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Properties
| Property Name | Value |
|---|
| Product | serine hydroxymethyltransferase |
| Orig transcript id | gnl|cribi|Naga_100007g45.6481.mrna |
| Orig protein id | gnl|cribi|Naga_100007g45.6481 |
| Gene | SHMT2 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 2; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002457.1 | supercontig | CM002457.1:866595..869033 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna1528 ID=rna1528|Name=rna1528|organism=Nannochloropsis gaditana|type=mRNA|length=1916bp
ACTCCCGTATTTGGTCTTGCGATTGCGATGGCTCCAGACGGAACAACCTC
AGCACACTCGCTTTCCTCGTCTACAACCATGTCTCTTGCTCAAAACAAGT
CTTTAAAGGAGCACGATCCTGTCTTGTACGACCTTATTCAGCAGGAAAAA
AATCGTCAGGCTACTTCTTTGGAGCTGATCGCCTCCGAGAACTTCACCTC
CGCGGCTGTCATGGAGTGCCTGGGCTCCGTTCTGACGAACAAGTACGCCG
AGGGTCTGCCCGGCGCCCGCTACTACGGTGGCAATGAGGTCGTGGATCAA
GTGGAGAACTTGTGCCGCGACCGGGCCCTCCAAGCCTACCGCCTCGACCC
CGAGAAGTGGGGCGTGAACGTCCAGCCATACTCCGGCAGTCCCGCCAACT
TCGCGGTCTACACAGCCCTGCTACGGCCCCACGATCGTATCATGGGGCTG
GATTTGCCCTCGGGGGGACACCTGACGCACGGCTTCTACACCTACAACAA
AGCCGAGGGCACGCGCAAGGCCGTGTCCGCTACCAGCATCTACTTCGAGT
CCCTCCCTTACCGTGTGCACCCCGACACGGGCCTCATCGACTACGACCAG
ATGGAGGTGAACGCGGCGCTCTTCAAGCCGGCCATGATCATCTCCGGGGG
CTCGGCCTACCCCCGCGAGTGGGACTACGCACGGATTCGCGCCATCGCGG
ACGCGAACGGATCCCTGATGATGGTCGACATGGCCCACATTTCCGGCCTC
GTTGCCGCACAGGAGGCAGCGAACCCCTTCGAGTACGCAGATGTGGTCAC
GACCACAACCCATAAGTCCCTCCGTGGACCCCGTGCCGGCCTGATTTTCT
TCCGCAAGGACGACCGCAACTTCGAGGGGAGGATCAATCAAGCCGTCTTC
CCGGCGCTCCAGGGGGGGCCGCACGAGCACCAGATCGCCGGTGTAGCCAC
GCAACTGAAAGAGGTCATGACTCCCGAGTTCAAGGAGTACGCGATCCAGG
TGAAGAAGAACGCCCAGGCTATCGGGAAGGCGCTCATGGCCAAGGGCTAC
AAGATGGCGACGGGCGGGACTGTCAACCACCTGGTTCTCTGGGACCTTCG
GCCCCAAGGCCTGACGGGAAGCAAGATGGAGAAGCTTTGCGATGTCCTGA
ACATCACATTGAACAAAAATGCGGTAGTCGGGGACCGCAGCGCTCTTACA
CCGGGAGGAGTCCGGATCGGAGCACCAGCCCTGACGAGCCGCGGGTTTAA
GGAGGCGGATTTCGAGCAGGTGGCTGATTTCTTGGACCGAGCCCTGAAAA
TTGGCTTGAGAGTGCAGGCGGCATCGGGGCCCAAGCTGGTTGACTTTGCC
AAGGCCGTGGCCGACGACGCCGAGGTGAAGGCCTTAAAGGCGGAGGTGAA
CGCTTTCGCAAAGGGGTTTCCGATGCCCGGCATCGTCTAAGTGCTCGAGC
ACGCGCGTTTTACCACTTATAGAAAGACAGGCGTATTGAGAGATCCTGGC
TATGGTGATTGGAGGAAGAAAAGATGGGAAAGGGGCCGTCGAGGAACGGA
TACGTGACAGCATTGCCACGATTTTCTCCAAGGATAGTAGGTGTAGTCAC
CCGGACAGTATATGTCTAAGTTACTGGTACCGAGGAATGGCGGAAACGAC
GATCTACGAAATCCTGTATCTCCAACGTTTGGGATGGAAGTAAAAGGGCA
TGGCAAGAACGTGTACACCACGTGTGGAAGAGGGAACATTTCTTAGCCAT
CGATTGTGTCAAACGGATCCCTTCTCTTGAGGTCACTTGCATTGCATGCT
TAGCATACAGAGCTTCTAAATATAAGATGAAGCAAGCTTTGTCGGATGCG
TCCTCGAGTTGTTGCGGATTTTGTCTTTTCTTTGATCTATCTTAATTGTT
TGCGCATTAGAGCCGC back to topprotein sequence of rna1528 >rna1528-protein ID=rna1528-protein|Name=rna1528|organism=Nannochloropsis gaditana|type=polypeptide|length=486bp
MAGSAGVKCVVMTHRISFPTGTTSAHSLSSSTTMSLAQNKSLKEHDPVLY
DLIQQEKNRQATSLELIASENFTSAAVMECLGSVLTNKYAEGLPGARYYG
GNEVVDQVENLCRDRALQAYRLDPEKWGVNVQPYSGSPANFAVYTALLRP
HDRIMGLDLPSGGHLTHGFYTYNKAEGTRKAVSATSIYFESLPYRVHPDT
GLIDYDQMEVNAALFKPAMIISGGSAYPREWDYARIRAIADANGSLMMVD
MAHISGLVAAQEAANPFEYADVVTTTTHKSLRGPRAGLIFFRKDDRNFEG
RINQAVFPALQGGPHEHQIAGVATQLKEVMTPEFKEYAIQVKKNAQAIGK
ALMAKGYKMATGGTVNHLVLWDLRPQGLTGSKMEKLCDVLNITLNKNAVV
GDRSALTPGGVRIGAPALTSRGFKEADFEQVADFLDRALKIGLRVQAASG
PKLVDFAKAVADDAEVKALKAEVNAFAKGFPMPGIV back to topmRNA from alignment at CM002457.1:866595..869033- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna1528 ID=rna1528|Name=rna1528|organism=Nannochloropsis gaditana|type=mRNA|length=2439bp|location=Sequence derived from alignment at CM002457.1:866595..869033- (Nannochloropsis gaditana)
TAATGGACTCTGCGGGCGATGCACTTGGGTATTCAAGTGGTGCATTCTCA
GTGGACGTGTCAGCCGTTTTTGAAGCATTGGACTTTCTCCAAGCCAACTT
GCCATGTATTGCAGAGGCTTATCTTGCACCGATGAGATGCTCAGACCATT
TCCACCATTATGGCAGGGTCGGCCGGCGTGAAATGTGTCGTGATGACTCA
TCGTATCTCTTTTCCGACAGGAACAACCTCAGCACACTCGCTTTCCTCGT
CTACAACCATGTCTCTTGCTCAAAACAAGTCTTTAAAGGAGCACGATCCT
GTCTTGTACGACCTTATTCAGCAGGTAAAGTAGGAGGGTGGGAATGTGGC
GTACGTTTCAGAGCCGAGTGCACGATCAGACCGGCTGCGCGATAGGACTT
GCGTGTGAGTGTGATTACAGTCTTTCCTGTCTCCATGCGAGCCCTCCCTT
ACTCTCTTCATTTCATGGTAGAAAATAAAAATCACTGACACGTTGGCATA
TTCCATATCAGGAAAAAAATCGTCAGGCTACTTCTTTGGAGCTGATCGCC
TCCGAGAACTTCACCTCCGCGGCTGTCATGGAGTGCCTGGGCTCCGTTCT
GACGAACAAGGTGAGCTCGGATGTCCATGTAAAAGTTTCAGTCGGTGTAC
CTATAGGAAGTCTTGCTTTATAACAGCGCGACCTTCGGCCCAGGCTCTTC
GCCTTGTTGGCAGCGCAAATACAGCTCACCCACAAGCATACTTTTTCCCC
CCCTCCAATTCTCTAGTACGCCGAGGGTCTGCCCGGCGCCCGCTACTACG
GTGGCAATGAGGTCGTGGATCAAGTGGAGAACTTGTGCCGCGACCGGGCC
CTCCAAGCCTACCGCCTCGACCCCGAGAAGTGGGGCGTGAACGTCCAGCC
ATACTCCGGCAGTCCCGCCAACTTCGCGGTCTACACAGCCCTGCTACGGC
CCCACGATCGTATCATGGGGCTGGATTTGCCCTCGGGGGGACACCTGACG
CACGGCTTCTACACCTACAACAAAGCCGAGGGCACGCGCAAGGCCGTGTC
CGCTACCAGCATCTACTTCGAGTCCCTCCCTTACCGTGTGCACCCCGACA
CGGGCCTCATCGACTACGACCAGATGGAGGTGAACGCGGCGCTCTTCAAG
CCGGCCATGATCATCTCCGGGGGCTCGGCCTACCCCCGCGAGTGGGACTA
CGCACGGATTCGCGCCATCGCGGACGCGAACGGATCCCTGATGATGGTCG
ACATGGCCCACATTTCCGGCCTCGTTGCCGCACAGGAGGCAGCGAACCCC
TTCGAGTACGCAGATGTGGTCACGACCACAACCCATAAGTCCCTCCGTGG
ACCCCGTGCCGGCCTGATTTTCTTCCGCAAGGACGACCGCAACTTCGAGG
GGAGGATCAATCAAGCCGTCTTCCCGGCGCTCCAGGGGGGGCCGCACGAG
CACCAGATCGCCGGTGTAGCCACGCAACTGAAAGAGGTCATGACTCCCGA
GTTCAAGGAGTACGCGATCCAGGTGAAGAAGAACGCCCAGGCTATCGGGA
AGGCGCTCATGGCCAAGGGCTACAAGATGGCGACGGGCGGGACTGTCAAC
CACCTGGTTCTCTGGGACCTTCGGCCCCAAGGCCTGACGGGAAGCAAGAT
GGAGAAGCTTTGCGATGTCCTGAACATCACATTGAACAAAAATGCGGTAG
TCGGGGACCGCAGCGCTCTTACACCGGGAGGAGTCCGGATCGGAGCACCA
GCCCTGACGAGCCGCGGGTTTAAGGAGGCGGATTTCGAGCAGGTGGCTGA
TTTCTTGGACCGAGCCCTGAAAATTGGCTTGAGAGTGCAGGCGGCATCGG
GGCCCAAGCTGGTTGACTTTGCCAAGGCCGTGGCCGACGACGCCGAGGTG
AAGGCCTTAAAGGCGGAGGTGAACGCTTTCGCAAAGGGGTTTCCGATGCC
CGGCATCGTCTAAGTGCTCGAGCACGCGCGTTTTACCACTTATAGAAAGA
CAGGCGTATTGAGAGATCCTGGCTATGGTGATTGGAGGAAGAAAAGATGG
GAAAGGGGCCGTCGAGGAACGGATACGTGACAGCATTGCCACGATTTTCT
CCAAGGATAGTAGGTGTAGTCACCCGGACAGTATATGTCTAAGTTACTGG
TACCGAGGAATGGCGGAAACGACGATCTACGAAATCCTGTATCTCCAACG
TTTGGGATGGAAGTAAAAGGGCATGGCAAGAACGTGTACACCACGTGTGG
AAGAGGGAACATTTCTTAGCCATCGATTGTGTCAAACGGATCCCTTCTCT
TGAGGTCACTTGCATTGCATGCTTAGCATACAGAGCTTCTAAATATAAGA
TGAAGCAAGCTTTGTCGGATGCGTCCTCGAGTTGTTGCGGATTTTGTCTT
TTCTTTGATCTATCTTAATTGTTTGCGCATTAGAGCCGC back to topCoding sequence (CDS) from alignment at CM002457.1:866595..869033- >rna1528 ID=rna1528|Name=rna1528|organism=Nannochloropsis gaditana|type=CDS|length=4383bp|location=Sequence derived from alignment at CM002457.1:866595..869033- (Nannochloropsis gaditana)
TACGCCGAGGGTCTGCCCGGCGCCCGCTACTACGGTGGCAATGAGGTCGT
GGATCAAGTGGAGAACTTGTGCCGCGACCGGGCCCTCCAAGCCTACCGCC
TCGACCCCGAGAAGTGGGGCGTGAACGTCCAGCCATACTCCGGCAGTCCC
GCCAACTTCGCGGTCTACACAGCCCTGCTACGGCCCCACGATCGTATCAT
GGGGCTGGATTTGCCCTCGGGGGGACACCTGACGCACGGCTTCTACACCT
ACAACAAAGCCGAGGGCACGCGCAAGGCCGTGTCCGCTACCAGCATCTAC
TTCGAGTCCCTCCCTTACCGTGTGCACCCCGACACGGGCCTCATCGACTA
CGACCAGATGGAGGTGAACGCGGCGCTCTTCAAGCCGGCCATGATCATCT
CCGGGGGCTCGGCCTACCCCCGCGAGTGGGACTACGCACGGATTCGCGCC
ATCGCGGACGCGAACGGATCCCTGATGATGGTCGACATGGCCCACATTTC
CGGCCTCGTTGCCGCACAGGAGGCAGCGAACCCCTTCGAGTACGCAGATG
TGGTCACGACCACAACCCATAAGTCCCTCCGTGGACCCCGTGCCGGCCTG
ATTTTCTTCCGCAAGGACGACCGCAACTTCGAGGGGAGGATCAATCAAGC
CGTCTTCCCGGCGCTCCAGGGGGGGCCGCACGAGCACCAGATCGCCGGTG
TAGCCACGCAACTGAAAGAGGTCATGACTCCCGAGTTCAAGGAGTACGCG
ATCCAGGTGAAGAAGAACGCCCAGGCTATCGGGAAGGCGCTCATGGCCAA
GGGCTACAAGATGGCGACGGGCGGGACTGTCAACCACCTGGTTCTCTGGG
ACCTTCGGCCCCAAGGCCTGACGGGAAGCAAGATGGAGAAGCTTTGCGAT
GTCCTGAACATCACATTGAACAAAAATGCGGTAGTCGGGGACCGCAGCGC
TCTTACACCGGGAGGAGTCCGGATCGGAGCACCAGCCCTGACGAGCCGCG
GGTTTAAGGAGGCGGATTTCGAGCAGGTGGCTGATTTCTTGGACCGAGCC
CTGAAAATTGGCTTGAGAGTGCAGGCGGCATCGGGGCCCAAGCTGGTTGA
CTTTGCCAAGGCCGTGGCCGACGACGCCGAGGTGAAGGCCTTAAAGGCGG
AGGTGAACGCTTTCGCAAAGGGGTTTCCGATGCCCGGCATCGTCTAAGAA
AAAAATCGTCAGGCTACTTCTTTGGAGCTGATCGCCTCCGAGAACTTCAC
CTCCGCGGCTGTCATGGAGTGCCTGGGCTCCGTTCTGACGAACAAGATGG
CAGGGTCGGCCGGCGTGAAATGTGTCGTGATGACTCATCGTATCTCTTTT
CCGACAGGAACAACCTCAGCACACTCGCTTTCCTCGTCTACAACCATGTC
TCTTGCTCAAAACAAGTCTTTAAAGGAGCACGATCCTGTCTTGTACGACC
TTATTCAGCAGTACGCCGAGGGTCTGCCCGGCGCCCGCTACTACGGTGGC
AATGAGGTCGTGGATCAAGTGGAGAACTTGTGCCGCGACCGGGCCCTCCA
AGCCTACCGCCTCGACCCCGAGAAGTGGGGCGTGAACGTCCAGCCATACT
CCGGCAGTCCCGCCAACTTCGCGGTCTACACAGCCCTGCTACGGCCCCAC
GATCGTATCATGGGGCTGGATTTGCCCTCGGGGGGACACCTGACGCACGG
CTTCTACACCTACAACAAAGCCGAGGGCACGCGCAAGGCCGTGTCCGCTA
CCAGCATCTACTTCGAGTCCCTCCCTTACCGTGTGCACCCCGACACGGGC
CTCATCGACTACGACCAGATGGAGGTGAACGCGGCGCTCTTCAAGCCGGC
CATGATCATCTCCGGGGGCTCGGCCTACCCCCGCGAGTGGGACTACGCAC
GGATTCGCGCCATCGCGGACGCGAACGGATCCCTGATGATGGTCGACATG
GCCCACATTTCCGGCCTCGTTGCCGCACAGGAGGCAGCGAACCCCTTCGA
GTACGCAGATGTGGTCACGACCACAACCCATAAGTCCCTCCGTGGACCCC
GTGCCGGCCTGATTTTCTTCCGCAAGGACGACCGCAACTTCGAGGGGAGG
ATCAATCAAGCCGTCTTCCCGGCGCTCCAGGGGGGGCCGCACGAGCACCA
GATCGCCGGTGTAGCCACGCAACTGAAAGAGGTCATGACTCCCGAGTTCA
AGGAGTACGCGATCCAGGTGAAGAAGAACGCCCAGGCTATCGGGAAGGCG
CTCATGGCCAAGGGCTACAAGATGGCGACGGGCGGGACTGTCAACCACCT
GGTTCTCTGGGACCTTCGGCCCCAAGGCCTGACGGGAAGCAAGATGGAGA
AGCTTTGCGATGTCCTGAACATCACATTGAACAAAAATGCGGTAGTCGGG
GACCGCAGCGCTCTTACACCGGGAGGAGTCCGGATCGGAGCACCAGCCCT
GACGAGCCGCGGGTTTAAGGAGGCGGATTTCGAGCAGGTGGCTGATTTCT
TGGACCGAGCCCTGAAAATTGGCTTGAGAGTGCAGGCGGCATCGGGGCCC
AAGCTGGTTGACTTTGCCAAGGCCGTGGCCGACGACGCCGAGGTGAAGGC
CTTAAAGGCGGAGGTGAACGCTTTCGCAAAGGGGTTTCCGATGCCCGGCA
TCGTCTAAGAAAAAAATCGTCAGGCTACTTCTTTGGAGCTGATCGCCTCC
GAGAACTTCACCTCCGCGGCTGTCATGGAGTGCCTGGGCTCCGTTCTGAC
GAACAAGATGGCAGGGTCGGCCGGCGTGAAATGTGTCGTGATGACTCATC
GTATCTCTTTTCCGACAGGAACAACCTCAGCACACTCGCTTTCCTCGTCT
ACAACCATGTCTCTTGCTCAAAACAAGTCTTTAAAGGAGCACGATCCTGT
CTTGTACGACCTTATTCAGCAGTACGCCGAGGGTCTGCCCGGCGCCCGCT
ACTACGGTGGCAATGAGGTCGTGGATCAAGTGGAGAACTTGTGCCGCGAC
CGGGCCCTCCAAGCCTACCGCCTCGACCCCGAGAAGTGGGGCGTGAACGT
CCAGCCATACTCCGGCAGTCCCGCCAACTTCGCGGTCTACACAGCCCTGC
TACGGCCCCACGATCGTATCATGGGGCTGGATTTGCCCTCGGGGGGACAC
CTGACGCACGGCTTCTACACCTACAACAAAGCCGAGGGCACGCGCAAGGC
CGTGTCCGCTACCAGCATCTACTTCGAGTCCCTCCCTTACCGTGTGCACC
CCGACACGGGCCTCATCGACTACGACCAGATGGAGGTGAACGCGGCGCTC
TTCAAGCCGGCCATGATCATCTCCGGGGGCTCGGCCTACCCCCGCGAGTG
GGACTACGCACGGATTCGCGCCATCGCGGACGCGAACGGATCCCTGATGA
TGGTCGACATGGCCCACATTTCCGGCCTCGTTGCCGCACAGGAGGCAGCG
AACCCCTTCGAGTACGCAGATGTGGTCACGACCACAACCCATAAGTCCCT
CCGTGGACCCCGTGCCGGCCTGATTTTCTTCCGCAAGGACGACCGCAACT
TCGAGGGGAGGATCAATCAAGCCGTCTTCCCGGCGCTCCAGGGGGGGCCG
CACGAGCACCAGATCGCCGGTGTAGCCACGCAACTGAAAGAGGTCATGAC
TCCCGAGTTCAAGGAGTACGCGATCCAGGTGAAGAAGAACGCCCAGGCTA
TCGGGAAGGCGCTCATGGCCAAGGGCTACAAGATGGCGACGGGCGGGACT
GTCAACCACCTGGTTCTCTGGGACCTTCGGCCCCAAGGCCTGACGGGAAG
CAAGATGGAGAAGCTTTGCGATGTCCTGAACATCACATTGAACAAAAATG
CGGTAGTCGGGGACCGCAGCGCTCTTACACCGGGAGGAGTCCGGATCGGA
GCACCAGCCCTGACGAGCCGCGGGTTTAAGGAGGCGGATTTCGAGCAGGT
GGCTGATTTCTTGGACCGAGCCCTGAAAATTGGCTTGAGAGTGCAGGCGG
CATCGGGGCCCAAGCTGGTTGACTTTGCCAAGGCCGTGGCCGACGACGCC
GAGGTGAAGGCCTTAAAGGCGGAGGTGAACGCTTTCGCAAAGGGGTTTCC
GATGCCCGGCATCGTCTAAGAAAAAAATCGTCAGGCTACTTCTTTGGAGC
TGATCGCCTCCGAGAACTTCACCTCCGCGGCTGTCATGGAGTGCCTGGGC
TCCGTTCTGACGAACAAGATGGCAGGGTCGGCCGGCGTGAAATGTGTCGT
GATGACTCATCGTATCTCTTTTCCGACAGGAACAACCTCAGCACACTCGC
TTTCCTCGTCTACAACCATGTCTCTTGCTCAAAACAAGTCTTTAAAGGAG
CACGATCCTGTCTTGTACGACCTTATTCAGCAG back to top
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