NO01G02190, NO01G02190 (gene) Nannochloropsis oceanica

Overview
NameNO01G02190
Unique NameNO01G02190
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1783
Alignment locationchr1:556394..558176 +

Link to JBrowse

Properties
Property NameValue
DescriptionSerine hydroxymethyltransferase
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:556394..558176 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR015424PyrdxlP-dep_Trfase
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0005488binding
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0009058biosynthetic process
Homology
BLAST of NO01G02190 vs. NCBI_GenBank
Match: EWM29153.1 (serine hydroxymethyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 864.8 bits (2233), Expect = 1.200e-247
Identity = 423/453 (93.38%), Postives = 440/453 (97.13%), Query Frame = 0
Query:    1 MSLAQNKPLKEHDPVLYELIQKEKNRQLTSLELIASENFTSGAVMECLGSVLTNKYAEGLPGARYYGGNEVVDQVENLCRDRALQAYRLDPEKWGVNVQPYSGSPANFAVYTALLRPHDRIMGLDLPSGGHLTHGFYTYNKAEGTRKAVSATSIYFESLPYRVHPDTGLIDYDQMETNAALFKPAMIISGGSAYPREWDYARIRSIADANGSLMMVDMAHISGLVATQEAADPFEFADVVTTTTHKSLRGPRAGLIFFRKDDRNFEGRINQAVFPALQGGPHEHQIAGVATQLKEVMSPEFKEYAIQVKKNAQAIAKALTAKGYKMATGGTVNHLVLWDLRPQALTGSKMERLCDVLNITLNKNAVVGDRSALTPGGVRIGAPALTSRGFKEADFEKVADFLDQAVKIGLRIQAASGPKLVDFTQALGEDEEVKSLKLQVNEFAKGFPMPGLV 454
            MSLAQNK LKEHDPVLY+LIQ+EKNRQ TSLELIASENFTS AVMECLGSVLTNKYAEGLPGARYYGGNEVVDQVENLCRDRALQAYRLDPEKWGVNVQPYSGSPANFAVYTALLRPHDRIMGLDLPSGGHLTHGFYTYNKAEGTRKAVSATSIYFESLPYRVHPDTGLIDYDQME NAALFKPAMIISGGSAYPREWDYARIR+IADANGSLMMVDMAHISGLVA QEAA+PFE+ADVVTTTTHKSLRGPRAGLIFFRKDDRNFEGRINQAVFPALQGGPHEHQIAGVATQLKEVM+PEFKEYAIQVKKNAQAI KAL AKGYKMATGGTVNHLVLWDLRPQ LTGSKME+LCDVLNITLNKNAVVGDRSALTPGGVRIGAPALTSRGFKEADFE+VADFLD+A+KIGLR+QAASGPKLVDF +A+ +D EVK+LK +VN FAKGFPMPG+V
Sbjct:   18 MSLAQNKSLKEHDPVLYDLIQQEKNRQATSLELIASENFTSAAVMECLGSVLTNKYAEGLPGARYYGGNEVVDQVENLCRDRALQAYRLDPEKWGVNVQPYSGSPANFAVYTALLRPHDRIMGLDLPSGGHLTHGFYTYNKAEGTRKAVSATSIYFESLPYRVHPDTGLIDYDQMEVNAALFKPAMIISGGSAYPREWDYARIRAIADANGSLMMVDMAHISGLVAAQEAANPFEYADVVTTTTHKSLRGPRAGLIFFRKDDRNFEGRINQAVFPALQGGPHEHQIAGVATQLKEVMTPEFKEYAIQVKKNAQAIGKALMAKGYKMATGGTVNHLVLWDLRPQGLTGSKMEKLCDVLNITLNKNAVVGDRSALTPGGVRIGAPALTSRGFKEADFEQVADFLDRALKIGLRVQAASGPKLVDFAKAVADDAEVKALKAEVNAFAKGFPMPGIV 470          
BLAST of NO01G02190 vs. NCBI_GenBank
Match: EWM29154.1 (serine hydroxymethyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 864.8 bits (2233), Expect = 1.200e-247
Identity = 423/453 (93.38%), Postives = 440/453 (97.13%), Query Frame = 0
Query:    1 MSLAQNKPLKEHDPVLYELIQKEKNRQLTSLELIASENFTSGAVMECLGSVLTNKYAEGLPGARYYGGNEVVDQVENLCRDRALQAYRLDPEKWGVNVQPYSGSPANFAVYTALLRPHDRIMGLDLPSGGHLTHGFYTYNKAEGTRKAVSATSIYFESLPYRVHPDTGLIDYDQMETNAALFKPAMIISGGSAYPREWDYARIRSIADANGSLMMVDMAHISGLVATQEAADPFEFADVVTTTTHKSLRGPRAGLIFFRKDDRNFEGRINQAVFPALQGGPHEHQIAGVATQLKEVMSPEFKEYAIQVKKNAQAIAKALTAKGYKMATGGTVNHLVLWDLRPQALTGSKMERLCDVLNITLNKNAVVGDRSALTPGGVRIGAPALTSRGFKEADFEKVADFLDQAVKIGLRIQAASGPKLVDFTQALGEDEEVKSLKLQVNEFAKGFPMPGLV 454
            MSLAQNK LKEHDPVLY+LIQ+EKNRQ TSLELIASENFTS AVMECLGSVLTNKYAEGLPGARYYGGNEVVDQVENLCRDRALQAYRLDPEKWGVNVQPYSGSPANFAVYTALLRPHDRIMGLDLPSGGHLTHGFYTYNKAEGTRKAVSATSIYFESLPYRVHPDTGLIDYDQME NAALFKPAMIISGGSAYPREWDYARIR+IADANGSLMMVDMAHISGLVA QEAA+PFE+ADVVTTTTHKSLRGPRAGLIFFRKDDRNFEGRINQAVFPALQGGPHEHQIAGVATQLKEVM+PEFKEYAIQVKKNAQAI KAL AKGYKMATGGTVNHLVLWDLRPQ LTGSKME+LCDVLNITLNKNAVVGDRSALTPGGVRIGAPALTSRGFKEADFE+VADFLD+A+KIGLR+QAASGPKLVDF +A+ +D EVK+LK +VN FAKGFPMPG+V
Sbjct:   34 MSLAQNKSLKEHDPVLYDLIQQEKNRQATSLELIASENFTSAAVMECLGSVLTNKYAEGLPGARYYGGNEVVDQVENLCRDRALQAYRLDPEKWGVNVQPYSGSPANFAVYTALLRPHDRIMGLDLPSGGHLTHGFYTYNKAEGTRKAVSATSIYFESLPYRVHPDTGLIDYDQMEVNAALFKPAMIISGGSAYPREWDYARIRAIADANGSLMMVDMAHISGLVAAQEAANPFEYADVVTTTTHKSLRGPRAGLIFFRKDDRNFEGRINQAVFPALQGGPHEHQIAGVATQLKEVMTPEFKEYAIQVKKNAQAIGKALMAKGYKMATGGTVNHLVLWDLRPQGLTGSKMEKLCDVLNITLNKNAVVGDRSALTPGGVRIGAPALTSRGFKEADFEQVADFLDRALKIGLRVQAASGPKLVDFAKAVADDAEVKALKAEVNAFAKGFPMPGIV 486          
BLAST of NO01G02190 vs. NCBI_GenBank
Match: CBN75596.1 (serine hydroxymethyltransferase 2 [Ectocarpus siliculosus])

HSP 1 Score: 703.7 bits (1815), Expect = 3.600e-199
Identity = 335/450 (74.44%), Postives = 385/450 (85.56%), Query Frame = 0
Query:    2 SLAQNKPLKEHDPVLYELIQKEKNRQLTSLELIASENFTSGAVMECLGSVLTNKYAEGLPGARYYGGNEVVDQVENLCRDRALQAYRLDPEKWGVNVQPYSGSPANFAVYTALLRPHDRIMGLDLPSGGHLTHGFYTYNKAEGTRKAVSATSIYFESLPYRVHPDTGLIDYDQMETNAALFKPAMIISGGSAYPREWDYARIRSIADANGSLMMVDMAHISGLVATQEAADPFEFADVVTTTTHKSLRGPRAGLIFFRKDDRNFEGRINQAVFPALQGGPHEHQIAGVATQLKEVMSPEFKEYAIQVKKNAQAIAKALTAKGYKMATGGTVNHLVLWDLRPQALTGSKMERLCDVLNITLNKNAVVGDRSALTPGGVRIGAPALTSRGFKEADFEKVADFLDQAVKIGLRIQAASGPKLVDFTQALGEDEEVKSLKLQVNEFAKGFPMPG 452
            +L  N  L +HDP +++LI+KEK RQ +SLELIASENFTS AVM+CLGS LTNKYAEG+PGARYYGGN+VVDQ+E LC+ RAL+AY LDPEKWGVNVQPYSGSPANFA YTALLRPHDRIMGLDLPSGGHLTHGFYTY+K EGTRKAVSATS+YFESLPYRVHPDTGLID+D +   A LFKPAM+I GGSAYPREWDYA+ R IADANG+L++ DMAHISGLV T+EAA PF+  DVVTTTTHKSLRGPRAGLIF+RKD+R FE +INQAVFPALQGGPHEHQIAGVATQLKE M+PEFKEY IQVKKNA A A  L   GY + TGGT NHL+LWDLRP+ALTGSKME++CD ++ITLNKNAV GDRSA++PGGVRIGAPALT+RG KE +F ++A F+D+A ++ ++IQ  SG  L DF  AL  DEEVK+L   V  FA+ +PMPG
Sbjct:    9 TLPGNVSLADHDPAMFDLIEKEKTRQWSSLELIASENFTSRAVMDCLGSALTNKYAEGVPGARYYGGNQVVDQIEGLCQSRALEAYGLDPEKWGVNVQPYSGSPANFAAYTALLRPHDRIMGLDLPSGGHLTHGFYTYSKKEGTRKAVSATSVYFESLPYRVHPDTGLIDHDDLARLAGLFKPAMVICGGSAYPREWDYAKFREIADANGALLLCDMAHISGLVVTKEAASPFDHCDVVTTTTHKSLRGPRAGLIFYRKDERGFESKINQAVFPALQGGPHEHQIAGVATQLKEAMTPEFKEYIIQVKKNASACADELVKLGYTICTGGTENHLLLWDLRPKALTGSKMEKICDKVHITLNKNAVQGDRSAMSPGGVRIGAPALTTRGMKEPEFRQIAAFMDRAAQLAIKIQQGSGKMLKDFAIALESDEEVKALGDDVKAFARRWPMPG 458          
BLAST of NO01G02190 vs. NCBI_GenBank
Match: XP_002293993.1 (serine hydroxymethyltransferase [Thalassiosira pseudonana CCMP1335] >EED89002.1 serine hydroxymethyltransferase [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 701.4 bits (1809), Expect = 1.800e-198
Identity = 333/445 (74.83%), Postives = 389/445 (87.42%), Query Frame = 0
Query:    7 KPLKEHDPVLYELIQKEKNRQLTSLELIASENFTSGAVMECLGSVLTNKYAEGLPGARYYGGNEVVDQVENLCRDRALQAYRLDPEKWGVNVQPYSGSPANFAVYTALLRPHDRIMGLDLPSGGHLTHGFYTYNKAEGTRKAVSATSIYFESLPYRVHPDTGLIDYDQMETNAALFKPAMIISGGSAYPREWDYARIRSIADANGSLMMVDMAHISGLVATQEAADPFEFADVVTTTTHKSLRGPRAGLIFFRKDDRNFEGRINQAVFPALQGGPHEHQIAGVATQLKEVMSPEFKEYAIQVKKNAQAIAKALTAKGYKMATGGTVNHLVLWDLRPQALTGSKMERLCDVLNITLNKNAVVGDRSALTPGGVRIGAPALTSRGFKEADFEKVADFLDQAVKIGLRIQAASGPKLVDFTQALGEDEEVKSLKLQVNEFAKGFPMPG 452
            KPL EHDP+L++LI+KEK RQ TSLELIASENFTS AVM+CLGS LTNKY+EGLP ARYYGGNE+VDQVE LC+ RAL+AY LD ++WGVNVQPYSGSPANFAVYT LLRPHDRIMGLDLPSGGHLTHGFYTY+K EGTRKAVSATS+YFESLPY+V   TG+I+YDQ+E +A+LFKPAMII+GGSAYPR+WDYAR R IAD NG+L+++DMAHISGLVAT+E   PFE+ DVVTTTTHKSLRGPRAG+IFFR+D+R FE +INQAVFPALQGGPHEHQIAGVATQL EVM+PEF +Y+ QV+KNAQA+   L + GY +ATGGT NHLVLWDL+PQ LTGSK E++CD ++ITLNKN V GDRSA+TPGGVRIGAPALT+R   EADFE++A FL +A+ I L+IQ  SGPKLVDF + L ++ EV+ L+ +VNEFA GFPMPG
Sbjct:   22 KPLSEHDPLLFDLIEKEKLRQYTSLELIASENFTSRAVMDCLGSALTNKYSEGLPHARYYGGNEIVDQVEELCQKRALEAYGLDEKEWGVNVQPYSGSPANFAVYTGLLRPHDRIMGLDLPSGGHLTHGFYTYSKKEGTRKAVSATSVYFESLPYQVDQTTGIINYDQLERDASLFKPAMIIAGGSAYPRDWDYARFRKIADENGALLIMDMAHISGLVATKEQKSPFEYCDVVTTTTHKSLRGPRAGMIFFRRDERGFEHKINQAVFPALQGGPHEHQIAGVATQLLEVMTPEFHQYSAQVRKNAQALGNKLISLGYSLATGGTENHLVLWDLKPQKLTGSKFEKVCDAVSITLNKNCVPGDRSAVTPGGVRIGAPALTTRKMVEADFEQIAMFLHEALTIALKIQEESGPKLVDFVKCLEQNGEVEGLRKRVNEFASGFPMPG 466          
BLAST of NO01G02190 vs. NCBI_GenBank
Match: XP_002186147.1 (serine hydroxymethyltransferase [Phaeodactylum tricornutum CCAP 1055/1] >ACI65617.1 serine hydroxymethyltransferase [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 699.5 bits (1804), Expect = 6.800e-198
Identity = 334/443 (75.40%), Postives = 388/443 (87.58%), Query Frame = 0
Query:    9 LKEHDPVLYELIQKEKNRQLTSLELIASENFTSGAVMECLGSVLTNKYAEGLPGARYYGGNEVVDQVENLCRDRALQAYRLDPEKWGVNVQPYSGSPANFAVYTALLRPHDRIMGLDLPSGGHLTHGFYTYNKAEGTRKAVSATSIYFESLPYRVHPDTGLIDYDQMETNAALFKPAMIISGGSAYPREWDYARIRSIADANGSLMMVDMAHISGLVATQEAADPFEFADVVTTTTHKSLRGPRAGLIFFRKDDRNFEGRINQAVFPALQGGPHEHQIAGVATQLKEVMSPEFKEYAIQVKKNAQAIAKALTAKGYKMATGGTVNHLVLWDLRPQALTGSKMERLCDVLNITLNKNAVVGDRSALTPGGVRIGAPALTSRGFKEADFEKVADFLDQAVKIGLRIQAASGPKLVDFTQALGEDEEVKSLKLQVNEFAKGFPMPG 452
            L+EHDP L++LI++EK+RQ  SLELIASENFTS AVM+CLGS LTNKYAEGLPGARYYGGNEVVDQVE LC+ RAL+AY LDPEKWGVNVQPYSGSPANFAVYTALL+PHDRIMGLDLPSGGHLTHGFYTY+K EGTRKAVSATS+YFESLPYRVHP+TG IDYDQ+E +A LFKPAMII+GGSAYPR++DY R R IADANG+L+M+DMAH SGLVAT E   PFE+ADVVTTTTHKSLRGPRAG+IFFRKD+R FE RINQAVFPALQGGPHEHQIAGVATQLKEV SP+FK Y+ QVKKNA+A+A  LT+ GY MA+GGT NHLVLWDL+PQ +TGSK E++CD ++ITLNKN V GD SA+TPGGVRIG PALT+R   E+DFE++  FL +A++I L IQ  SGPKL DF   L ++ ++++LK++V++FA  FPMPG
Sbjct:   15 LEEHDPELFDLIEQEKSRQWRSLELIASENFTSRAVMDCLGSALTNKYAEGLPGARYYGGNEVVDQVEALCQKRALEAYGLDPEKWGVNVQPYSGSPANFAVYTALLKPHDRIMGLDLPSGGHLTHGFYTYSKKEGTRKAVSATSVYFESLPYRVHPETGYIDYDQLERDAGLFKPAMIIAGGSAYPRDYDYKRFREIADANGALLMMDMAHTSGLVATGELDSPFEYADVVTTTTHKSLRGPRAGMIFFRKDERGFESRINQAVFPALQGGPHEHQIAGVATQLKEVCSPDFKVYSQQVKKNAKALADKLTSMGYSMASGGTENHLVLWDLKPQGITGSKFEKVCDAVSITLNKNCVPGDVSAVTPGGVRIGTPALTTRTMVESDFEQIGQFLHEALEITLAIQEKSGPKLKDFLPLLEKNADIEALKVRVHDFATTFPMPG 457          
BLAST of NO01G02190 vs. NCBI_GenBank
Match: OEU07841.1 (serine hydroxymethyltransferase [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 693.3 bits (1788), Expect = 4.900e-196
Identity = 329/443 (74.27%), Postives = 381/443 (86.00%), Query Frame = 0
Query:    9 LKEHDPVLYELIQKEKNRQLTSLELIASENFTSGAVMECLGSVLTNKYAEGLPGARYYGGNEVVDQVENLCRDRALQAYRLDPEKWGVNVQPYSGSPANFAVYTALLRPHDRIMGLDLPSGGHLTHGFYTYNKAEGTRKAVSATSIYFESLPYRVHPDTGLIDYDQMETNAALFKPAMIISGGSAYPREWDYARIRSIADANGSLMMVDMAHISGLVATQEAADPFEFADVVTTTTHKSLRGPRAGLIFFRKDDRNFEGRINQAVFPALQGGPHEHQIAGVATQLKEVMSPEFKEYAIQVKKNAQAIAKALTAKGYKMATGGTVNHLVLWDLRPQALTGSKMERLCDVLNITLNKNAVVGDRSALTPGGVRIGAPALTSRGFKEADFEKVADFLDQAVKIGLRIQAASGPKLVDFTQALGEDEEVKSLKLQVNEFAKGFPMPG 452
            L++HDP L++LI++EKNRQ  SLELIASENFTS AVM+CLGS LTNKY+EGLPGARYYGGNEVVDQVE LC+ RAL+AY LDPEKWGVNVQPYSGSPANFAVYT LL+PHDRIMGLDLPSGGHLTHGFYTY+K EGTRKAVSATS+YFES PYRVHP+TG +D+D +  +A +FKPAMII GGSAYPR+WDY + R IADANGSL+M+DMAHISGLVAT E   PF++ DVVTTTTHKSLRGPRAG+IFFRKD+R FE +INQAVFPALQGGPHEHQIAGVATQLKEVM+PEFK Y+ QVKKNA A+A+ L +KGYKMA+GGT NHLVLWDL+P  +TGSK E+ CD +NITLNKN V GDRSA+TPGGVRIGA ALT+R   E DFE++A+ L + ++  L++Q  SGPKL DFT  L  DE +KS++ +VN FA  FPMPG
Sbjct:   15 LEDHDPELFDLIEQEKNRQWRSLELIASENFTSKAVMDCLGSALTNKYSEGLPGARYYGGNEVVDQVETLCQKRALKAYGLDPEKWGVNVQPYSGSPANFAVYTGLLKPHDRIMGLDLPSGGHLTHGFYTYSKKEGTRKAVSATSVYFESFPYRVHPETGYVDHDGLARDAGVFKPAMIICGGSAYPRDWDYGKFREIADANGSLLMMDMAHISGLVATGEQTSPFDYCDVVTTTTHKSLRGPRAGMIFFRKDERGFETKINQAVFPALQGGPHEHQIAGVATQLKEVMTPEFKVYSQQVKKNANALAEKLQSKGYKMASGGTENHLVLWDLKPAGITGSKYEKCCDFVNITLNKNCVPGDRSAITPGGVRIGACALTTRKMCEPDFEQIAELLHEVLEAALKLQEKSGPKLKDFTALLDGDETLKSIRERVNAFATTFPMPG 457          
BLAST of NO01G02190 vs. NCBI_GenBank
Match: XP_009528478.1 (hypothetical protein PHYSODRAFT_354725 [Phytophthora sojae] >XP_009528526.1 hypothetical protein PHYSODRAFT_545931 [Phytophthora sojae] >EGZ14729.1 hypothetical protein PHYSODRAFT_354725 [Phytophthora sojae] >EGZ14777.1 hypothetical protein PHYSODRAFT_545931 [Phytophthora sojae])

HSP 1 Score: 690.6 bits (1781), Expect = 3.100e-195
Identity = 331/451 (73.39%), Postives = 381/451 (84.48%), Query Frame = 0
Query:    1 MSLAQNKPLKEHDPVLYELIQKEKNRQLTSLELIASENFTSGAVMECLGSVLTNKYAEGLPGARYYGGNEVVDQVENLCRDRALQAYRLDPEKWGVNVQPYSGSPANFAVYTALLRPHDRIMGLDLPSGGHLTHGFYTYNKAEGTRKAVSATSIYFESLPYRVHPDTGLIDYDQMETNAALFKPAMIISGGSAYPREWDYARIRSIADANGSLMMVDMAHISGLVATQEAADPFEFADVVTTTTHKSLRGPRAGLIFFRKDDRNFEGRINQAVFPALQGGPHEHQIAGVATQLKEVMSPEFKEYAIQVKKNAQAIAKALTAKGYKMATGGTVNHLVLWDLRPQALTGSKMERLCDVLNITLNKNAVVGDRSALTPGGVRIGAPALTSRGFKEADFEKVADFLDQAVKIGLRIQAASGPKLVDFTQALGEDEEVKSLKLQVNEFAKGFPMPG 452
            M LA N  ++E DP ++ LI+ EKNRQ   LELIASENFTS AVM+CLGS LTNKYAEGLP ARYYGGNE++D++E LC+ RALQAY LD EKWGVNVQPYSGSPANFAVYTALLRPHDRIMGLDLPSGGHLTHGFYTY+KAE TRKAVSATS+YFESLPYRV  +TGLID++++   AALFKPA+I+ GGSAYPR+WDYA  R IAD NG+L+M DMAH SGLVAT+E A PF++ D+VTTTTHKSLRGPRAG+IFFR+D+RNFE RINQAVFPALQGGPHEHQIAG+A QLKEV +PEFK Y  Q+K NA+ +AK LT  GY M TGGT NHL+LWDLRPQ +TGSK+E+LCD++ ITLNKNAV+GDRSALTPGGVR+G PALTSRGFKEA+F KVA+FLD+AVK+ + IQA SG KLVDF +A    E VK L+  VN  A  F MPG
Sbjct:    1 MVLAGNATIEEQDPEIFNLIEAEKNRQWKCLELIASENFTSRAVMDCLGSCLTNKYAEGLPNARYYGGNEIIDKIEILCQQRALQAYDLDAEKWGVNVQPYSGSPANFAVYTALLRPHDRIMGLDLPSGGHLTHGFYTYSKAENTRKAVSATSVYFESLPYRVSAETGLIDFEKLAEQAALFKPALIVCGGSAYPRDWDYAAFRKIADDNGALLMCDMAHYSGLVATKEHASPFDYCDIVTTTTHKSLRGPRAGMIFFRRDERNFEPRINQAVFPALQGGPHEHQIAGIAAQLKEVQTPEFKAYVQQLKANAKILAKTLTDLGYSMCTGGTDNHLILWDLRPQKVTGSKLEKLCDLVCITLNKNAVLGDRSALTPGGVRVGTPALTSRGFKEAEFVKVAEFLDRAVKLCVEIQATSGKKLVDFVKAAEAHEGVKQLRRDVNALATSFEMPG 451          
BLAST of NO01G02190 vs. NCBI_GenBank
Match: XP_012204747.1 (serine hydroxymethyltransferase 2 [Saprolegnia parasitica CBS 223.65] >KDO24481.1 serine hydroxymethyltransferase 2 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 690.3 bits (1780), Expect = 4.100e-195
Identity = 332/451 (73.61%), Postives = 381/451 (84.48%), Query Frame = 0
Query:    1 MSLAQNKPLKEHDPVLYELIQKEKNRQLTSLELIASENFTSGAVMECLGSVLTNKYAEGLPGARYYGGNEVVDQVENLCRDRALQAYRLDPEKWGVNVQPYSGSPANFAVYTALLRPHDRIMGLDLPSGGHLTHGFYTYNKAEGTRKAVSATSIYFESLPYRVHPDTGLIDYDQMETNAALFKPAMIISGGSAYPREWDYARIRSIADANGSLMMVDMAHISGLVATQEAADPFEFADVVTTTTHKSLRGPRAGLIFFRKDDRNFEGRINQAVFPALQGGPHEHQIAGVATQLKEVMSPEFKEYAIQVKKNAQAIAKALTAKGYKMATGGTVNHLVLWDLRPQALTGSKMERLCDVLNITLNKNAVVGDRSALTPGGVRIGAPALTSRGFKEADFEKVADFLDQAVKIGLRIQAASGPKLVDFTQALGEDEEVKSLKLQVNEFAKGFPMPG 452
            MS + N  L++HDP ++ LI+ EKNRQ   LELIASENFTS AVM+CLGS LTNKYAEG+P ARYYGGNEV+D++E LC+ RAL+AY L+PE+WGVNVQPYSGSPANFAVYTALLRPHDRIMGLDLPSGGHLTHGFYTY+KAE TRKAVSATS+YFESLPYRVHP+TGL+D++++   AALFKPAMI+ GGSAYPR+WDYA  R IAD NGSL+M DMAH SGLVA QE A PFEF DVVTTTTHKSLRGPRAG+IFFRKD R FE +INQAVFPALQGGPHEHQIA +ATQLKEVM+PEFK YA QVK N +AIA AL   GY ++TGGT NHL+LWDLRP  +TGSKME+LCD + ITLNKN+V+GDRSA+TPGGVR+G PALTSRGFKEADF  VA FL +AV++ L IQA +G K+VDF +AL     VK+L+  VN FA  F MPG
Sbjct:    1 MSASGNISLEQHDPEMFNLIEAEKNRQWKCLELIASENFTSRAVMDCLGSCLTNKYAEGIPSARYYGGNEVIDKIETLCQTRALKAYGLNPEEWGVNVQPYSGSPANFAVYTALLRPHDRIMGLDLPSGGHLTHGFYTYSKAENTRKAVSATSVYFESLPYRVHPETGLVDFEKLAETAALFKPAMIVCGGSAYPRDWDYAAFRKIADDNGSLLMCDMAHYSGLVAAQEHASPFEFCDVVTTTTHKSLRGPRAGMIFFRKDTRGFENKINQAVFPALQGGPHEHQIAAIATQLKEVMTPEFKAYAKQVKSNCRAIAAALVEYGYVLSTGGTDNHLLLWDLRPVGITGSKMEKLCDEVCITLNKNSVLGDRSAVTPGGVRVGTPALTSRGFKEADFVTVAGFLHRAVQLCLEIQATTGKKIVDFNKALESHAGVKALRADVNAFATKFNMPG 451          
BLAST of NO01G02190 vs. NCBI_GenBank
Match: OQS00929.1 (serine hydroxymethyltransferase 1, mitochondrial precursor [Thraustotheca clavata])

HSP 1 Score: 689.5 bits (1778), Expect = 7.000e-195
Identity = 330/451 (73.17%), Postives = 382/451 (84.70%), Query Frame = 0
Query:    1 MSLAQNKPLKEHDPVLYELIQKEKNRQLTSLELIASENFTSGAVMECLGSVLTNKYAEGLPGARYYGGNEVVDQVENLCRDRALQAYRLDPEKWGVNVQPYSGSPANFAVYTALLRPHDRIMGLDLPSGGHLTHGFYTYNKAEGTRKAVSATSIYFESLPYRVHPDTGLIDYDQMETNAALFKPAMIISGGSAYPREWDYARIRSIADANGSLMMVDMAHISGLVATQEAADPFEFADVVTTTTHKSLRGPRAGLIFFRKDDRNFEGRINQAVFPALQGGPHEHQIAGVATQLKEVMSPEFKEYAIQVKKNAQAIAKALTAKGYKMATGGTVNHLVLWDLRPQALTGSKMERLCDVLNITLNKNAVVGDRSALTPGGVRIGAPALTSRGFKEADFEKVADFLDQAVKIGLRIQAASGPKLVDFTQALGEDEEVKSLKLQVNEFAKGFPMPG 452
            MS + N  L++HDP ++ LI+ EKNRQ   LELIASENFTS AVM+CLGS LTNKYAEG+P ARYYGGNEV+D++E LC+ RAL+AY L+PE+WGVNVQPYSGSPANFAVYTALLRPHDRIMGLDLPSGGHLTHGFYTY+KAE TRKAVSATS+YFESLPYRVHP TGLID+D++  +AALFKPA+I+ GGSAYPR+WDYA  R IAD NG+L+M DMAH SGLVATQE A PFE+ DVVTTTTHKSLRGPRAG+IF+RKD R+FE +INQAVFPALQGGPHEHQIA +ATQLKEVM+PEFK+YA QVK N +A+AKAL   GY ++TGGT NHL+LWDLRP  +TGSKME+LCD   ITLNKN+V+GDRSA+TPGGVR+G PALTSRGFKEADF  VA FL +AV++ + IQ  SG K+VDF  AL     VK+L+  VN FA  F MPG
Sbjct:    1 MSASGNISLEQHDPEMFNLIENEKNRQWKCLELIASENFTSRAVMDCLGSALTNKYAEGIPNARYYGGNEVIDKIETLCQTRALKAYGLNPEEWGVNVQPYSGSPANFAVYTALLRPHDRIMGLDLPSGGHLTHGFYTYSKAENTRKAVSATSVYFESLPYRVHPQTGLIDFDKLAESAALFKPALIVCGGSAYPRDWDYASFRKIADDNGTLLMCDMAHYSGLVATQEHASPFEYCDVVTTTTHKSLRGPRAGMIFYRKDARSFENKINQAVFPALQGGPHEHQIAAIATQLKEVMTPEFKQYAKQVKANCRALAKALVEYGYVLSTGGTDNHLLLWDLRPAGITGSKMEKLCDEACITLNKNSVLGDRSAVTPGGVRVGTPALTSRGFKEADFITVAGFLHRAVQLCIEIQKTSGKKIVDFNNALHSHAGVKTLRADVNAFATKFNMPG 451          
BLAST of NO01G02190 vs. NCBI_GenBank
Match: GAX95109.1 (serine hydroxymethyltransferase 1, mitochondrial precursor [Pythium insidiosum])

HSP 1 Score: 688.7 bits (1776), Expect = 1.200e-194
Identity = 332/451 (73.61%), Postives = 375/451 (83.15%), Query Frame = 0
Query:    1 MSLAQNKPLKEHDPVLYELIQKEKNRQLTSLELIASENFTSGAVMECLGSVLTNKYAEGLPGARYYGGNEVVDQVENLCRDRALQAYRLDPEKWGVNVQPYSGSPANFAVYTALLRPHDRIMGLDLPSGGHLTHGFYTYNKAEGTRKAVSATSIYFESLPYRVHPDTGLIDYDQMETNAALFKPAMIISGGSAYPREWDYARIRSIADANGSLMMVDMAHISGLVATQEAADPFEFADVVTTTTHKSLRGPRAGLIFFRKDDRNFEGRINQAVFPALQGGPHEHQIAGVATQLKEVMSPEFKEYAIQVKKNAQAIAKALTAKGYKMATGGTVNHLVLWDLRPQALTGSKMERLCDVLNITLNKNAVVGDRSALTPGGVRIGAPALTSRGFKEADFEKVADFLDQAVKIGLRIQAASGPKLVDFTQALGEDEEVKSLKLQVNEFAKGFPMPG 452
            M L  N  L++HDP ++ LI+ EKNRQ   LEL ASENFTS AVMECLGS LTNKYAEGLP  RYYGGNEV+DQ+E +C+ RAL+AY LDPEKWGVNVQPYSGSPANFAVYT LLRPHDRIMGLDLPSGGHLTHGFYTY+KAE TRKAVSATS+YFESLPYRV P TGLID+D +   AALFKPAMI+ GGSAYPR+WDY R R IAD NG+L+M DMAH SGLVAT E + PF++ DVVTTTTHKSLRGPRAG+IFFRKD+R FE RINQAVFPALQGGPHEHQIAG+ATQLKEV S EFK+Y  QVK NA+ +A ALT KGY M TGGT NH +LWDLRPQ +TGSK+E+LCD++ ITLNKNAV+GDRSALTPGGVR+G PALTSRGFKEA+F +VA FLD+AVK+ + IQA SG KL DF +A    E V  L+  VN+ A  F MPG
Sbjct:    1 MPLTGNVSLEQHDPEIFNLIEAEKNRQWKCLELXASENFTSRAVMECLGSCLTNKYAEGLPHQRYYGGNEVIDQIEVICQQRALKAYGLDPEKWGVNVQPYSGSPANFAVYTGLLRPHDRIMGLDLPSGGHLTHGFYTYSKAEKTRKAVSATSVYFESLPYRVSPQTGLIDFDALAEQAALFKPAMIVCGGSAYPRDWDYKRFRQIADDNGALLMCDMAHYSGLVATGEHSSPFDYCDVVTTTTHKSLRGPRAGMIFFRKDERGFENRINQAVFPALQGGPHEHQIAGIATQLKEVQSDEFKQYIRQVKANAKTLAAALTEKGYTMCTGGTDNHXILWDLRPQGVTGSKLEKLCDLVCITLNKNAVLGDRSALTPGGVRVGTPALTSRGFKEAEFLQVASFLDRAVKLCIEIQATSGKKLTDFVKAAESHEGVTQLRQDVNKLATSFEMPG 451          
The following BLAST results are available for this feature:
BLAST of NO01G02190 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM29153.11.200e-24793.38serine hydroxymethyltransferase [Nannochloropsis g... [more]
EWM29154.11.200e-24793.38serine hydroxymethyltransferase [Nannochloropsis g... [more]
CBN75596.13.600e-19974.44serine hydroxymethyltransferase 2 [Ectocarpus sili... [more]
XP_002293993.11.800e-19874.83serine hydroxymethyltransferase [Thalassiosira pse... [more]
XP_002186147.16.800e-19875.40serine hydroxymethyltransferase [Phaeodactylum tri... [more]
OEU07841.14.900e-19674.27serine hydroxymethyltransferase [Fragilariopsis cy... [more]
XP_009528478.13.100e-19573.39hypothetical protein PHYSODRAFT_354725 [Phytophtho... [more]
XP_012204747.14.100e-19573.61serine hydroxymethyltransferase 2 [Saprolegnia par... [more]
OQS00929.17.000e-19573.17serine hydroxymethyltransferase 1, mitochondrial p... [more]
GAX95109.11.200e-19473.61serine hydroxymethyltransferase 1, mitochondrial p... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL006nonsL006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008117NSK008117Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G02190.1NO01G02190.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576554gene_204Nannochloropsis oceanica (N. oceanica CCMP1779)gene
SHMT2gene1472Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G02190.1NO01G02190.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G02190 ID=NO01G02190|Name=NO01G02190|organism=Nannochloropsis oceanica|type=gene|length=1783bp
ATGTCTCTGGCTCAGAACAAACCGCTGAAGGAACACGACCCCGTGCTCTA
TGAGCTAATTCAAAAGgtaaggaagggagtaagtgaaggaggagagggta
tgtggccccaggtcgcgtgtgatgagtgcttggagcttcttacggcagct
tggttggctgcacagtcgcttcgccctttggaagacagcatgtgggtctg
tgtctgcatgtgcttgactcatgaagtatttatcttccctccgtggtgat
gaacagcgtaactcattctatcccttcccttttttctctccttgcccgca
cacagGAGAAGAACCGCCAGCTCACCTCCTTAGAGCTGATTGCCTCGGAA
AACTTCACTTCCGGTGCCGTTATGGAATGCTTGGGCTCCGTACTAACAAA
TAAGgtgagaaggagggatatagtgagagactattctgtggtatgtcgtc
cagctgcttgacacggtgttcctcttaatttgccgccacatcaactaaat
gcggtccctgtctcccgacgcctcaccgcttcacgatctttctttaattt
aatccctctcacccttccttccatcctttcctgtagTATGCCGAAGGTCT
TCCCGGCGCCCGCTACTACGGCGGCAATGAAGTGGTGGACCAAGTCGAGA
ACTTGTGCCGCGACCGGGCCCTGCAGGCTTACCGGTTGGATCCGGAGAAG
TGGGGCGTGAACGTCCAGCCCTATTCCGGCAGCCCGGCCAACTTTGCGGT
ATACACGGCGTTGCTTCGCCCGCACGACCGTATCATGGGCTTGGACTTGC
CCAGTGGAGGGCACTTGACCCACGGTTTCTACACCTACAACAAGGCGGAG
GGTACCCGTAAGGCTGTGTCCGCCACGAGCATCTACTTCGAGTCTCTCCC
TTACCGCGTGCACCCTGATACGGGCCTGATCGACTACGACCAGATGGAGA
CGAACGCCGCGCTGTTCAAGCCCGCTATGATAATTTCCGGTGGCTCGGCC
TACCCCCGTGAGTGGGACTATGCTCGTATCCGCTCTATTGCCGATGCCAA
CGGCTCACTCATGATGGTGGACATGGCGCATATCTCGGGCCTGGTCGCCA
CGCAAGAGGCGGCGGACCCCTTCGAGTTCGCAGACGTGGTCACCACAACC
ACTCACAAGTCCCTTCGTGGGCCCCGAGCTGGCCTCATCTTTTTCCGCAA
AGATGACCGTAACTTTGAAGGCCGCATCAATCAGGCTGTCTTCCCGGCTC
TGCAGGGCGGGCCTCACGAACACCAGATTGCTGGTGTTGCCACGCAACTG
AAGGAGGTCATGTCACCCGAGTTCAAGGAATACGCAATCCAGGTAAAGAA
GAACGCGCAGGCCATCGCCAAGGCTCTGACTGCTAAGGGTTACAAGATGG
CGACCGGCGGCACGGTCAATCACTTGGTGCTGTGGGATTTGCGTCCTCAG
GCTCTAACGGGGAGCAAGATGGAGAGGCTCTGCGATGTCCTCAACATCAC
CCTGAACAAGAACGCTGTCGTCGGCGACCGTAGCGCCTTGACTCCCGGCG
GGGTGCGCATCGGTGCACCGGCCTTGACAAGTCGTGGATTCAAGGAGGCG
GATTTCGAAAAGGTTGCTGACTTTTTGGACCAGGCGGTGAAGATCGGGTT
GAGGATCCAAGCTGCCTCTGGGCCGAAGCTGGTGGATTTCACCCAGGCTC
TAGGGGAGGATGAAGAGGTCAAGTCGTTGAAGTTGCAGGTGAATGAGTTT
GCCAAGGGCTTTCCCATGCCGGGATTGGTCTAA
back to top

protein sequence of NO01G02190.1

>NO01G02190.1-protein ID=NO01G02190.1-protein|Name=NO01G02190.1|organism=Nannochloropsis oceanica|type=polypeptide|length=454bp
MSLAQNKPLKEHDPVLYELIQKEKNRQLTSLELIASENFTSGAVMECLGS
VLTNKYAEGLPGARYYGGNEVVDQVENLCRDRALQAYRLDPEKWGVNVQP
YSGSPANFAVYTALLRPHDRIMGLDLPSGGHLTHGFYTYNKAEGTRKAVS
ATSIYFESLPYRVHPDTGLIDYDQMETNAALFKPAMIISGGSAYPREWDY
ARIRSIADANGSLMMVDMAHISGLVATQEAADPFEFADVVTTTTHKSLRG
PRAGLIFFRKDDRNFEGRINQAVFPALQGGPHEHQIAGVATQLKEVMSPE
FKEYAIQVKKNAQAIAKALTAKGYKMATGGTVNHLVLWDLRPQALTGSKM
ERLCDVLNITLNKNAVVGDRSALTPGGVRIGAPALTSRGFKEADFEKVAD
FLDQAVKIGLRIQAASGPKLVDFTQALGEDEEVKSLKLQVNEFAKGFPMP
GLV*
back to top
Synonyms
Publications