NO01G02190.1, NO01G02190.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G02190.1
Unique NameNO01G02190.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1362
Alignment locationchr1:556394..558176 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:556394..558176 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO01G02190.1 vs.
Match: EWM29154.1 (serine hydroxymethyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 864.8 bits (2233), Expect = 1.200e-247
Identity = 423/453 (93.38%), Postives = 440/453 (97.13%), Query Frame = 0 
Query:    1 MSLAQNKPLKEHDPVLYELIQKEKNRQLTSLELIASENFTSGAVMECLGSVLTNKYAEGLPGARYYGGNEVVDQVENLCRDRALQAYRLDPEKWGVNVQPYSGSPANFAVYTALLRPHDRIMGLDLPSGGHLTHGFYTYNKAEGTRKAVSATSIYFESLPYRVHPDTGLIDYDQMETNAALFKPAMIISGGSAYPREWDYARIRSIADANGSLMMVDMAHISGLVATQEAADPFEFADVVTTTTHKSLRGPRAGLIFFRKDDRNFEGRINQAVFPALQGGPHEHQIAGVATQLKEVMSPEFKEYAIQVKKNAQAIAKALTAKGYKMATGGTVNHLVLWDLRPQALTGSKMERLCDVLNITLNKNAVVGDRSALTPGGVRIGAPALTSRGFKEADFEKVADFLDQAVKIGLRIQAASGPKLVDFTQALGEDEEVKSLKLQVNEFAKGFPMPGLV 454
            MSLAQNK LKEHDPVLY+LIQ+EKNRQ TSLELIASENFTS AVMECLGSVLTNKYAEGLPGARYYGGNEVVDQVENLCRDRALQAYRLDPEKWGVNVQPYSGSPANFAVYTALLRPHDRIMGLDLPSGGHLTHGFYTYNKAEGTRKAVSATSIYFESLPYRVHPDTGLIDYDQME NAALFKPAMIISGGSAYPREWDYARIR+IADANGSLMMVDMAHISGLVA QEAA+PFE+ADVVTTTTHKSLRGPRAGLIFFRKDDRNFEGRINQAVFPALQGGPHEHQIAGVATQLKEVM+PEFKEYAIQVKKNAQAI KAL AKGYKMATGGTVNHLVLWDLRPQ LTGSKME+LCDVLNITLNKNAVVGDRSALTPGGVRIGAPALTSRGFKEADFE+VADFLD+A+KIGLR+QAASGPKLVDF +A+ +D EVK+LK +VN FAKGFPMPG+V
Sbjct:   34 MSLAQNKSLKEHDPVLYDLIQQEKNRQATSLELIASENFTSAAVMECLGSVLTNKYAEGLPGARYYGGNEVVDQVENLCRDRALQAYRLDPEKWGVNVQPYSGSPANFAVYTALLRPHDRIMGLDLPSGGHLTHGFYTYNKAEGTRKAVSATSIYFESLPYRVHPDTGLIDYDQMEVNAALFKPAMIISGGSAYPREWDYARIRAIADANGSLMMVDMAHISGLVAAQEAANPFEYADVVTTTTHKSLRGPRAGLIFFRKDDRNFEGRINQAVFPALQGGPHEHQIAGVATQLKEVMTPEFKEYAIQVKKNAQAIGKALMAKGYKMATGGTVNHLVLWDLRPQGLTGSKMEKLCDVLNITLNKNAVVGDRSALTPGGVRIGAPALTSRGFKEADFEQVADFLDRALKIGLRVQAASGPKLVDFAKAVADDAEVKALKAEVNAFAKGFPMPGIV 486
The following BLAST results are available for this feature:
BLAST of NO01G02190.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29154.11.200e-24793.38serine hydroxymethyltransferase [Nannochloropsis g... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G02190NO01G02190Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G02190.1NO01G02190.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G02190.1.cds1NO01G02190.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G02190.1.cds2NO01G02190.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G02190.1.cds3NO01G02190.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G02190.1 ID=NO01G02190.1|Name=NO01G02190.1|organism=Nannochloropsis oceanica|type=mRNA|length=1362bp
ATGTCTCTGGCTCAGAACAAACCGCTGAAGGAACACGACCCCGTGCTCTA
TGAGCTAATTCAAAAGGAGAAGAACCGCCAGCTCACCTCCTTAGAGCTGA
TTGCCTCGGAAAACTTCACTTCCGGTGCCGTTATGGAATGCTTGGGCTCC
GTACTAACAAATAAGTATGCCGAAGGTCTTCCCGGCGCCCGCTACTACGG
CGGCAATGAAGTGGTGGACCAAGTCGAGAACTTGTGCCGCGACCGGGCCC
TGCAGGCTTACCGGTTGGATCCGGAGAAGTGGGGCGTGAACGTCCAGCCC
TATTCCGGCAGCCCGGCCAACTTTGCGGTATACACGGCGTTGCTTCGCCC
GCACGACCGTATCATGGGCTTGGACTTGCCCAGTGGAGGGCACTTGACCC
ACGGTTTCTACACCTACAACAAGGCGGAGGGTACCCGTAAGGCTGTGTCC
GCCACGAGCATCTACTTCGAGTCTCTCCCTTACCGCGTGCACCCTGATAC
GGGCCTGATCGACTACGACCAGATGGAGACGAACGCCGCGCTGTTCAAGC
CCGCTATGATAATTTCCGGTGGCTCGGCCTACCCCCGTGAGTGGGACTAT
GCTCGTATCCGCTCTATTGCCGATGCCAACGGCTCACTCATGATGGTGGA
CATGGCGCATATCTCGGGCCTGGTCGCCACGCAAGAGGCGGCGGACCCCT
TCGAGTTCGCAGACGTGGTCACCACAACCACTCACAAGTCCCTTCGTGGG
CCCCGAGCTGGCCTCATCTTTTTCCGCAAAGATGACCGTAACTTTGAAGG
CCGCATCAATCAGGCTGTCTTCCCGGCTCTGCAGGGCGGGCCTCACGAAC
ACCAGATTGCTGGTGTTGCCACGCAACTGAAGGAGGTCATGTCACCCGAG
TTCAAGGAATACGCAATCCAGGTAAAGAAGAACGCGCAGGCCATCGCCAA
GGCTCTGACTGCTAAGGGTTACAAGATGGCGACCGGCGGCACGGTCAATC
ACTTGGTGCTGTGGGATTTGCGTCCTCAGGCTCTAACGGGGAGCAAGATG
GAGAGGCTCTGCGATGTCCTCAACATCACCCTGAACAAGAACGCTGTCGT
CGGCGACCGTAGCGCCTTGACTCCCGGCGGGGTGCGCATCGGTGCACCGG
CCTTGACAAGTCGTGGATTCAAGGAGGCGGATTTCGAAAAGGTTGCTGAC
TTTTTGGACCAGGCGGTGAAGATCGGGTTGAGGATCCAAGCTGCCTCTGG
GCCGAAGCTGGTGGATTTCACCCAGGCTCTAGGGGAGGATGAAGAGGTCA
AGTCGTTGAAGTTGCAGGTGAATGAGTTTGCCAAGGGCTTTCCCATGCCG
GGATTGGTCTAA
back to top

protein sequence of NO01G02190.1

>NO01G02190.1-protein ID=NO01G02190.1-protein|Name=NO01G02190.1|organism=Nannochloropsis oceanica|type=polypeptide|length=454bp
MSLAQNKPLKEHDPVLYELIQKEKNRQLTSLELIASENFTSGAVMECLGS
VLTNKYAEGLPGARYYGGNEVVDQVENLCRDRALQAYRLDPEKWGVNVQP
YSGSPANFAVYTALLRPHDRIMGLDLPSGGHLTHGFYTYNKAEGTRKAVS
ATSIYFESLPYRVHPDTGLIDYDQMETNAALFKPAMIISGGSAYPREWDY
ARIRSIADANGSLMMVDMAHISGLVATQEAADPFEFADVVTTTTHKSLRG
PRAGLIFFRKDDRNFEGRINQAVFPALQGGPHEHQIAGVATQLKEVMSPE
FKEYAIQVKKNAQAIAKALTAKGYKMATGGTVNHLVLWDLRPQALTGSKM
ERLCDVLNITLNKNAVVGDRSALTPGGVRIGAPALTSRGFKEADFEKVAD
FLDQAVKIGLRIQAASGPKLVDFTQALGEDEEVKSLKLQVNEFAKGFPMP
GLV*
back to top

mRNA from alignment at chr1:556394..558176+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G02190.1 ID=NO01G02190.1|Name=NO01G02190.1|organism=Nannochloropsis oceanica|type=mRNA|length=1783bp|location=Sequence derived from alignment at chr1:556394..558176+ (Nannochloropsis oceanica)
ATGTCTCTGGCTCAGAACAAACCGCTGAAGGAACACGACCCCGTGCTCTA
TGAGCTAATTCAAAAGGTAAGGAAGGGAGTAAGTGAAGGAGGAGAGGGTA
TGTGGCCCCAGGTCGCGTGTGATGAGTGCTTGGAGCTTCTTACGGCAGCT
TGGTTGGCTGCACAGTCGCTTCGCCCTTTGGAAGACAGCATGTGGGTCTG
TGTCTGCATGTGCTTGACTCATGAAGTATTTATCTTCCCTCCGTGGTGAT
GAACAGCGTAACTCATTCTATCCCTTCCCTTTTTTCTCTCCTTGCCCGCA
CACAGGAGAAGAACCGCCAGCTCACCTCCTTAGAGCTGATTGCCTCGGAA
AACTTCACTTCCGGTGCCGTTATGGAATGCTTGGGCTCCGTACTAACAAA
TAAGGTGAGAAGGAGGGATATAGTGAGAGACTATTCTGTGGTATGTCGTC
CAGCTGCTTGACACGGTGTTCCTCTTAATTTGCCGCCACATCAACTAAAT
GCGGTCCCTGTCTCCCGACGCCTCACCGCTTCACGATCTTTCTTTAATTT
AATCCCTCTCACCCTTCCTTCCATCCTTTCCTGTAGTATGCCGAAGGTCT
TCCCGGCGCCCGCTACTACGGCGGCAATGAAGTGGTGGACCAAGTCGAGA
ACTTGTGCCGCGACCGGGCCCTGCAGGCTTACCGGTTGGATCCGGAGAAG
TGGGGCGTGAACGTCCAGCCCTATTCCGGCAGCCCGGCCAACTTTGCGGT
ATACACGGCGTTGCTTCGCCCGCACGACCGTATCATGGGCTTGGACTTGC
CCAGTGGAGGGCACTTGACCCACGGTTTCTACACCTACAACAAGGCGGAG
GGTACCCGTAAGGCTGTGTCCGCCACGAGCATCTACTTCGAGTCTCTCCC
TTACCGCGTGCACCCTGATACGGGCCTGATCGACTACGACCAGATGGAGA
CGAACGCCGCGCTGTTCAAGCCCGCTATGATAATTTCCGGTGGCTCGGCC
TACCCCCGTGAGTGGGACTATGCTCGTATCCGCTCTATTGCCGATGCCAA
CGGCTCACTCATGATGGTGGACATGGCGCATATCTCGGGCCTGGTCGCCA
CGCAAGAGGCGGCGGACCCCTTCGAGTTCGCAGACGTGGTCACCACAACC
ACTCACAAGTCCCTTCGTGGGCCCCGAGCTGGCCTCATCTTTTTCCGCAA
AGATGACCGTAACTTTGAAGGCCGCATCAATCAGGCTGTCTTCCCGGCTC
TGCAGGGCGGGCCTCACGAACACCAGATTGCTGGTGTTGCCACGCAACTG
AAGGAGGTCATGTCACCCGAGTTCAAGGAATACGCAATCCAGGTAAAGAA
GAACGCGCAGGCCATCGCCAAGGCTCTGACTGCTAAGGGTTACAAGATGG
CGACCGGCGGCACGGTCAATCACTTGGTGCTGTGGGATTTGCGTCCTCAG
GCTCTAACGGGGAGCAAGATGGAGAGGCTCTGCGATGTCCTCAACATCAC
CCTGAACAAGAACGCTGTCGTCGGCGACCGTAGCGCCTTGACTCCCGGCG
GGGTGCGCATCGGTGCACCGGCCTTGACAAGTCGTGGATTCAAGGAGGCG
GATTTCGAAAAGGTTGCTGACTTTTTGGACCAGGCGGTGAAGATCGGGTT
GAGGATCCAAGCTGCCTCTGGGCCGAAGCTGGTGGATTTCACCCAGGCTC
TAGGGGAGGATGAAGAGGTCAAGTCGTTGAAGTTGCAGGTGAATGAGTTT
GCCAAGGGCTTTCCCATGCCGGGATTGGTCTAA
back to top

Coding sequence (CDS) from alignment at chr1:556394..558176+

>NO01G02190.1 ID=NO01G02190.1|Name=NO01G02190.1|organism=Nannochloropsis oceanica|type=CDS|length=1362bp|location=Sequence derived from alignment at chr1:556394..558176+ (Nannochloropsis oceanica)
ATGTCTCTGGCTCAGAACAAACCGCTGAAGGAACACGACCCCGTGCTCTA
TGAGCTAATTCAAAAGGAGAAGAACCGCCAGCTCACCTCCTTAGAGCTGA
TTGCCTCGGAAAACTTCACTTCCGGTGCCGTTATGGAATGCTTGGGCTCC
GTACTAACAAATAAGTATGCCGAAGGTCTTCCCGGCGCCCGCTACTACGG
CGGCAATGAAGTGGTGGACCAAGTCGAGAACTTGTGCCGCGACCGGGCCC
TGCAGGCTTACCGGTTGGATCCGGAGAAGTGGGGCGTGAACGTCCAGCCC
TATTCCGGCAGCCCGGCCAACTTTGCGGTATACACGGCGTTGCTTCGCCC
GCACGACCGTATCATGGGCTTGGACTTGCCCAGTGGAGGGCACTTGACCC
ACGGTTTCTACACCTACAACAAGGCGGAGGGTACCCGTAAGGCTGTGTCC
GCCACGAGCATCTACTTCGAGTCTCTCCCTTACCGCGTGCACCCTGATAC
GGGCCTGATCGACTACGACCAGATGGAGACGAACGCCGCGCTGTTCAAGC
CCGCTATGATAATTTCCGGTGGCTCGGCCTACCCCCGTGAGTGGGACTAT
GCTCGTATCCGCTCTATTGCCGATGCCAACGGCTCACTCATGATGGTGGA
CATGGCGCATATCTCGGGCCTGGTCGCCACGCAAGAGGCGGCGGACCCCT
TCGAGTTCGCAGACGTGGTCACCACAACCACTCACAAGTCCCTTCGTGGG
CCCCGAGCTGGCCTCATCTTTTTCCGCAAAGATGACCGTAACTTTGAAGG
CCGCATCAATCAGGCTGTCTTCCCGGCTCTGCAGGGCGGGCCTCACGAAC
ACCAGATTGCTGGTGTTGCCACGCAACTGAAGGAGGTCATGTCACCCGAG
TTCAAGGAATACGCAATCCAGGTAAAGAAGAACGCGCAGGCCATCGCCAA
GGCTCTGACTGCTAAGGGTTACAAGATGGCGACCGGCGGCACGGTCAATC
ACTTGGTGCTGTGGGATTTGCGTCCTCAGGCTCTAACGGGGAGCAAGATG
GAGAGGCTCTGCGATGTCCTCAACATCACCCTGAACAAGAACGCTGTCGT
CGGCGACCGTAGCGCCTTGACTCCCGGCGGGGTGCGCATCGGTGCACCGG
CCTTGACAAGTCGTGGATTCAAGGAGGCGGATTTCGAAAAGGTTGCTGAC
TTTTTGGACCAGGCGGTGAAGATCGGGTTGAGGATCCAAGCTGCCTCTGG
GCCGAAGCTGGTGGATTTCACCCAGGCTCTAGGGGAGGATGAAGAGGTCA
AGTCGTTGAAGTTGCAGGTGAATGAGTTTGCCAAGGGCTTTCCCATGCCG
GGATTGGTCTAA
back to top
Synonyms
Publications