGGT
tgcaaggcggtggcggccggGCTGAACCCGATGGACCTGAGGAGAGGCAC
GCAGCTCGCCGTCGACCACGTGGTGGGCGTTTTGAACCAGATCTCCCGCG
CCGTCACCTCCAAGGCGGAGGTGTCCCAGGTGGGAACGATCTCGGCGAAC
GGGGAGAAAGTAATTGGAGACCTGCTGGCGGACGCGATGGAGCgggtggg
caaggagggcgtgatCACCGTCCAGGACGGAAAGACGCTTCACAAcgagc
tggaggtggtggaggggatgaaaTTCGACCGGGGCTACATCTCCCCCTAT
TTCATCACCGACAACAAGACCCAGACGGCGGAGCTTGAGAATCCCTACAT
CCTGCTGGTCGAGAAGAAGATCACCTCCATTCAGTCCCTCATCCCGCTCC
TGGAGATGGTGGTGAAGAGCCAGCGGCCCCTGCTCATCATCGCCGAAGAC
GTTGAGTCCGAGGCTCTGGCTACGCTGGTGGTCAACAAACTGCGGGCCGG
GATCAAGGTAGCGGCCGTGAAGGCTCCAGGCTTTGGAGACAACAGGAAGG
CGACGCTCCAGGACATCGCGGTGCTGACTGGGGGGCAGGTGATCAGTGAG
GACCTGGGCCTGAAGGTGGAGAATACCACGGAAGACATGCTGGGCACTTC
CAAGAAGGTGACAGTCTCTAAGGATGACACCCTCATTTTGCACGGAAACG
GGGCCCGGGACGCCATCGACGAGCGCTGCTTGCTGTTGAAGgactccatc
gccgccacggcctcggactacgagaaggagaagctaCAGGAGCGCTTGGC
GAAGCTGTCGGGGGGCGTGGCGGTGATTAAGGTGGGCGGGGcctcggagg
tggaggtgaatGAGAAGAAGGACCGCGTGGTGGACGCTTTGAATGCGACg
cgggcggcggtggagcagGGCATTGTCCCCGGGGGCGGGTTGGCCCTGTT
GTGGGCTTCCAAGCAGCTGGAGGACGTCAAGGCGAAGGTCTCGAACATGG
ACCAGCGCATCGGCGTCGAGATCATTGAGAAGGCGCTGATCGCACCCGTG
AAATCCATCGCAAACAACGCCGGTGTGGAAGGGGCGGTGGTAGTGGGGGA
ACTCATGAAGAAGGACAAACCAGAGCTGGGGTACAACGCGCAGACAGGCG
AGTACGTTGACATGTTCGAGGCAGGGATTATCGACCCGACGAAGGTGGTG
CGAACGGCGCTGGTAGACGCCCAGTCGGTGGCGGCGTTGATGATTACGAC
GGAGGCCATGGTGGCGGACCTTCCCaaagacgagggggacgcACCGGCGA
TGCCGGGGATGGGAGGTATGGGAGGCATGGGTGGCATGGGTGGCATGGGC
TTCTAG

Synonyms

Publications