EWM24608.1, cds6063 (CDS) Nannochloropsis gaditana

Overview
NameEWM24608.1
Unique Namecds6063
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:524264..524330 +
Alignment locationCM002467.1:524658..526318 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24608.1
ProductChaperonin Cpn60/TCP-1
Orig transcript idgnl|cribi|Naga_100171g8.2666.mrna
GbkeyCDS
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:524264..524330 +
CM002467.1supercontigCM002467.1:524658..526318 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0042026protein refolding
Vocabulary: Molecular Function
TermDefinition
GO:0000166nucleotide binding
GO:0005524ATP binding
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Vocabulary: INTERPRO
TermDefinition
IPR002423Cpn60/TCP-1
IPR027413GROEL-like_equatorial
IPR027409GroEL-like_apical_dom
IPR001844Chaprnin_Cpn60
Homology
BLAST of EWM24608.1 vs. NCBI_GenBank
Match: gi|585106125|gb|EWM24608.1| (Chaperonin Cpn60/TCP-1 [Nannochloropsis gaditana])

HSP 1 Score: 1144.8 bits (2960), Expect = 0.000e+0
Identity = 575/575 (100.00%), Postives = 575/575 (100.00%), Query Frame = 0
Query:    1 MLRQVLRRAPSRALAMQMRGMAGGKDVRFGVDGRAQMLMGVDKLADAVQVTLGPKGRNAIIDQPFGAPKITKDGVTVAKSIEFKERFVNMGAALVRQVASKTNDVAGDGTTTATVLTRAIFSEGCKAVAAGLNPMDLRRGTQLAVDHVVGVLNQISRAVTSKAEVSQVGTISANGEKVIGDLLADAMERVGKEGVITVQDGKTLHNELEVVEGMKFDRGYISPYFITDNKTQTAELENPYILLVEKKITSIQSLIPLLEMVVKSQRPLLIIAEDVESEALATLVVNKLRAGIKVAAVKAPGFGDNRKATLQDIAVLTGGQVISEDLGLKVENTTEDMLGTSKKVTVSKDDTLILHGNGARDAIDERCLLLKDSIAATASDYEKEKLQERLAKLSGGVAVIKVGGASEVEVNEKKDRVVDALNATRAAVEQGIVPGGGLALLWASKQLEDVKAKVSNMDQRIGVEIIEKALIAPVKSIANNAGVEGAVVVGELMKKDKPELGYNAQTGEYVDMFEAGIIDPTKVVRTALVDAQSVAALMITTEAMVADLPKDEGDAPAMPGMGGMGGMGGMGGMGF 575
            MLRQVLRRAPSRALAMQMRGMAGGKDVRFGVDGRAQMLMGVDKLADAVQVTLGPKGRNAIIDQPFGAPKITKDGVTVAKSIEFKERFVNMGAALVRQVASKTNDVAGDGTTTATVLTRAIFSEGCKAVAAGLNPMDLRRGTQLAVDHVVGVLNQISRAVTSKAEVSQVGTISANGEKVIGDLLADAMERVGKEGVITVQDGKTLHNELEVVEGMKFDRGYISPYFITDNKTQTAELENPYILLVEKKITSIQSLIPLLEMVVKSQRPLLIIAEDVESEALATLVVNKLRAGIKVAAVKAPGFGDNRKATLQDIAVLTGGQVISEDLGLKVENTTEDMLGTSKKVTVSKDDTLILHGNGARDAIDERCLLLKDSIAATASDYEKEKLQERLAKLSGGVAVIKVGGASEVEVNEKKDRVVDALNATRAAVEQGIVPGGGLALLWASKQLEDVKAKVSNMDQRIGVEIIEKALIAPVKSIANNAGVEGAVVVGELMKKDKPELGYNAQTGEYVDMFEAGIIDPTKVVRTALVDAQSVAALMITTEAMVADLPKDEGDAPAMPGMGGMGGMGGMGGMGF
Sbjct:    1 MLRQVLRRAPSRALAMQMRGMAGGKDVRFGVDGRAQMLMGVDKLADAVQVTLGPKGRNAIIDQPFGAPKITKDGVTVAKSIEFKERFVNMGAALVRQVASKTNDVAGDGTTTATVLTRAIFSEGCKAVAAGLNPMDLRRGTQLAVDHVVGVLNQISRAVTSKAEVSQVGTISANGEKVIGDLLADAMERVGKEGVITVQDGKTLHNELEVVEGMKFDRGYISPYFITDNKTQTAELENPYILLVEKKITSIQSLIPLLEMVVKSQRPLLIIAEDVESEALATLVVNKLRAGIKVAAVKAPGFGDNRKATLQDIAVLTGGQVISEDLGLKVENTTEDMLGTSKKVTVSKDDTLILHGNGARDAIDERCLLLKDSIAATASDYEKEKLQERLAKLSGGVAVIKVGGASEVEVNEKKDRVVDALNATRAAVEQGIVPGGGLALLWASKQLEDVKAKVSNMDQRIGVEIIEKALIAPVKSIANNAGVEGAVVVGELMKKDKPELGYNAQTGEYVDMFEAGIIDPTKVVRTALVDAQSVAALMITTEAMVADLPKDEGDAPAMPGMGGMGGMGGMGGMGF 575          
BLAST of EWM24608.1 vs. NCBI_GenBank
Match: gi|585106126|gb|EWM24609.1| (Chaperonin Cpn60/TCP-1 [Nannochloropsis gaditana])

HSP 1 Score: 1099.35 bits (2842), Expect = 0.000e+0
Identity = 553/553 (100.00%), Postives = 553/553 (100.00%), Query Frame = 0
Query:   23 GGKDVRFGVDGRAQMLMGVDKLADAVQVTLGPKGRNAIIDQPFGAPKITKDGVTVAKSIEFKERFVNMGAALVRQVASKTNDVAGDGTTTATVLTRAIFSEGCKAVAAGLNPMDLRRGTQLAVDHVVGVLNQISRAVTSKAEVSQVGTISANGEKVIGDLLADAMERVGKEGVITVQDGKTLHNELEVVEGMKFDRGYISPYFITDNKTQTAELENPYILLVEKKITSIQSLIPLLEMVVKSQRPLLIIAEDVESEALATLVVNKLRAGIKVAAVKAPGFGDNRKATLQDIAVLTGGQVISEDLGLKVENTTEDMLGTSKKVTVSKDDTLILHGNGARDAIDERCLLLKDSIAATASDYEKEKLQERLAKLSGGVAVIKVGGASEVEVNEKKDRVVDALNATRAAVEQGIVPGGGLALLWASKQLEDVKAKVSNMDQRIGVEIIEKALIAPVKSIANNAGVEGAVVVGELMKKDKPELGYNAQTGEYVDMFEAGIIDPTKVVRTALVDAQSVAALMITTEAMVADLPKDEGDAPAMPGMGGMGGMGGMGGMGF 575
            GGKDVRFGVDGRAQMLMGVDKLADAVQVTLGPKGRNAIIDQPFGAPKITKDGVTVAKSIEFKERFVNMGAALVRQVASKTNDVAGDGTTTATVLTRAIFSEGCKAVAAGLNPMDLRRGTQLAVDHVVGVLNQISRAVTSKAEVSQVGTISANGEKVIGDLLADAMERVGKEGVITVQDGKTLHNELEVVEGMKFDRGYISPYFITDNKTQTAELENPYILLVEKKITSIQSLIPLLEMVVKSQRPLLIIAEDVESEALATLVVNKLRAGIKVAAVKAPGFGDNRKATLQDIAVLTGGQVISEDLGLKVENTTEDMLGTSKKVTVSKDDTLILHGNGARDAIDERCLLLKDSIAATASDYEKEKLQERLAKLSGGVAVIKVGGASEVEVNEKKDRVVDALNATRAAVEQGIVPGGGLALLWASKQLEDVKAKVSNMDQRIGVEIIEKALIAPVKSIANNAGVEGAVVVGELMKKDKPELGYNAQTGEYVDMFEAGIIDPTKVVRTALVDAQSVAALMITTEAMVADLPKDEGDAPAMPGMGGMGGMGGMGGMGF
Sbjct:   22 GGKDVRFGVDGRAQMLMGVDKLADAVQVTLGPKGRNAIIDQPFGAPKITKDGVTVAKSIEFKERFVNMGAALVRQVASKTNDVAGDGTTTATVLTRAIFSEGCKAVAAGLNPMDLRRGTQLAVDHVVGVLNQISRAVTSKAEVSQVGTISANGEKVIGDLLADAMERVGKEGVITVQDGKTLHNELEVVEGMKFDRGYISPYFITDNKTQTAELENPYILLVEKKITSIQSLIPLLEMVVKSQRPLLIIAEDVESEALATLVVNKLRAGIKVAAVKAPGFGDNRKATLQDIAVLTGGQVISEDLGLKVENTTEDMLGTSKKVTVSKDDTLILHGNGARDAIDERCLLLKDSIAATASDYEKEKLQERLAKLSGGVAVIKVGGASEVEVNEKKDRVVDALNATRAAVEQGIVPGGGLALLWASKQLEDVKAKVSNMDQRIGVEIIEKALIAPVKSIANNAGVEGAVVVGELMKKDKPELGYNAQTGEYVDMFEAGIIDPTKVVRTALVDAQSVAALMITTEAMVADLPKDEGDAPAMPGMGGMGGMGGMGGMGF 574          
BLAST of EWM24608.1 vs. NCBI_GenBank
Match: gi|298706972|emb|CBJ29791.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 840.106 bits (2169), Expect = 0.000e+0
Identity = 419/556 (75.36%), Postives = 479/556 (86.15%), Query Frame = 0
Query:    2 LRQVLRRAPSRALAMQMRGMAGGKDVRFGVDGRAQMLMGVDKLADAVQVTLGPKGRNAIIDQPFGAPKITKDGVTVAKSIEFKERFVNMGAALVRQVASKTNDVAGDGTTTATVLTRAIFSEGCKAVAAGLNPMDLRRGTQLAVDHVVGVLNQISRAVTSKAEVSQVGTISANGEKVIGDLLADAMERVGKEGVITVQDGKTLHNELEVVEGMKFDRGYISPYFITDNKTQTAELENPYILLVEKKITSIQSLIPLLEMVVKSQRPLLIIAEDVESEALATLVVNKLRAGIKVAAVKAPGFGDNRKATLQDIAVLTGGQVISEDLGLKVENTTEDMLGTSKKVTVSKDDTLILHGNGARDAIDERCLLLKDSIAATASDYEKEKLQERLAKLSGGVAVIKVGGASEVEVNEKKDRVVDALNATRAAVEQGIVPGGGLALLWASKQLEDVKAKVSNMDQRIGVEIIEKALIAPVKSIANNAGVEGAVVVGELMKKDKPELGYNAQTGEYVDMFEAGIIDPTKVVRTALVDAQSVAALMITTEAMVADLPKDEGDAPA 557
            LRQ    A  RA A  +R +A GKDV+FGV+GRA ML GVD LADAVQVT+GPKGR+AI++Q +G P+ITKDGVTVAKSIEFK++F NMGA LVRQVASKTND AGDGTT+ATVLTRAIF EGCKAVAAG+NPMDLR+G +LA DHVV VL+ IS+ +++K EV+QVGTISAN E  IGDL+A AMERVG EGVITVQDGKTL NE+EVVEGMKFDRGYISPYF+TDNKTQ  E+ENP IL+VE+K+++I S+IPLLE  VKSQRPLLI+AEDV+SEALATLVVNKLRAGIKV AVKAPGFGDNRKATLQD+AVLTGGQVISE++GLK+E+ T D  GT K V VSKDD++IL G GARD I+ERC LL++SIA   SDYEKEKL+ERLAKL  GVAVIKVGG+SEVEV EKKDR VDALNATRAAV +GIVPGGG ALLWAS+QLE  KA  +NMDQ+IGVEIIEKAL  PV +IA NAGVEGAVVVGEL+K + P+ G+NA TGEY DM +AGIIDPTKVVRTALVDAQSVAAL++T EAMV DLP++E  APA
Sbjct:    3 LRQASALAARRATAGSVRRLATGKDVKFGVEGRALMLQGVDMLADAVQVTMGPKGRSAILEQTYGVPRITKDGVTVAKSIEFKDKFHNMGAQLVRQVASKTNDAAGDGTTSATVLTRAIFREGCKAVAAGMNPMDLRKGIKLATDHVVNVLSDISKPISTKEEVAQVGTISANSETEIGDLIASAMERVGNEGVITVQDGKTLDNEIEVVEGMKFDRGYISPYFVTDNKTQMCEMENPLILIVERKVSTISSIIPLLEATVKSQRPLLIVAEDVDSEALATLVVNKLRAGIKVCAVKAPGFGDNRKATLQDLAVLTGGQVISEEVGLKLEDATPDHCGTCKLVKVSKDDSIILDGAGARDGIEERCSLLRESIARVKSDYEKEKLEERLAKLHSGVAVIKVGGSSEVEVGEKKDRFVDALNATRAAVSEGIVPGGGSALLWASRQLEATKASCANMDQKIGVEIIEKALRMPVHTIAMNAGVEGAVVVGELLKTEDPQWGHNAATGEYCDMIQAGIIDPTKVVRTALVDAQSVAALLMTAEAMVTDLPEEE--APA 556          
BLAST of EWM24608.1 vs. NCBI_GenBank
Match: gi|669137758|ref|XP_008604447.1| (chaperonin GroL [Saprolegnia diclina VS20] >gi|813126011|ref|XP_012196892.1| chaperonin GroL [Saprolegnia parasitica CBS 223.65] >gi|530743636|gb|EQC41878.1| chaperonin GroL [Saprolegnia diclina VS20] >gi|641538610|gb|KDO32441.1| chaperonin GroL [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 815.068 bits (2104), Expect = 0.000e+0
Identity = 398/557 (71.45%), Postives = 475/557 (85.28%), Query Frame = 0
Query:    1 MLRQVLRRAPSRALAMQMRGMAGGKDVRFGVDGRAQMLMGVDKLADAVQVTLGPKGRNAIIDQPFGAPKITKDGVTVAKSIEFKERFVNMGAALVRQVASKTNDVAGDGTTTATVLTRAIFSEGCKAVAAGLNPMDLRRGTQLAVDHVVGVLNQISRAVTSKAEVSQVGTISANGEKVIGDLLADAMERVGKEGVITVQDGKTLHNELEVVEGMKFDRGYISPYFITDNKTQTAELENPYILLVEKKITSIQSLIPLLEMVVKSQRPLLIIAEDVESEALATLVVNKLRAGIKVAAVKAPGFGDNRKATLQDIAVLTGGQVISEDLGLKVENTTEDMLGTSKKVTVSKDDTLILHGNGARDAIDERCLLLKDSIAATASDYEKEKLQERLAKLSGGVAVIKVGGASEVEVNEKKDRVVDALNATRAAVEQGIVPGGGLALLWASKQLEDVKAKVSNMDQRIGVEIIEKALIAPVKSIANNAGVEGAVVVGELMKKDKPELGYNAQTGEYVDMFEAGIIDPTKVVRTALVDAQSVAALMITTEAMVADLPKDEGDAPA 557
            ML + + RA S+      R  + GKD+RFGV+GRA ML G D+LADAVQVTLGPKGRN +IDQ +GAPKITKDGVTVAK+IEFK++F NMGA L+RQVA+ TND AGDGTT+ATVLTRAI+SEGCK+VAAG+NP DLRRG Q+AVD VV  L  +S+ +  K +V+QV TISAN EK IGDL++DAMERVG+EGVITVQDGKTL+NELEVVEGMKFDRGYISPYF+T+ KTQ  ELENPYILLVEKK++S  ++ PLLE V K  RPLLIIAEDVESEALA L++N++RAGIKV AVKAPGFGDNRKA LQD+AVLTG +V+SED+G++++N T D+LG +KK+T++KDDTLILHG G+++AI+ERCLLLKDSIA+T SDYEKEKLQERLAKL GG+AVIKVGGASEVEV EKKDRVVDALNATRAAVE+GIVPGGG ALLW+S++L  +  K +NMDQ++GV+IIE+A  A V  IA NAG EGAV+VG+L+++  P  G+NAQT EYVDM EAGIIDPTKVVRT LVDA SVA+LM+T EA++ADLP  EG APA
Sbjct:    1 MLSKQMSRAASK------RFFSSGKDIRFGVEGRALMLKGADQLADAVQVTLGPKGRNVVIDQAYGAPKITKDGVTVAKNIEFKDKFENMGAQLLRQVANNTNDAAGDGTTSATVLTRAIYSEGCKSVAAGMNPQDLRRGIQMAVDFVVAELATLSQDIDDKEKVAQVATISANSEKEIGDLISDAMERVGREGVITVQDGKTLYNELEVVEGMKFDRGYISPYFVTNTKTQACELENPYILLVEKKVSSAAAIAPLLEFVYKQSRPLLIIAEDVESEALAALILNRIRAGIKVCAVKAPGFGDNRKAGLQDMAVLTGAKVVSEDVGIRLDNATPDLLGCAKKITITKDDTLILHGEGSKEAIEERCLLLKDSIASTTSDYEKEKLQERLAKLGGGIAVIKVGGASEVEVGEKKDRVVDALNATRAAVEEGIVPGGGTALLWSSRKLPSLYEKCANMDQKVGVQIIERACRATVTQIAKNAGEEGAVIVGKLLEQSSPTFGFNAQTSEYVDMVEAGIIDPTKVVRTGLVDASSVASLMMTAEALIADLPA-EGGAPA 550          
BLAST of EWM24608.1 vs. NCBI_GenBank
Match: gi|673016240|ref|XP_008862081.1| (chaperonin GroL [Aphanomyces invadans] >gi|574481284|gb|ETW08276.1| chaperonin GroL [Aphanomyces invadans])

HSP 1 Score: 812.372 bits (2097), Expect = 0.000e+0
Identity = 399/552 (72.28%), Postives = 476/552 (86.23%), Query Frame = 0
Query:    7 RRAPSR-ALAMQMRGMAGGKDVRFGVDGRAQMLMGVDKLADAVQVTLGPKGRNAIIDQPFGAPKITKDGVTVAKSIEFKERFVNMGAALVRQVASKTNDVAGDGTTTATVLTRAIFSEGCKAVAAGLNPMDLRRGTQLAVDHVVGVLNQISRAVTSKAEVSQVGTISANGEKVIGDLLADAMERVGKEGVITVQDGKTLHNELEVVEGMKFDRGYISPYFITDNKTQTAELENPYILLVEKKITSIQSLIPLLEMVVKSQRPLLIIAEDVESEALATLVVNKLRAGIKVAAVKAPGFGDNRKATLQDIAVLTGGQVISEDLGLKVENTTEDMLGTSKKVTVSKDDTLILHGNGARDAIDERCLLLKDSIAATASDYEKEKLQERLAKLSGGVAVIKVGGASEVEVNEKKDRVVDALNATRAAVEQGIVPGGGLALLWASKQLEDVKAKVSNMDQRIGVEIIEKALIAPVKSIANNAGVEGAVVVGELMKKDKPELGYNAQTGEYVDMFEAGIIDPTKVVRTALVDAQSVAALMITTEAMVADLPKDEGDAPA 557
            ++ P++ A  M  R  A GKD+RFGV+GRA ML G D+LADAVQVTLGPKGRN +IDQ +GAPKITKDGVTVAK+IEF+++F NMGA L+RQVA+ TND AGDGTT+ATVLTRAI+SEGCK+VAAG+NP DLRRG QLAVDHVV  L ++S+ +  K +V+QV TISAN EK IGDL++DAMERVG+EGVITVQDGKTL+NELEVVEGMKFDRGYISPYF+T++K Q  ELENPYILLVEKK++S Q + P+LE V K+QRPLLIIAEDVESEALA L++N++RAGIKV AVKAPGFGDNRKA LQD+AVLTG +VISED+GL+++N T D+LGT+KKVT++KDDTLIL G GA+DAI ER  LLKDSIA + SDYEKEKLQERLAKL GG+AVIKVGGASEVEV EKKDRVVDALNATRAAVE+GIVPGGG ALLWAS+ L+ +   V+NMDQ++G++IIE+A  + V  IA NAG EGAV+VG+L+++D P  G+NAQTG+YVDM EAGIIDPTKVVRT LVDA SVA+LM+T EA++ADLP  E +APA
Sbjct:    4 KQVPTQMARTMSKRFFASGKDIRFGVEGRALMLKGADQLADAVQVTLGPKGRNVVIDQAYGAPKITKDGVTVAKNIEFRDKFENMGAQLLRQVANNTNDAAGDGTTSATVLTRAIYSEGCKSVAAGMNPQDLRRGIQLAVDHVVSELAKLSQDIDDKEKVAQVATISANSEKEIGDLISDAMERVGREGVITVQDGKTLYNELEVVEGMKFDRGYISPYFVTNSKNQACELENPYILLVEKKVSSAQGIAPMLEFVYKAQRPLLIIAEDVESEALAALILNRIRAGIKVCAVKAPGFGDNRKAGLQDMAVLTGAKVISEDVGLRLDNATPDILGTAKKVTITKDDTLILDGEGAKDAIAERVELLKDSIAQSTSDYEKEKLQERLAKLGGGIAVIKVGGASEVEVGEKKDRVVDALNATRAAVEEGIVPGGGTALLWASRNLKSLYDGVANMDQKVGIQIIERACRSTVTQIAKNAGEEGAVIVGKLLEQDSPTFGFNAQTGQYVDMVEAGIIDPTKVVRTGLVDASSVASLMMTAEALIADLP--EENAPA 553          
BLAST of EWM24608.1 vs. NCBI_GenBank
Match: gi|673016236|ref|XP_008862079.1| (chaperonin GroL [Aphanomyces invadans] >gi|574481282|gb|ETW08274.1| chaperonin GroL [Aphanomyces invadans])

HSP 1 Score: 811.601 bits (2095), Expect = 0.000e+0
Identity = 399/552 (72.28%), Postives = 476/552 (86.23%), Query Frame = 0
Query:    7 RRAPSR-ALAMQMRGMAGGKDVRFGVDGRAQMLMGVDKLADAVQVTLGPKGRNAIIDQPFGAPKITKDGVTVAKSIEFKERFVNMGAALVRQVASKTNDVAGDGTTTATVLTRAIFSEGCKAVAAGLNPMDLRRGTQLAVDHVVGVLNQISRAVTSKAEVSQVGTISANGEKVIGDLLADAMERVGKEGVITVQDGKTLHNELEVVEGMKFDRGYISPYFITDNKTQTAELENPYILLVEKKITSIQSLIPLLEMVVKSQRPLLIIAEDVESEALATLVVNKLRAGIKVAAVKAPGFGDNRKATLQDIAVLTGGQVISEDLGLKVENTTEDMLGTSKKVTVSKDDTLILHGNGARDAIDERCLLLKDSIAATASDYEKEKLQERLAKLSGGVAVIKVGGASEVEVNEKKDRVVDALNATRAAVEQGIVPGGGLALLWASKQLEDVKAKVSNMDQRIGVEIIEKALIAPVKSIANNAGVEGAVVVGELMKKDKPELGYNAQTGEYVDMFEAGIIDPTKVVRTALVDAQSVAALMITTEAMVADLPKDEGDAPA 557
            ++ P++ A  M  R  A GKD+RFGV+GRA ML G D+LADAVQVTLGPKGRN +IDQ +GAPKITKDGVTVAK+IEF+++F NMGA L+RQVA+ TND AGDGTT+ATVLTRAI+SEGCK+VAAG+NP DLRRG QLAVDHVV  L ++S+ +  K +V+QV TISAN EK IGDL++DAMERVG+EGVITVQDGKTL+NELEVVEGMKFDRGYISPYF+T++K Q  ELENPYILLVEKK++S Q + P+LE V K+QRPLLIIAEDVESEALA L++N++RAGIKV AVKAPGFGDNRKA LQD+AVLTG +VISED+GL+++N T D+LGT+KKVT++KDDTLIL G GA+DAI ER  LLKDSIA + SDYEKEKLQERLAKL GG+AVIKVGGASEVEV EKKDRVVDALNATRAAVE+GIVPGGG ALLWAS+ L+ +   V+NMDQ++G++IIE+A  + V  IA NAG EGAV+VG+L+++D P  G+NAQTG+YVDM EAGIIDPTKVVRT LVDA SVA+LM+T EA++ADLP  E +APA
Sbjct:   23 KQVPTQMARTMSKRFFASGKDIRFGVEGRALMLKGADQLADAVQVTLGPKGRNVVIDQAYGAPKITKDGVTVAKNIEFRDKFENMGAQLLRQVANNTNDAAGDGTTSATVLTRAIYSEGCKSVAAGMNPQDLRRGIQLAVDHVVSELAKLSQDIDDKEKVAQVATISANSEKEIGDLISDAMERVGREGVITVQDGKTLYNELEVVEGMKFDRGYISPYFVTNSKNQACELENPYILLVEKKVSSAQGIAPMLEFVYKAQRPLLIIAEDVESEALAALILNRIRAGIKVCAVKAPGFGDNRKAGLQDMAVLTGAKVISEDVGLRLDNATPDILGTAKKVTITKDDTLILDGEGAKDAIAERVELLKDSIAQSTSDYEKEKLQERLAKLGGGIAVIKVGGASEVEVGEKKDRVVDALNATRAAVEEGIVPGGGTALLWASRNLKSLYDGVANMDQKVGIQIIERACRSTVTQIAKNAGEEGAVIVGKLLEQDSPTFGFNAQTGQYVDMVEAGIIDPTKVVRTGLVDASSVASLMMTAEALIADLP--EENAPA 572          
BLAST of EWM24608.1 vs. NCBI_GenBank
Match: gi|698819759|ref|XP_009842908.1| (chaperonin GroL [Aphanomyces astaci] >gi|574102095|gb|ETV67651.1| chaperonin GroL [Aphanomyces astaci])

HSP 1 Score: 810.831 bits (2093), Expect = 0.000e+0
Identity = 397/545 (72.84%), Postives = 472/545 (86.61%), Query Frame = 0
Query:   13 ALAMQMRGMAGGKDVRFGVDGRAQMLMGVDKLADAVQVTLGPKGRNAIIDQPFGAPKITKDGVTVAKSIEFKERFVNMGAALVRQVASKTNDVAGDGTTTATVLTRAIFSEGCKAVAAGLNPMDLRRGTQLAVDHVVGVLNQISRAVTSKAEVSQVGTISANGEKVIGDLLADAMERVGKEGVITVQDGKTLHNELEVVEGMKFDRGYISPYFITDNKTQTAELENPYILLVEKKITSIQSLIPLLEMVVKSQRPLLIIAEDVESEALATLVVNKLRAGIKVAAVKAPGFGDNRKATLQDIAVLTGGQVISEDLGLKVENTTEDMLGTSKKVTVSKDDTLILHGNGARDAIDERCLLLKDSIAATASDYEKEKLQERLAKLSGGVAVIKVGGASEVEVNEKKDRVVDALNATRAAVEQGIVPGGGLALLWASKQLEDVKAKVSNMDQRIGVEIIEKALIAPVKSIANNAGVEGAVVVGELMKKDKPELGYNAQTGEYVDMFEAGIIDPTKVVRTALVDAQSVAALMITTEAMVADLPKDEGDAPA 557
            A ++  R  A GKD+RFGV+GRA ML G D+LADAVQVTLGPKGRN +IDQ +GAPKITKDGVTVAK+IEF+++F NMGA L+RQVA+ TND AGDGTT+ATVLTRAI+SEGCK+VAAG+NP DLRRG QLAVDHVV  L ++S+ +  K +V+QV TISAN EK IGDL++DAMERVG+EGVITVQDGKTL+NELEVVEGMKFDRGYISPYF+T++KTQ+ ELENPYILLVEKK++S Q + P+LE V K+QRPLLIIAEDVESEALA L++N++RAGIKV AVKAPGFGDNRKA LQD+AVLTG +VISED+GL+++N T D+LGT+KKVT++KDDTLIL G G +DAI ER  LLKDSIA + SDYEKEKLQERLAKL GG+AVIKVGGASEVEV EKKDRVVDALNATRAAVE+GIVPGGG ALLWAS+ L+ +   V+NMDQ++G++IIE+A  + V  IA NAG EGAV+VG+L+++  P  G+NAQTGEYVDM EAGIIDPTKVVRT LVDA SVA+LM+T EA++ADLP  E +APA
Sbjct:   11 ARSVSKRFFASGKDIRFGVEGRALMLKGADQLADAVQVTLGPKGRNVVIDQAYGAPKITKDGVTVAKNIEFRDKFENMGAQLLRQVANNTNDAAGDGTTSATVLTRAIYSEGCKSVAAGMNPQDLRRGIQLAVDHVVAELAKLSQDIDDKEKVAQVATISANSEKEIGDLISDAMERVGREGVITVQDGKTLYNELEVVEGMKFDRGYISPYFVTNSKTQSCELENPYILLVEKKVSSAQGIAPMLEFVYKAQRPLLIIAEDVESEALAALILNRIRAGIKVCAVKAPGFGDNRKAGLQDMAVLTGAKVISEDVGLRLDNATPDILGTAKKVTITKDDTLILDGEGPKDAIAERVELLKDSIAGSTSDYEKEKLQERLAKLGGGIAVIKVGGASEVEVGEKKDRVVDALNATRAAVEEGIVPGGGSALLWASRNLKSLYGNVANMDQKVGIQIIERACRSTVTQIAKNAGEEGAVIVGKLLEQSSPTFGFNAQTGEYVDMVEAGIIDPTKVVRTGLVDASSVASLMMTAEALIADLP--EENAPA 553          
BLAST of EWM24608.1 vs. NCBI_GenBank
Match: gi|1173946073|gb|OQR94639.1| (chaperonin CPN60-1, mitochondrial precursor [Achlya hypogyna])

HSP 1 Score: 804.668 bits (2077), Expect = 0.000e+0
Identity = 390/549 (71.04%), Postives = 471/549 (85.79%), Query Frame = 0
Query:    1 MLRQVLRRAPSRALAMQMRGMAGGKDVRFGVDGRAQMLMGVDKLADAVQVTLGPKGRNAIIDQPFGAPKITKDGVTVAKSIEFKERFVNMGAALVRQVASKTNDVAGDGTTTATVLTRAIFSEGCKAVAAGLNPMDLRRGTQLAVDHVVGVLNQISRAVTSKAEVSQVGTISANGEKVIGDLLADAMERVGKEGVITVQDGKTLHNELEVVEGMKFDRGYISPYFITDNKTQTAELENPYILLVEKKITSIQSLIPLLEMVVKSQRPLLIIAEDVESEALATLVVNKLRAGIKVAAVKAPGFGDNRKATLQDIAVLTGGQVISEDLGLKVENTTEDMLGTSKKVTVSKDDTLILHGNGARDAIDERCLLLKDSIAATASDYEKEKLQERLAKLSGGVAVIKVGGASEVEVNEKKDRVVDALNATRAAVEQGIVPGGGLALLWASKQLEDVKAKVSNMDQRIGVEIIEKALIAPVKSIANNAGVEGAVVVGELMKKDKPELGYNAQTGEYVDMFEAGIIDPTKVVRTALVDAQSVAALMITTEAMVADLP 549
            ML + + RA S+      R  + GK++RFGV+GRA ML G D+LADAVQVTLGPKGRN +IDQ +GAPKITKDGVTVAK+IEFK++F NMGA L+RQVA+ TND AGDGTT+ATVLTRAI+SEGCK+VAAG+NP DLRRG Q+AVDHVVG L ++S+ +  K +V+QV TISAN EK IGDL++DAMERVG+EGVITVQDGKTL+NELEVVEGMKFDRGYISPYF+T++KTQ  EL+NPYILLVEKK++S  S+ PLLE V K  RPLLIIAED+ESEALA L++N++RAGIKV AVKAPGFGDNRKA LQD+AVLTG +V+SED+G++++N T D+LG +KK+TV+KDDTLIL G G+++AI+ERCLLLKDSIA+T SDYEKEKLQERLAKL GG+AVIKVGGASEVEV EKKDRVVDALNATRAAVE+GIVPGGG ALLW+S+ L  +  K  NMDQ++GV+IIE+A  A V  IA NAG EGAV+VG+L+++  P  G+NAQT ++VDM +AGIIDPTKVVRT LVDA SVA+LM+T EA++ADLP
Sbjct:    1 MLSKQVSRAASK------RFFSSGKEIRFGVEGRALMLKGADQLADAVQVTLGPKGRNVVIDQAYGAPKITKDGVTVAKNIEFKDKFENMGAQLLRQVANNTNDAAGDGTTSATVLTRAIYSEGCKSVAAGMNPQDLRRGIQMAVDHVVGELAKLSQDIDDKEKVAQVATISANSEKEIGDLISDAMERVGREGVITVQDGKTLYNELEVVEGMKFDRGYISPYFVTNSKTQACELDNPYILLVEKKVSSAASIAPLLEFVYKQSRPLLIIAEDIESEALAALILNRIRAGIKVCAVKAPGFGDNRKAGLQDMAVLTGAKVVSEDVGIRLDNATPDLLGCAKKITVTKDDTLILDGEGSKEAIEERCLLLKDSIASTTSDYEKEKLQERLAKLGGGIAVIKVGGASEVEVGEKKDRVVDALNATRAAVEEGIVPGGGTALLWSSRTLPSLYEKCVNMDQKVGVQIIERACRATVTQIAKNAGEEGAVIVGKLLEQTSPTFGFNAQTSQFVDMVDAGIIDPTKVVRTGLVDASSVASLMMTAEALIADLP 543          
BLAST of EWM24608.1 vs. NCBI_GenBank
Match: gi|635365552|emb|CCI46088.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 804.283 bits (2076), Expect = 0.000e+0
Identity = 389/555 (70.09%), Postives = 475/555 (85.59%), Query Frame = 0
Query:    2 LRQVLRRAPSRALAMQMRGMAGGKDVRFGVDGRAQMLMGVDKLADAVQVTLGPKGRNAIIDQPFGAPKITKDGVTVAKSIEFKERFVNMGAALVRQVASKTNDVAGDGTTTATVLTRAIFSEGCKAVAAGLNPMDLRRGTQLAVDHVVGVLNQISRAVTSKAEVSQVGTISANGEKVIGDLLADAMERVGKEGVITVQDGKTLHNELEVVEGMKFDRGYISPYFITDNKTQTAELENPYILLVEKKITSIQSLIPLLEMVVKSQRPLLIIAEDVESEALATLVVNKLRAGIKVAAVKAPGFGDNRKATLQDIAVLTGGQVISEDLGLKVENTTEDMLGTSKKVTVSKDDTLILHGNGARDAIDERCLLLKDSIAATASDYEKEKLQERLAKLSGGVAVIKVGGASEVEVNEKKDRVVDALNATRAAVEQGIVPGGGLALLWASKQLEDVKAKVSNMDQRIGVEIIEKALIAPVKSIANNAGVEGAVVVGELMKKDKPELGYNAQTGEYVDMFEAGIIDPTKVVRTALVDAQSVAALMITTEAMVADLPKDEGDAP 556
            +++ L +  +RA+A   R  A GKD+RFGV+GRA ML G D+L +AV+VT+GPKGRN +IDQ +GAPKITKDGVTVAK+I+FK++F NMGA L+RQVA+ TND AGDGTT+ATVLTRAI+SEGCKAVAAG+NP DLRRG +LAVDHVV  L +IS+ V  K +++QV TISAN EK +G+L+++AMERVGKEGVITVQDGKTL+NELEVVEGMKFDRGYISPYF+TDNK Q+ ELENP+ILLVEKK++++QS++P+LE VVK QRPLLIIAEDVESEALA LV+NK+R G+KV AVKAPGFGDNRKA+LQD+AV+TG  VISE+LG ++E T+ DMLGT+KKVT++KDDTL+L G G  ++++ERC LL+ SI +T SDYEKEKLQERLAKLSGGVAVIKVGGASEVEVNEKKDRVVDALNATRAAV +GIVPGGG ALLW+S+ L  +  K  N+DQ++GV+IIE+A  APV  IA NAG EGAVVVG+L++  +   G+NAQT EYVDM +AGIIDPTKV+RT L+DA SVA+LM+T EA++ADLP D  DAP
Sbjct:    9 IKKSLMQHATRAVAR--RSFASGKDIRFGVEGRALMLKGADQLTNAVEVTMGPKGRNVVIDQSYGAPKITKDGVTVAKNIDFKDKFENMGAQLLRQVANNTNDAAGDGTTSATVLTRAIYSEGCKAVAAGMNPTDLRRGIKLAVDHVVEELQKISQDVADKQKIAQVATISANSEKEVGNLISEAMERVGKEGVITVQDGKTLYNELEVVEGMKFDRGYISPYFVTDNKNQSCELENPFILLVEKKVSTLQSILPVLETVVKQQRPLLIIAEDVESEALAALVINKIRGGVKVCAVKAPGFGDNRKASLQDMAVMTGATVISEELGHRLETTSVDMLGTAKKVTITKDDTLMLDGAGTPESVEERCDLLRGSIDSTTSDYEKEKLQERLAKLSGGVAVIKVGGASEVEVNEKKDRVVDALNATRAAVAEGIVPGGGSALLWSSRSLPSLYDKCENLDQKVGVQIIERACRAPVTQIAKNAGEEGAVVVGKLLEGKEASFGFNAQTSEYVDMVQAGIIDPTKVIRTGLLDASSVASLMMTAEALIADLPSDASDAP 561          
BLAST of EWM24608.1 vs. NCBI_GenBank
Match: gi|325186322|emb|CCA20827.1| (mitochondriatargeted chaperonin putative [Albugo laibachii Nc14])

HSP 1 Score: 804.283 bits (2076), Expect = 0.000e+0
Identity = 388/555 (69.91%), Postives = 475/555 (85.59%), Query Frame = 0
Query:    2 LRQVLRRAPSRALAMQMRGMAGGKDVRFGVDGRAQMLMGVDKLADAVQVTLGPKGRNAIIDQPFGAPKITKDGVTVAKSIEFKERFVNMGAALVRQVASKTNDVAGDGTTTATVLTRAIFSEGCKAVAAGLNPMDLRRGTQLAVDHVVGVLNQISRAVTSKAEVSQVGTISANGEKVIGDLLADAMERVGKEGVITVQDGKTLHNELEVVEGMKFDRGYISPYFITDNKTQTAELENPYILLVEKKITSIQSLIPLLEMVVKSQRPLLIIAEDVESEALATLVVNKLRAGIKVAAVKAPGFGDNRKATLQDIAVLTGGQVISEDLGLKVENTTEDMLGTSKKVTVSKDDTLILHGNGARDAIDERCLLLKDSIAATASDYEKEKLQERLAKLSGGVAVIKVGGASEVEVNEKKDRVVDALNATRAAVEQGIVPGGGLALLWASKQLEDVKAKVSNMDQRIGVEIIEKALIAPVKSIANNAGVEGAVVVGELMKKDKPELGYNAQTGEYVDMFEAGIIDPTKVVRTALVDAQSVAALMITTEAMVADLPKDEGDAP 556
            +++ L +  +RA+A   R  A GKD+RFGV+GRA ML G D+L +AV+VT+GPKGRN +IDQ FGAPKITKDGVTVAK+I+FK++F NMGA L+RQVA+ TND AGDGTT+ATVLTRAI+SEGCKAVAAG+NP DLRRG +LAVDHVV  L +IS+ V  K +++QV TISAN EK +G+L+++AMERVGKEGVITVQDGKTL+NELEVVEGMKFDRGYISPYF+TDNK QT ELENP+ILLVEKK++++QS++P+LE VVK QRPLLIIAEDVESEALA LV+NK+R G+KV AVKAPGFGDNRKA+LQD+AV+TG  V+SE+LG ++E T+ DMLGT+KKVT++KDDTL+L G G+ ++++ERC LL+ +I +T S+YEKEKLQERLAKLSGGVAVIKVGGASEVEVNEKKDRVVDALNATRAAV +GIVPGGG ALLW+S+ L  +  K  N+DQ++GV+IIE+A  APV  IA NAG EGAV+VG+L++      G+NAQT EYVDM +AGIIDPTKVVRT L+DA SVA+LM+T EA++ADLP D  DAP
Sbjct:    9 MKKSLMQHATRAVAR--RSFASGKDIRFGVEGRALMLKGADQLTNAVEVTMGPKGRNVVIDQSFGAPKITKDGVTVAKNIDFKDKFENMGAQLLRQVANNTNDAAGDGTTSATVLTRAIYSEGCKAVAAGMNPTDLRRGIKLAVDHVVEELQKISQDVADKQKIAQVATISANSEKEVGNLISEAMERVGKEGVITVQDGKTLYNELEVVEGMKFDRGYISPYFVTDNKNQTCELENPFILLVEKKVSTLQSILPVLETVVKQQRPLLIIAEDVESEALAALVINKIRGGVKVCAVKAPGFGDNRKASLQDMAVMTGATVVSEELGHRLETTSVDMLGTAKKVTITKDDTLMLDGAGSPESVEERCDLLRGTIESTTSEYEKEKLQERLAKLSGGVAVIKVGGASEVEVNEKKDRVVDALNATRAAVAEGIVPGGGSALLWSSRSLPSLYEKCENLDQKVGVQIIERACKAPVTQIAKNAGEEGAVIVGKLLESSDSSFGFNAQTSEYVDMVQAGIIDPTKVVRTGLLDASSVASLMMTAEALIADLPADGNDAP 561          
The following BLAST results are available for this feature:
BLAST of EWM24608.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106125|gb|EWM24608.1|0.000e+0100.00Chaperonin Cpn60/TCP-1 [Nannochloropsis gaditana][more]
gi|585106126|gb|EWM24609.1|0.000e+0100.00Chaperonin Cpn60/TCP-1 [Nannochloropsis gaditana][more]
gi|298706972|emb|CBJ29791.1|0.000e+075.36conserved unknown protein [Ectocarpus siliculosus][more]
gi|669137758|ref|XP_008604447.1|0.000e+071.45chaperonin GroL [Saprolegnia diclina VS20] >gi|813... [more]
gi|673016240|ref|XP_008862081.1|0.000e+072.28chaperonin GroL [Aphanomyces invadans] >gi|5744812... [more]
gi|673016236|ref|XP_008862079.1|0.000e+072.28chaperonin GroL [Aphanomyces invadans] >gi|5744812... [more]
gi|698819759|ref|XP_009842908.1|0.000e+072.84chaperonin GroL [Aphanomyces astaci] >gi|574102095... [more]
gi|1173946073|gb|OQR94639.1|0.000e+071.04chaperonin CPN60-1, mitochondrial precursor [Achly... [more]
gi|635365552|emb|CCI46088.1|0.000e+070.09unnamed protein product [Albugo candida][more]
gi|325186322|emb|CCA20827.1|0.000e+069.91mitochondriatargeted chaperonin putative [Albugo l... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6078rna6078Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications