SHMT2, gene1472 (gene) Nannochloropsis gaditana

Overview
NameSHMT2
Unique Namegene1472
Typegene
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:866595..869194 -

Link to JBrowse

Properties
Property NameValue
Locus tagNaga_100007g45
Gene biotypeprotein_coding
GeneSHMT2
GbkeyGene
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:866595..869194 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
SRP2295572021-06-30
GO annotation for N. gaditana B312020-04-08
PRJNA1747702019-07-03
PXD0084992019-07-03
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0009056catabolic process
GO:0042221response to chemical
GO:0009058biosynthetic process
GO:0009987cellular process
GO:0009719response to endogenous stimulus
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0016740transferase activity
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ngnoL091ngnoL091Nannochloropsis gaditana (N. gaditana B-31)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G02190NO01G02190Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
rna1528rna1528-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide
rna1527rna1527-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
rna1528rna1528Nannochloropsis gaditana (N. gaditana B-31)mRNA
rna1527rna1527Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of rna1528

>rna1528-protein ID=rna1528-protein|Name=rna1528|organism=Nannochloropsis gaditana|type=polypeptide|length=486bp
MAGSAGVKCVVMTHRISFPTGTTSAHSLSSSTTMSLAQNKSLKEHDPVLY
DLIQQEKNRQATSLELIASENFTSAAVMECLGSVLTNKYAEGLPGARYYG
GNEVVDQVENLCRDRALQAYRLDPEKWGVNVQPYSGSPANFAVYTALLRP
HDRIMGLDLPSGGHLTHGFYTYNKAEGTRKAVSATSIYFESLPYRVHPDT
GLIDYDQMEVNAALFKPAMIISGGSAYPREWDYARIRAIADANGSLMMVD
MAHISGLVAAQEAANPFEYADVVTTTTHKSLRGPRAGLIFFRKDDRNFEG
RINQAVFPALQGGPHEHQIAGVATQLKEVMTPEFKEYAIQVKKNAQAIGK
ALMAKGYKMATGGTVNHLVLWDLRPQGLTGSKMEKLCDVLNITLNKNAVV
GDRSALTPGGVRIGAPALTSRGFKEADFEQVADFLDRALKIGLRVQAASG
PKLVDFAKAVADDAEVKALKAEVNAFAKGFPMPGIV
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protein sequence of rna1527

>rna1527-protein ID=rna1527-protein|Name=rna1527|organism=Nannochloropsis gaditana|type=polypeptide|length=470bp
MAPDGTTSAHSLSSSTTMSLAQNKSLKEHDPVLYDLIQQEKNRQATSLEL
IASENFTSAAVMECLGSVLTNKYAEGLPGARYYGGNEVVDQVENLCRDRA
LQAYRLDPEKWGVNVQPYSGSPANFAVYTALLRPHDRIMGLDLPSGGHLT
HGFYTYNKAEGTRKAVSATSIYFESLPYRVHPDTGLIDYDQMEVNAALFK
PAMIISGGSAYPREWDYARIRAIADANGSLMMVDMAHISGLVAAQEAANP
FEYADVVTTTTHKSLRGPRAGLIFFRKDDRNFEGRINQAVFPALQGGPHE
HQIAGVATQLKEVMTPEFKEYAIQVKKNAQAIGKALMAKGYKMATGGTVN
HLVLWDLRPQGLTGSKMEKLCDVLNITLNKNAVVGDRSALTPGGVRIGAP
ALTSRGFKEADFEQVADFLDRALKIGLRVQAASGPKLVDFAKAVADDAEV
KALKAEVNAFAKGFPMPGIV
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Synonyms
Publications