rna1527, rna1527 (mRNA) Nannochloropsis gaditana

Overview
Namerna1527
Unique Namerna1527
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length10082
Alignment locationCM002457.1:866595..869194 -

Link to JBrowse

Properties
Property NameValue
Productserine hydroxymethyltransferase
Orig transcript idgnl|cribi|Naga_100007g45.6480.mrna
Orig protein idgnl|cribi|Naga_100007g45.6480
GeneSHMT2
GbkeymRNA
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:866595..869194 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
SHMT2gene1472Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1527rna1527-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29153.1cds1524Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1527 ID=rna1527|Name=rna1527|organism=Nannochloropsis gaditana|type=mRNA|length=10082bp
CGTGCCATGAAATTTTTAGGCTGCGGTTTGCCGGTGGAAAATAACAGTTG
TAGGAGGCGAGGATCGCGGAGGCGACCGGCAGCGTCCTTCCCGTTTTTTG
ATAACCTAGAGTAAATCTTTCTAATACTTGATATCTCTAACTTTGATGTT
TATACCTTTTTAAAGGAGGCCAGATCGAAAGGAATCGGGTGTCCTATCCA
TACAACGAACCAAACCCGCTCCACAAGCTGTTGCATTACCCTCCTCTCCC
TTGGGGGGGAATTAGGTGAAGGTGTCGCGCGCCGTTTGAGTTTTATATCT
GATACTTTTGTATCCTCTAGCTACTACTCCATCTACTAGAGGTTCTCTTC
CTCCCATAAGGCGTCACACAGCGAAAAGCGTTCATTTGAGAGTACAAATG
CCCTTAGACGAGCCCATTGCCGTGATTGGAGCCAGCATTGTCCTTCCCGC
CAATATCAACTCACGTGAGCGATTTTTCGAGATTATCCGTGAAAAGAATC
AAGTTTCTGTTGATACGGTGGCAGCAGGACGTTACCATGCGTCTGATATT
GACGACTCCGATTCTGGGCATCCTTGGAAACTCAAATCAAAGTACTCCAT
GATTTTCACAGAGGAAGAGCTGGGTAGTTATGATTCACACTTGTTCAATA
TCCAAGGGAAAGTCTCTCGCAATATGCATCTGCAGCAGCTTGGTGTATTG
CAGTCTGCCTTCGAGGGCTTAGAAGATGCCGGCATACCCCTTCATGACAT
CTATCGCACGCGCACGGGCATATTCGTGGCCGCATACACGGCCTTTTTGC
CTGCTTGTGACGGCCCTGACGAAACCCTCCTCCGAGGCCAGATCATGTCC
TCCCTTGCCGACCAGGTCTCCTATTTCCTGGGCACCTATGGACCCTCTGT
CACCCTTGAGACTGCCTGCTCCTCTTCTCTGGTGGCCATCGCCATGGCCG
TGGCCTCTCTGCAACAGGGAGACTGCGACACCGCGTTGGTGACGGGTTTG
AACTACTTGAACGAGAAAGACTTCCACCTCTCCCTCCAAGCCTGTGGCGT
CATGGTCCAAGGCCCCACGTCGCATCCCTTCGACGAGGACGGCGCCAAGG
GCTACATCCGCGGGGAGGGGATGGGTACCGTTGTCCTCCGCCGCATGGCC
GACGCTGAAAAGCATGGGGATCGGATCCTGTGCAAGGTCTTGCGGGCCAT
CGCCGCCTCGGCCGGCCCTGCAGACAATGCCCTTGAAGGTCCTGGCCGCG
TCTACGAGCAACCCTGCCCCTACGGGATGCGCGAGATGTTCAGCCGGGTC
TACAAGTGCGCGAATGTGCCTCTGGGGAAACTCCATTACATGGAGTGCCA
CGCCACGGGCACGGCGGTGGGTGACGTGATCGAGCTGCAGGCGATCGGGG
ATGTCTTCGGTGACTCCCACGAGTTGCGCAAGAATCCCTTGCGCATCGCC
TCGGTCAAATCCAATATTGGGCACGCCGAGGTCGCTGCCGGTATTTTTTC
AGTCATCAAGATTGTACAGATGATGAAGCACCGCACATTTTTGCCCTCAG
CGGGGGTGACATGCCCGCGCAAGGATTTCGAATGGGTCAAGCACAACATG
GTCATTCAGCAGGAATGCGAGCCCTTTCCTGACAACGAGCCCGTGACGGT
GGGGGTCAACTCCTTCGGCATCGGTGGCGCCTATGGCCACGTCGTCATGC
AGGAATACACGGGACCCGAACCTGTTCGACGTGCGCTCTTGACCTCTGCC
TCCTCCTTGTGGGCGCTCCCCGTAGAAGACGCGGCGGCCAAAGGCCTGGT
TTTCCCCCTCTCGGCAGTGAGCATGCCCCACCTTCAGCTCTTTGCGGACC
GCATGGCCAAGTATATCAAAGAGCGCGGCCCTACAATCAGCCTGAAAGAC
CTCTGCGCCACCATGTGGATCCACCGATCCCGGTTCCAGTACCGTAAGTC
TTTTGTCGCCTCCACGACACAGGAGCTCGCGGAGAAGCTGGCCGCATTTG
CATCCTCTGGTAACACGGAGCCATCTGGCGAAGGCCGAAAAATGCAAGTC
GCCTATGTCTTTACGGGGCAGGGCTCGCAGTGGCCCGGCGTGGGTAAGAC
ATTGATGGCATTCCCCGTCTACCGCAAGGCTGTCAAAGCGGCGGACAAGC
TCTTCAAGTCCAAGTCCGGCTGGTCCATCTTGGAAAAGATCGACACGCTG
AGCGCGGACGAGATGCGGGATACCCTTTACGCGCAACCCATCTCTTTTCT
GGTGCAGGTTGGCCTCTACGAGCTGTTGAAATTCTTCAAGGTCTTCCCCG
ACGTGGTCGTCGGACATTCCGCCGGGGAGGTGGCCGCTGCGTACGCCTCG
GGCTTGCTCACCCTGGAGGAGGCTTGCGAGGTCGTATACCACCGATCCGC
CGAGCAGCAGAAGATGGCAGGCTGTGGGCGCCTCATGGCAGTGGGTTTGA
GCGAAGAAAAAATCCAGGACATCATCCGCGGCATGGCGGACGTGGAGATT
GCATGCGTGAACTCTCCTGAGTCGGTGGTCCTGGCATCGTCCGAGGAGCG
TCTCAAGGAGGTGGGAGAGCTCCTGCCCGAGGGGACACAGAAGGCAATGG
TCCCCGGGAACATCGCTTTCCATTCCTCCCGCGTGGAGCCCATCTTGCCT
GCTATGAAGGCGCGTCTGGCCTTCTTGGACAAGCGCCCCAAGACCTGGGG
TCTGCCGTATGTCTCCGCCGTCACGGGCAAGCTCGAATCTAAACTGGATT
CCGACTACTGGGTCGACAACGTGCGCCGCCCCGTGCTCTTCCAGAAGGCC
ATCGAGACCATCTTCTCCCAGGACACCGGCCCGGACATTGTGATCGAGAT
TGGTCCCCACAAGACGCTTTGCTCCCCCATTGCCCAAGTCTTGAGCGCCA
TGGGCAAGTCCGCAGCCATTCTTTGCCCACTCAAGAGGAACGACACATGC
TCAATGCGTTTTTTGGAGGCGCTTGGCCAGATGTTTGAAAAGGGTCTGTC
GGTGGACTGTAAACAGTGGTATCAGGATTTAGGATACGCTTTCGACGAGG
ATCTTCCTAAGCATCCCTTCATCAAAAGACGCCTGCACGAACTACACCCG
GTGCTCAAAAACGATATGCGCAACGGCTTGTACATCGACGGGCCTGTAGC
TGGCGTTCAGAAATTTTTCGACGGTGCATACGTGAGTGAGGTCTCGGACC
GTACCTACAAGCAAATGTGCGACCACAAGATGGGCGGTCAGGCCATTTTC
CCTGGAATGTTCTTCGTCGAGATGGTCCTGGAGGCCGTCAAGGGCGCCCC
GATCACCCTTACCAACGTGGAATTCAAGAGCATGCTTAAGATCCCCTCTG
CCAGCTCTGGTGAGAATCCGTCCCTGATCGCACTGAACTTTGCGGAGGAG
CAGGACGGCATCCGGTCTTTCGTGGTGCGATCCTGCCCGACGCGTGAGAA
GTGGGACGAGGAGCCCGTGCTGGTGGAACACTGCACAGGGAAAGTGGTCA
AAGCTGACCTTCTAAACGAGGATGGCAGCATTAAAGACGGTTTTAAGCCC
GAGGCCTACGGCCTGCTGGCAGGTTTGGAGCTCAAGGATATTGGCGACGG
AGGTCTGAAAGACCTGATCGGGCGCCACACCCAGTGCGAGCATAGCAGCA
CCGAAAACTTTTACGGCACCCATTGCGTGGAGGGTCAGATGGAATACTTG
GAGTCCTTCCAACTCGTGGAAAGCGTGCACGTCGATCCCAAGACGATGAG
CATCCTGGGCAAGCTCAACTACGACAACGAGGCCTGGGAGAAGAAGGGTG
GCATCTTCGGGGTGCAGCTCCTTGACGCGCTCCTGCATCAGACCCTCATC
TTGGCCACGCACTCGGCCATCTACTACGCCGGTGGCTTCGACGCTTGCCA
CTTTTTGCGACAGCCCGCTACCAAGGAGCTCTACGTCTATTTCACGTTGG
ACAAGTACCGCCTCCAGATTGGCCGCAAGAAGAAGGTGGGGGACTTTGCT
CTGTATGACGGAACGGGGCGACTGATTTTATACATGCAGGGATTCTATAC
AGTTTTTGCTTCCTTTTCGGACAATTACAAGCTTTGTGACTTACTTTGGC
AACCTTTCGCGGCACCAATGCCTCCACCAGCGAACGAACTCATTGCCTAT
AGCGAAGAGGCCCTGGCGCACACTGCAGATTGGACGAGCAGTGATAACAG
CTGTATGACTGCCTGGCTTGTGGAGAGGCTCCGTTCTAACGGTGCTCTCG
AGTTACCCCCCCCTGTTGGCGATGCGCATGCTAACAAGTCAAGAAAAGTC
AAAGAAGTTGTGCCACTCGTCCGCAAAGTCCTTGAGGCGCTTGAAGCGCG
CTTATCCGAGGTCCACGACTCTGCCATCACAGATAAGGTTCCTGCAATAC
CCAAAGTTGCGAACTTACATGAACGGCCTGAGGAGCTTGTGAAGACGCTC
ACTCTCAAGATTCAAGAGAAGAAGGTGCCCGCTGCCGAGGAAGGAGGCGC
GGACCTAGTCGAACTTACAGCCGACGAGATTAAGGAATTAGTTGCGACGT
CTGTCCAGCGGTCTGCAGAAACTGCTACTGTAGCAGCTGCCCTGAAAGCT
CAGATGGAGGCACAGCTAAGACTTCTGGGGCATAATTGTGTGTTTCGCGT
TTTTGAGATTACGCAAGAGGCTACCGAAACAGTAGTCGAGGCCCTCTCGC
GACTTGAATTGCCAGCACATATCATTGTCGAGTACTTTGTAGGGTCTCAC
AATTCAGGTCTATTGAAATCATTGGCAACGAAAATAAATCGTCGTGCCAC
GAACATTAGGCTACGACGTGTGTTGATCAACGACATGCTCTTTAATGAGA
TCAAGGACATTACTTTCGAGGCCGTGGTCTTTGATGAATGGACACGCTCT
GGTGCGGCTGCTTATGCGGAGGGTAGATTCGAAAGCCCTGCGGCCAATGC
GTTGGAAGCTTTGAGGACCTTTATGATGCCCGGTGCCCCTGTCTTTGTTC
GTGGCCTTTATGATCTTCCCTTGTGGGTGCCCCTCATATCGTTGGCATCG
GCGTCACAGTTGCCGCTGATAAACACCCTCTCGGCGGAAGAAGCTGTGGC
TGACTGGACACAGCAACTGCTTGCTCATGGTAAGGTGTATAGTACGGAGG
TCGGAGCCACTTGCGTCCTCATTGGGGAGCAGGGTCCTGCTTTGCCTAGG
GCTCCAAGCCGCTATCTATTGTTTGTTGACAAACAAAGTCATGGCGAGGA
ATTTGGAAGGCTTTTGAGGCTTGATCACGCCCTCGCAGAAGCTGAAGTTG
TTTTGGTGGGAGAATCTGGTCAATTGACAGATGAATCGACGGCGGACGAT
TATGCCGCTCTTCTTGCAAAGGTTTTGGCCCCTCAGACTGGCGAAGAACT
ACCCGAGGGCGACGATATCGCCCACGAGGAGGAAGAGATACCCAACGGCA
CCCCTTTCAAGGGCGTCATTTTCTTTGCGGGCCTCCATGATACCAGCGTC
ATAGGTGACGTTGCTTTCAGCCGTCTTCTCAAGCTTGCGCAGGGGCTTCT
TAAAAATGGTGACTTGCTGAAGACACTTCGCGGCAGCGAGCTCGCTGAGC
CCAATAGTCTATGGGTAATTACTAAGGGGGCCTATGTTGGAGATGTATGT
CCAGCCCAGGGAACGGTACAGGGTTTAGCCACTGTCCTTTGCGGTGAACT
CCCCGACATGGTTACAAAACATGTGGATCTAGCCTCCAGCAATAGTAAGG
ACATGAGGTGCCTTTCCAAGCTGGTGGTGGAGGACAGTCGCGAGAAATCC
TATACCGTTATGAATGGCGCTGCACAGGTGGCTCGCTTTAATGCCATGGA
CAAAACAAATGCTCGCGCGATGCAAGTCCTGGCCACTGACCCGAAACTGA
GCTACTTTGCAGACATCACATCGGCGGCGTCAGTGCCTGGCGAGATCAAT
GTCACGTATCAATTACGCGATGTACCCCCACCAAAGGAAAATGAGGTCCA
GATTGATATATGTGCCGCAGCCTTGAACTTCCGCGATGTGATGATTGCCT
TATCCTTGTTACCAGAGAAGTCCTACGAGCGCTCCTATTACGGCCGTAAC
TTGGGGCTCGAGGCCTCAGGGGTGGTATCGGCTATCGGCAGGGATGTCAA
AGATTTGAAGGTGGGAGATCGCGTCATGACTGGCGAGCCCCGCTGCTTCG
CGAATCGACTGAATGCGCCGGCCTCCCGTGTGGTGAAGCTGGACCAACGT
GTTCCGTTCGAGGATGCGGCGTCCCTGCAGTCCGTGTACAACACGTCCCA
CCACGCCCTTATCAACTTGGCGCGCATCCGTAAGGGTGAGACTGTGCTCA
TACACTCCGCTGCGGGTGGCATTGGTCATGCAGCCATTTCCATTGCGAAG
CACGTGGGCGCTGTCATCCACGCCACGGCCGGCACGGACGAAAAGCGACA
GCTGGTCAAGGACATGGGAGTGGAGTTTGTCTACAATTCTCGCAACGTGG
GATGGTTTGACGACCTGATGCGGGACACAAATGGCCAGGGTGTGGACGTG
GTCCTCAACTCTCTGGCGGGCAAGCACCAGCGCCTCGGTGTGCAAGCGCT
ACGCTCTTCTGGTCGCTTTTTGGAAATCGGTAAGATGGATATCTTCGACA
ACAACGGCTTGCCTCTACTGGCCTTCCGAAAGAACATCTCCTTCTTCGCC
ATTGACATGGACCGCTTGGCCCTGGACGACCCTGCCCAGACCGCTGAGAT
CGGCCGGGAGGTGGGCATGCACTTCATGGAGGGGCACTACGACAAGCTGC
CGATCGTGACTTTCCCCATGAATGAGATAAAAGAGGCCCTGGAGTTCATG
AAAACCGGCAAGCACGTGGGCAAGGTAGTGCTCACCAACTACCTGGAAGA
CAAGAAGACGGGGAAAGTTAGCCCCTGCTCTGTTACCGTGGAGAAGCCCC
AAAACATCTTCCACGCCGATGCTACTTACCTGGTGACGGGCGGTGCCGGT
GGCTTCGGCTCCAAGCTGGTGCGGTACGCGTACTACAACGGGGCCCGCAG
CTTTTTGATCACCACCCGCTCCGCGGACACGGAGAAAGTGCGAGGGTTGT
TCCGGGACATCTTGGACGACGCCTCCGTCAAGATGGAGGTCATGACTGTG
GACACGGGCAGCGAGGCTGACATGAAAAAGCTCACGGACCGTGCCCACGG
GATTTCCCCTCCGGTCAAATCCATATTCCACGTGGCCGGCGTGAGCGTCG
ACATCGTGCTCCCGGAGATGAAACCCGAAAATTTCTATGAGGTGGCCAAC
TGCAAAGCTCTTGGTGCCTGGCATCTGCACAAGGGGACACTGGACCTGCC
TATTGAGAACTTCGTGGTCGTCTCCTCGATCGCGTCCCTCATCGGTGGCC
TGGGCATGTCTTCCTATGCCTCCTCCAACGCCTACCTGGACGCCTTGATG
CGCGCCCGCCGCTCCCAGGGTCTTCCCGGCGCCGCCTTCAACATGTCCTC
GCTCTCGGACGTGGGCATCCTCGCCAACAACCTGAGCGCCCGCAAGTTCC
AGCTGAAGATGGGTGTCGAATACATCACCTCCTTCCGTGCGCTGCAGGAG
CTGGAGATGGGCCTGGTGGCCGGCATGAACCCGATCATCACCATGTTCTT
CAAGGAAAAGACTCGCACCATGTTCCCCTTCCAGTCTCCCTGGTCCTACC
ACCTGGGCGAGGCTTTGACGCTGGGTGCCGTCGCCGCCAAGGGCGATTTC
ATGACCACCAAGGAGATTGCCCATTTCTTGTCGGAGGAAATCAAGGAGAT
CACGGGCGCGTCCGAGGTACTGGTTACGTCCCAGCTTGTAACATTGGGCT
TGGATTCCTTCGGTTTCGTGGAGCTGGGAGGACGCATCAAGAAGCACTTT
GGTATCGAGGTCAGTTCGGTCAAGATGAGCCCCGACAATACCTTGGAGGA
CGTTTCCAAGATCATTTACAAGCTACAATCTCGCGGATCCAACGATAAAA
AGGGTGGGGAGACCGCAGACGAGAATGACAACCATGAGGAGATGATGGTT
CTCCATAACAAGGCGGAGATGAACAGCATGCTCGCTACGCTCTTCGAGGA
GGACGATGACGCCGCCAATAATCACAAGGCCTTCCACTTGCGTCCTCTAA
CGTCCAGTGCCAAGCTTTTGTTCGGTGCCACTGGACTTACGGGCTCTCAT
TTGCTCCGTTACATGATTAAAGCAGGCGTACCGAAAGTCTTCTGCATAGT
ACGCGGCTCTACATCTGAGGGTGGTCTCGCCCGTATCGAAAAGACAATGC
GGCTGCTGAAAATATGGAAGCCAAGTTTTGCTGCGAATATCGTTGTCATC
CCGGGCGATATGGCTCTTACAAATTTTGGGATAAAGCCGGACATGTATGC
CCGCTTGGTGCATGAAGTTGACGCAGTGATGCACGCAGGAGGGTCCCGTA
AATGGCACATGGACACAGAGTCCGTGGCATGCAACATCTCGGGGCTCATG
AACATCATCACGCTTGCCCGTAAAAATAACGCCAGTGTGCACTACGTGTC
TTCTGGATGGCTGGACGCAGAGGAGGCAGCCACCGAATCGGACCGAGCCA
TTCTGCGGGGCATGCCTTATGTGCAGATCAAGCGCCGAGCAGAGGACATC
CTCCACTTTGCCGCACGGCACTATAAGCTTGCCTGTTTCGCTTATCGGAT
CCCGCTTATTTCAGTCAACACCAAATGCGGCTTCACTGGTGATTTTGTTG
CCTTCTCCGTCATGCAGACTTTGTATGAAAGTCGCATGATGCCAAAAGAC
ATGTGCGAGAGCAGCTGCTACCCTATCATGCCTGCGGATTTGGCCGCTAA
ATATGTCGTACGCCAAATGAGCCGCGCCCCTCGTAAAACTAACGGGAAAG
CCTTACTATACTCAGCATCAGCTTTCTCTGAAATTGTTTCCACTGAAAAA
TTGGCGGAGTGGGTAGAAGAGCTAAAGAATGTCAAAATCAGTCGCACAGC
AACCATGGAGCAAGTGAAAGAACACTACGCCAAGCGCCTGGTCAACGAGG
TCCAGGATATGCAAGCATCATTTACAGATTTCTTAGTAGCTCTTGGCCGG
GCCTCGGAGCGCCTTCGACTGCAGGTCCGTCGAGAATCCTCTCTTCGGTT
CCTTGTGGACAAAGCCTTGTACTTCAACACCAAAGTCCCTCCCTCTGAGC
TCCTGAGGGATTATATCAAAAATCACCCTGAAGTGTTGCTCATGGAGCAA
GCATGGTTTGTAGATGGAGAGGAAGACGAAGGAAGGGATGCGGAGGAAGG
CCCAGGCAAAGACCACCCGGCTGAGAAGGACGTGGCCTGAATCGCGCTGG
TCCAACCCAGCAATAGCAAATAAGACAGGTATAAAGCTTTATGCCGACAT
GAAGGAAGACTTAGCCAGTCGATGGCATTTTTCAGTGATATGATAAAAAT
GGAAATGATTTTTTGGGCAACCAATGCATCCACATCGTATGAAGAGTCCT
GCTTCTGAAGCACACACCGATTTCCAACAAAAGTAGTGAGATAAGAACGA
GGGTTATTTGTTGCGTGAGAAAAAGGATGGACTAGGATTATCAAATGTAG
AGATAAGGATCAAGAAAGTAACGCCATGAATGAAGGGAGGTACAAAGGAA
CGGTCAGGTGTCGATATCAGTCGTTTGGTTCCCCATCTACTCTCGTCTGA
GTGTGCAACTACCACTGAAAGAGAGAGAGCTGCGAGATCCTCGTGCAATA
AAATGGGCCGTGAGAAGCGCGATATTAAAATAAAGCACGAACATGAAGGG
CAGGCTGGACATGACCAGTGCAAGAGAGTGTGGGTACAGTACGAGGAAAA
TGGCAGTGTCTTTGAGAGATCACGCGCCATTGATCCTTCTTTACAACGCG
GCTCTAATGCGCAAACAATTAAGATAGATCAAAGAAAAGACAAAATCCGC
AACAACTCGAGGACGCATCCGACAAAGCTTGCTTCATCTTATATTTAGAA
GCTCTGTATGCTAAGCATGCAATGCAAGTGACCTCAAGAGAAGGGATCCG
TTTGACACAATCGATGGCTAAGAAATGTTCCC
back to top

protein sequence of rna1527

>rna1527-protein ID=rna1527-protein|Name=rna1527|organism=Nannochloropsis gaditana|type=polypeptide|length=470bp
MAPDGTTSAHSLSSSTTMSLAQNKSLKEHDPVLYDLIQQEKNRQATSLEL
IASENFTSAAVMECLGSVLTNKYAEGLPGARYYGGNEVVDQVENLCRDRA
LQAYRLDPEKWGVNVQPYSGSPANFAVYTALLRPHDRIMGLDLPSGGHLT
HGFYTYNKAEGTRKAVSATSIYFESLPYRVHPDTGLIDYDQMEVNAALFK
PAMIISGGSAYPREWDYARIRAIADANGSLMMVDMAHISGLVAAQEAANP
FEYADVVTTTTHKSLRGPRAGLIFFRKDDRNFEGRINQAVFPALQGGPHE
HQIAGVATQLKEVMTPEFKEYAIQVKKNAQAIGKALMAKGYKMATGGTVN
HLVLWDLRPQGLTGSKMEKLCDVLNITLNKNAVVGDRSALTPGGVRIGAP
ALTSRGFKEADFEQVADFLDRALKIGLRVQAASGPKLVDFAKAVADDAEV
KALKAEVNAFAKGFPMPGIV
back to top

mRNA from alignment at CM002457.1:866595..869194-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1527 ID=rna1527|Name=rna1527|organism=Nannochloropsis gaditana|type=mRNA|length=2600bp|location=Sequence derived from alignment at CM002457.1:866595..869194- (Nannochloropsis gaditana)
ACTCCCGTATTTGGTCTTGCGATTGCGATGGCTCCAGACGGTGAGGCTTT ATGTTGTTGTGTTGAGTTCCCAGACGTCCGTCTGACGTGATGAGACGCTC TGATGTCAGAGCGGTATCTTGGGAGATAAGATTAGCCGGCACGCGGAGAC GGCGCGGCGATTAATGGACTCTGCGGGCGATGCACTTGGGTATTCAAGTG GTGCATTCTCAGTGGACGTGTCAGCCGTTTTTGAAGCATTGGACTTTCTC CAAGCCAACTTGCCATGTATTGCAGAGGCTTATCTTGCACCGATGAGATG CTCAGACCATTTCCACCATTATGGCAGGGTCGGCCGGCGTGAAATGTGTC GTGATGACTCATCGTATCTCTTTTCCGACAGGAACAACCTCAGCACACTC GCTTTCCTCGTCTACAACCATGTCTCTTGCTCAAAACAAGTCTTTAAAGG AGCACGATCCTGTCTTGTACGACCTTATTCAGCAGGTAAAGTAGGAGGGT GGGAATGTGGCGTACGTTTCAGAGCCGAGTGCACGATCAGACCGGCTGCG CGATAGGACTTGCGTGTGAGTGTGATTACAGTCTTTCCTGTCTCCATGCG AGCCCTCCCTTACTCTCTTCATTTCATGGTAGAAAATAAAAATCACTGAC ACGTTGGCATATTCCATATCAGGAAAAAAATCGTCAGGCTACTTCTTTGG AGCTGATCGCCTCCGAGAACTTCACCTCCGCGGCTGTCATGGAGTGCCTG GGCTCCGTTCTGACGAACAAGGTGAGCTCGGATGTCCATGTAAAAGTTTC AGTCGGTGTACCTATAGGAAGTCTTGCTTTATAACAGCGCGACCTTCGGC CCAGGCTCTTCGCCTTGTTGGCAGCGCAAATACAGCTCACCCACAAGCAT ACTTTTTCCCCCCCTCCAATTCTCTAGTACGCCGAGGGTCTGCCCGGCGC CCGCTACTACGGTGGCAATGAGGTCGTGGATCAAGTGGAGAACTTGTGCC GCGACCGGGCCCTCCAAGCCTACCGCCTCGACCCCGAGAAGTGGGGCGTG AACGTCCAGCCATACTCCGGCAGTCCCGCCAACTTCGCGGTCTACACAGC CCTGCTACGGCCCCACGATCGTATCATGGGGCTGGATTTGCCCTCGGGGG GACACCTGACGCACGGCTTCTACACCTACAACAAAGCCGAGGGCACGCGC AAGGCCGTGTCCGCTACCAGCATCTACTTCGAGTCCCTCCCTTACCGTGT GCACCCCGACACGGGCCTCATCGACTACGACCAGATGGAGGTGAACGCGG CGCTCTTCAAGCCGGCCATGATCATCTCCGGGGGCTCGGCCTACCCCCGC GAGTGGGACTACGCACGGATTCGCGCCATCGCGGACGCGAACGGATCCCT GATGATGGTCGACATGGCCCACATTTCCGGCCTCGTTGCCGCACAGGAGG CAGCGAACCCCTTCGAGTACGCAGATGTGGTCACGACCACAACCCATAAG TCCCTCCGTGGACCCCGTGCCGGCCTGATTTTCTTCCGCAAGGACGACCG CAACTTCGAGGGGAGGATCAATCAAGCCGTCTTCCCGGCGCTCCAGGGGG GGCCGCACGAGCACCAGATCGCCGGTGTAGCCACGCAACTGAAAGAGGTC ATGACTCCCGAGTTCAAGGAGTACGCGATCCAGGTGAAGAAGAACGCCCA GGCTATCGGGAAGGCGCTCATGGCCAAGGGCTACAAGATGGCGACGGGCG GGACTGTCAACCACCTGGTTCTCTGGGACCTTCGGCCCCAAGGCCTGACG GGAAGCAAGATGGAGAAGCTTTGCGATGTCCTGAACATCACATTGAACAA AAATGCGGTAGTCGGGGACCGCAGCGCTCTTACACCGGGAGGAGTCCGGA TCGGAGCACCAGCCCTGACGAGCCGCGGGTTTAAGGAGGCGGATTTCGAG CAGGTGGCTGATTTCTTGGACCGAGCCCTGAAAATTGGCTTGAGAGTGCA GGCGGCATCGGGGCCCAAGCTGGTTGACTTTGCCAAGGCCGTGGCCGACG ACGCCGAGGTGAAGGCCTTAAAGGCGGAGGTGAACGCTTTCGCAAAGGGG TTTCCGATGCCCGGCATCGTCTAAGTGCTCGAGCACGCGCGTTTTACCAC TTATAGAAAGACAGGCGTATTGAGAGATCCTGGCTATGGTGATTGGAGGA AGAAAAGATGGGAAAGGGGCCGTCGAGGAACGGATACGTGACAGCATTGC CACGATTTTCTCCAAGGATAGTAGGTGTAGTCACCCGGACAGTATATGTC TAAGTTACTGGTACCGAGGAATGGCGGAAACGACGATCTACGAAATCCTG TATCTCCAACGTTTGGGATGGAAGTAAAAGGGCATGGCAAGAACGTGTAC ACCACGTGTGGAAGAGGGAACATTTCTTAGCCATCGATTGTGTCAAACGG ATCCCTTCTCTTGAGGTCACTTGCATTGCATGCTTAGCATACAGAGCTTC TAAATATAAGATGAAGCAAGCTTTGTCGGATGCGTCCTCGAGTTGTTGCG GATTTTGTCTTTTCTTTGATCTATCTTAATTGTTTGCGCATTAGAGCCGC
back to top

Coding sequence (CDS) from alignment at CM002457.1:866595..869194-

>rna1527 ID=rna1527|Name=rna1527|organism=Nannochloropsis gaditana|type=CDS|length=5652bp|location=Sequence derived from alignment at CM002457.1:866595..869194- (Nannochloropsis gaditana)
TACGCCGAGGGTCTGCCCGGCGCCCGCTACTACGGTGGCAATGAGGTCGT
GGATCAAGTGGAGAACTTGTGCCGCGACCGGGCCCTCCAAGCCTACCGCC
TCGACCCCGAGAAGTGGGGCGTGAACGTCCAGCCATACTCCGGCAGTCCC
GCCAACTTCGCGGTCTACACAGCCCTGCTACGGCCCCACGATCGTATCAT
GGGGCTGGATTTGCCCTCGGGGGGACACCTGACGCACGGCTTCTACACCT
ACAACAAAGCCGAGGGCACGCGCAAGGCCGTGTCCGCTACCAGCATCTAC
TTCGAGTCCCTCCCTTACCGTGTGCACCCCGACACGGGCCTCATCGACTA
CGACCAGATGGAGGTGAACGCGGCGCTCTTCAAGCCGGCCATGATCATCT
CCGGGGGCTCGGCCTACCCCCGCGAGTGGGACTACGCACGGATTCGCGCC
ATCGCGGACGCGAACGGATCCCTGATGATGGTCGACATGGCCCACATTTC
CGGCCTCGTTGCCGCACAGGAGGCAGCGAACCCCTTCGAGTACGCAGATG
TGGTCACGACCACAACCCATAAGTCCCTCCGTGGACCCCGTGCCGGCCTG
ATTTTCTTCCGCAAGGACGACCGCAACTTCGAGGGGAGGATCAATCAAGC
CGTCTTCCCGGCGCTCCAGGGGGGGCCGCACGAGCACCAGATCGCCGGTG
TAGCCACGCAACTGAAAGAGGTCATGACTCCCGAGTTCAAGGAGTACGCG
ATCCAGGTGAAGAAGAACGCCCAGGCTATCGGGAAGGCGCTCATGGCCAA
GGGCTACAAGATGGCGACGGGCGGGACTGTCAACCACCTGGTTCTCTGGG
ACCTTCGGCCCCAAGGCCTGACGGGAAGCAAGATGGAGAAGCTTTGCGAT
GTCCTGAACATCACATTGAACAAAAATGCGGTAGTCGGGGACCGCAGCGC
TCTTACACCGGGAGGAGTCCGGATCGGAGCACCAGCCCTGACGAGCCGCG
GGTTTAAGGAGGCGGATTTCGAGCAGGTGGCTGATTTCTTGGACCGAGCC
CTGAAAATTGGCTTGAGAGTGCAGGCGGCATCGGGGCCCAAGCTGGTTGA
CTTTGCCAAGGCCGTGGCCGACGACGCCGAGGTGAAGGCCTTAAAGGCGG
AGGTGAACGCTTTCGCAAAGGGGTTTCCGATGCCCGGCATCGTCTAAGAA
AAAAATCGTCAGGCTACTTCTTTGGAGCTGATCGCCTCCGAGAACTTCAC
CTCCGCGGCTGTCATGGAGTGCCTGGGCTCCGTTCTGACGAACAAGGAAC
AACCTCAGCACACTCGCTTTCCTCGTCTACAACCATGTCTCTTGCTCAAA
ACAAGTCTTTAAAGGAGCACGATCCTGTCTTGTACGACCTTATTCAGCAG
ATGGCTCCAGACGTACGCCGAGGGTCTGCCCGGCGCCCGCTACTACGGTG
GCAATGAGGTCGTGGATCAAGTGGAGAACTTGTGCCGCGACCGGGCCCTC
CAAGCCTACCGCCTCGACCCCGAGAAGTGGGGCGTGAACGTCCAGCCATA
CTCCGGCAGTCCCGCCAACTTCGCGGTCTACACAGCCCTGCTACGGCCCC
ACGATCGTATCATGGGGCTGGATTTGCCCTCGGGGGGACACCTGACGCAC
GGCTTCTACACCTACAACAAAGCCGAGGGCACGCGCAAGGCCGTGTCCGC
TACCAGCATCTACTTCGAGTCCCTCCCTTACCGTGTGCACCCCGACACGG
GCCTCATCGACTACGACCAGATGGAGGTGAACGCGGCGCTCTTCAAGCCG
GCCATGATCATCTCCGGGGGCTCGGCCTACCCCCGCGAGTGGGACTACGC
ACGGATTCGCGCCATCGCGGACGCGAACGGATCCCTGATGATGGTCGACA
TGGCCCACATTTCCGGCCTCGTTGCCGCACAGGAGGCAGCGAACCCCTTC
GAGTACGCAGATGTGGTCACGACCACAACCCATAAGTCCCTCCGTGGACC
CCGTGCCGGCCTGATTTTCTTCCGCAAGGACGACCGCAACTTCGAGGGGA
GGATCAATCAAGCCGTCTTCCCGGCGCTCCAGGGGGGGCCGCACGAGCAC
CAGATCGCCGGTGTAGCCACGCAACTGAAAGAGGTCATGACTCCCGAGTT
CAAGGAGTACGCGATCCAGGTGAAGAAGAACGCCCAGGCTATCGGGAAGG
CGCTCATGGCCAAGGGCTACAAGATGGCGACGGGCGGGACTGTCAACCAC
CTGGTTCTCTGGGACCTTCGGCCCCAAGGCCTGACGGGAAGCAAGATGGA
GAAGCTTTGCGATGTCCTGAACATCACATTGAACAAAAATGCGGTAGTCG
GGGACCGCAGCGCTCTTACACCGGGAGGAGTCCGGATCGGAGCACCAGCC
CTGACGAGCCGCGGGTTTAAGGAGGCGGATTTCGAGCAGGTGGCTGATTT
CTTGGACCGAGCCCTGAAAATTGGCTTGAGAGTGCAGGCGGCATCGGGGC
CCAAGCTGGTTGACTTTGCCAAGGCCGTGGCCGACGACGCCGAGGTGAAG
GCCTTAAAGGCGGAGGTGAACGCTTTCGCAAAGGGGTTTCCGATGCCCGG
CATCGTCTAAGAAAAAAATCGTCAGGCTACTTCTTTGGAGCTGATCGCCT
CCGAGAACTTCACCTCCGCGGCTGTCATGGAGTGCCTGGGCTCCGTTCTG
ACGAACAAGGAACAACCTCAGCACACTCGCTTTCCTCGTCTACAACCATG
TCTCTTGCTCAAAACAAGTCTTTAAAGGAGCACGATCCTGTCTTGTACGA
CCTTATTCAGCAGATGGCTCCAGACGTACGCCGAGGGTCTGCCCGGCGCC
CGCTACTACGGTGGCAATGAGGTCGTGGATCAAGTGGAGAACTTGTGCCG
CGACCGGGCCCTCCAAGCCTACCGCCTCGACCCCGAGAAGTGGGGCGTGA
ACGTCCAGCCATACTCCGGCAGTCCCGCCAACTTCGCGGTCTACACAGCC
CTGCTACGGCCCCACGATCGTATCATGGGGCTGGATTTGCCCTCGGGGGG
ACACCTGACGCACGGCTTCTACACCTACAACAAAGCCGAGGGCACGCGCA
AGGCCGTGTCCGCTACCAGCATCTACTTCGAGTCCCTCCCTTACCGTGTG
CACCCCGACACGGGCCTCATCGACTACGACCAGATGGAGGTGAACGCGGC
GCTCTTCAAGCCGGCCATGATCATCTCCGGGGGCTCGGCCTACCCCCGCG
AGTGGGACTACGCACGGATTCGCGCCATCGCGGACGCGAACGGATCCCTG
ATGATGGTCGACATGGCCCACATTTCCGGCCTCGTTGCCGCACAGGAGGC
AGCGAACCCCTTCGAGTACGCAGATGTGGTCACGACCACAACCCATAAGT
CCCTCCGTGGACCCCGTGCCGGCCTGATTTTCTTCCGCAAGGACGACCGC
AACTTCGAGGGGAGGATCAATCAAGCCGTCTTCCCGGCGCTCCAGGGGGG
GCCGCACGAGCACCAGATCGCCGGTGTAGCCACGCAACTGAAAGAGGTCA
TGACTCCCGAGTTCAAGGAGTACGCGATCCAGGTGAAGAAGAACGCCCAG
GCTATCGGGAAGGCGCTCATGGCCAAGGGCTACAAGATGGCGACGGGCGG
GACTGTCAACCACCTGGTTCTCTGGGACCTTCGGCCCCAAGGCCTGACGG
GAAGCAAGATGGAGAAGCTTTGCGATGTCCTGAACATCACATTGAACAAA
AATGCGGTAGTCGGGGACCGCAGCGCTCTTACACCGGGAGGAGTCCGGAT
CGGAGCACCAGCCCTGACGAGCCGCGGGTTTAAGGAGGCGGATTTCGAGC
AGGTGGCTGATTTCTTGGACCGAGCCCTGAAAATTGGCTTGAGAGTGCAG
GCGGCATCGGGGCCCAAGCTGGTTGACTTTGCCAAGGCCGTGGCCGACGA
CGCCGAGGTGAAGGCCTTAAAGGCGGAGGTGAACGCTTTCGCAAAGGGGT
TTCCGATGCCCGGCATCGTCTAAGAAAAAAATCGTCAGGCTACTTCTTTG
GAGCTGATCGCCTCCGAGAACTTCACCTCCGCGGCTGTCATGGAGTGCCT
GGGCTCCGTTCTGACGAACAAGGAACAACCTCAGCACACTCGCTTTCCTC
GTCTACAACCATGTCTCTTGCTCAAAACAAGTCTTTAAAGGAGCACGATC
CTGTCTTGTACGACCTTATTCAGCAGATGGCTCCAGACGTACGCCGAGGG
TCTGCCCGGCGCCCGCTACTACGGTGGCAATGAGGTCGTGGATCAAGTGG
AGAACTTGTGCCGCGACCGGGCCCTCCAAGCCTACCGCCTCGACCCCGAG
AAGTGGGGCGTGAACGTCCAGCCATACTCCGGCAGTCCCGCCAACTTCGC
GGTCTACACAGCCCTGCTACGGCCCCACGATCGTATCATGGGGCTGGATT
TGCCCTCGGGGGGACACCTGACGCACGGCTTCTACACCTACAACAAAGCC
GAGGGCACGCGCAAGGCCGTGTCCGCTACCAGCATCTACTTCGAGTCCCT
CCCTTACCGTGTGCACCCCGACACGGGCCTCATCGACTACGACCAGATGG
AGGTGAACGCGGCGCTCTTCAAGCCGGCCATGATCATCTCCGGGGGCTCG
GCCTACCCCCGCGAGTGGGACTACGCACGGATTCGCGCCATCGCGGACGC
GAACGGATCCCTGATGATGGTCGACATGGCCCACATTTCCGGCCTCGTTG
CCGCACAGGAGGCAGCGAACCCCTTCGAGTACGCAGATGTGGTCACGACC
ACAACCCATAAGTCCCTCCGTGGACCCCGTGCCGGCCTGATTTTCTTCCG
CAAGGACGACCGCAACTTCGAGGGGAGGATCAATCAAGCCGTCTTCCCGG
CGCTCCAGGGGGGGCCGCACGAGCACCAGATCGCCGGTGTAGCCACGCAA
CTGAAAGAGGTCATGACTCCCGAGTTCAAGGAGTACGCGATCCAGGTGAA
GAAGAACGCCCAGGCTATCGGGAAGGCGCTCATGGCCAAGGGCTACAAGA
TGGCGACGGGCGGGACTGTCAACCACCTGGTTCTCTGGGACCTTCGGCCC
CAAGGCCTGACGGGAAGCAAGATGGAGAAGCTTTGCGATGTCCTGAACAT
CACATTGAACAAAAATGCGGTAGTCGGGGACCGCAGCGCTCTTACACCGG
GAGGAGTCCGGATCGGAGCACCAGCCCTGACGAGCCGCGGGTTTAAGGAG
GCGGATTTCGAGCAGGTGGCTGATTTCTTGGACCGAGCCCTGAAAATTGG
CTTGAGAGTGCAGGCGGCATCGGGGCCCAAGCTGGTTGACTTTGCCAAGG
CCGTGGCCGACGACGCCGAGGTGAAGGCCTTAAAGGCGGAGGTGAACGCT
TTCGCAAAGGGGTTTCCGATGCCCGGCATCGTCTAAGAAAAAAATCGTCA
GGCTACTTCTTTGGAGCTGATCGCCTCCGAGAACTTCACCTCCGCGGCTG
TCATGGAGTGCCTGGGCTCCGTTCTGACGAACAAGGAACAACCTCAGCAC
ACTCGCTTTCCTCGTCTACAACCATGTCTCTTGCTCAAAACAAGTCTTTA
AAGGAGCACGATCCTGTCTTGTACGACCTTATTCAGCAGATGGCTCCAGA
CG
back to top
Synonyms
Publications