EWM29153.1, cds1524 (CDS) Nannochloropsis gaditana

Overview
NameEWM29153.1
Unique Namecds1524
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:869155..869167 -
Alignment locationCM002457.1:868710..868813 -
Alignment locationCM002457.1:868424..868522 -
Alignment locationCM002457.1:867071..868267 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29153.1
Productserine hydroxymethyltransferase
Orig transcript idgnl|cribi|Naga_100007g45.6480.mrna
GeneSHMT2
GbkeyCDS
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:869155..869167 -
CM002457.1supercontigCM002457.1:868710..868813 -
CM002457.1supercontigCM002457.1:868424..868522 -
CM002457.1supercontigCM002457.1:867071..868267 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0009058biosynthetic process
GO:0042221response to chemical
GO:0009719response to endogenous stimulus
GO:0009056catabolic process
GO:0006544glycine metabolic process
GO:0006563L-serine metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0030170pyridoxal phosphate binding
GO:0004372glycine hydroxymethyltransferase activity
GO:0003824catalytic activity
GO:0016740transferase activity
Vocabulary: INTERPRO
TermDefinition
IPR015424PyrdxlP-dep_Trfase
IPR019798Ser_HO-MeTrfase_PLP_BS
IPR015422PyrdxlP-dep_Trfase_major_sub2
IPR015421PyrdxlP-dep_Trfase_major_sub1
IPR001085Ser_HO-MeTrfase
Homology
BLAST of EWM29153.1 vs. NCBI_GenBank
Match: gi|585111673|gb|EWM29153.1| (serine hydroxymethyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 975.311 bits (2520), Expect = 0.000e+0
Identity = 470/470 (100.00%), Postives = 470/470 (100.00%), Query Frame = 0
Query:    1 MAPDGTTSAHSLSSSTTMSLAQNKSLKEHDPVLYDLIQQEKNRQATSLELIASENFTSAAVMECLGSVLTNKYAEGLPGARYYGGNEVVDQVENLCRDRALQAYRLDPEKWGVNVQPYSGSPANFAVYTALLRPHDRIMGLDLPSGGHLTHGFYTYNKAEGTRKAVSATSIYFESLPYRVHPDTGLIDYDQMEVNAALFKPAMIISGGSAYPREWDYARIRAIADANGSLMMVDMAHISGLVAAQEAANPFEYADVVTTTTHKSLRGPRAGLIFFRKDDRNFEGRINQAVFPALQGGPHEHQIAGVATQLKEVMTPEFKEYAIQVKKNAQAIGKALMAKGYKMATGGTVNHLVLWDLRPQGLTGSKMEKLCDVLNITLNKNAVVGDRSALTPGGVRIGAPALTSRGFKEADFEQVADFLDRALKIGLRVQAASGPKLVDFAKAVADDAEVKALKAEVNAFAKGFPMPGIV 470
            MAPDGTTSAHSLSSSTTMSLAQNKSLKEHDPVLYDLIQQEKNRQATSLELIASENFTSAAVMECLGSVLTNKYAEGLPGARYYGGNEVVDQVENLCRDRALQAYRLDPEKWGVNVQPYSGSPANFAVYTALLRPHDRIMGLDLPSGGHLTHGFYTYNKAEGTRKAVSATSIYFESLPYRVHPDTGLIDYDQMEVNAALFKPAMIISGGSAYPREWDYARIRAIADANGSLMMVDMAHISGLVAAQEAANPFEYADVVTTTTHKSLRGPRAGLIFFRKDDRNFEGRINQAVFPALQGGPHEHQIAGVATQLKEVMTPEFKEYAIQVKKNAQAIGKALMAKGYKMATGGTVNHLVLWDLRPQGLTGSKMEKLCDVLNITLNKNAVVGDRSALTPGGVRIGAPALTSRGFKEADFEQVADFLDRALKIGLRVQAASGPKLVDFAKAVADDAEVKALKAEVNAFAKGFPMPGIV
Sbjct:    1 MAPDGTTSAHSLSSSTTMSLAQNKSLKEHDPVLYDLIQQEKNRQATSLELIASENFTSAAVMECLGSVLTNKYAEGLPGARYYGGNEVVDQVENLCRDRALQAYRLDPEKWGVNVQPYSGSPANFAVYTALLRPHDRIMGLDLPSGGHLTHGFYTYNKAEGTRKAVSATSIYFESLPYRVHPDTGLIDYDQMEVNAALFKPAMIISGGSAYPREWDYARIRAIADANGSLMMVDMAHISGLVAAQEAANPFEYADVVTTTTHKSLRGPRAGLIFFRKDDRNFEGRINQAVFPALQGGPHEHQIAGVATQLKEVMTPEFKEYAIQVKKNAQAIGKALMAKGYKMATGGTVNHLVLWDLRPQGLTGSKMEKLCDVLNITLNKNAVVGDRSALTPGGVRIGAPALTSRGFKEADFEQVADFLDRALKIGLRVQAASGPKLVDFAKAVADDAEVKALKAEVNAFAKGFPMPGIV 470          
BLAST of EWM29153.1 vs. NCBI_GenBank
Match: gi|585111674|gb|EWM29154.1| (serine hydroxymethyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 969.533 bits (2505), Expect = 0.000e+0
Identity = 467/468 (99.79%), Postives = 467/468 (99.79%), Query Frame = 0
Query:    3 PDGTTSAHSLSSSTTMSLAQNKSLKEHDPVLYDLIQQEKNRQATSLELIASENFTSAAVMECLGSVLTNKYAEGLPGARYYGGNEVVDQVENLCRDRALQAYRLDPEKWGVNVQPYSGSPANFAVYTALLRPHDRIMGLDLPSGGHLTHGFYTYNKAEGTRKAVSATSIYFESLPYRVHPDTGLIDYDQMEVNAALFKPAMIISGGSAYPREWDYARIRAIADANGSLMMVDMAHISGLVAAQEAANPFEYADVVTTTTHKSLRGPRAGLIFFRKDDRNFEGRINQAVFPALQGGPHEHQIAGVATQLKEVMTPEFKEYAIQVKKNAQAIGKALMAKGYKMATGGTVNHLVLWDLRPQGLTGSKMEKLCDVLNITLNKNAVVGDRSALTPGGVRIGAPALTSRGFKEADFEQVADFLDRALKIGLRVQAASGPKLVDFAKAVADDAEVKALKAEVNAFAKGFPMPGIV 470
            P GTTSAHSLSSSTTMSLAQNKSLKEHDPVLYDLIQQEKNRQATSLELIASENFTSAAVMECLGSVLTNKYAEGLPGARYYGGNEVVDQVENLCRDRALQAYRLDPEKWGVNVQPYSGSPANFAVYTALLRPHDRIMGLDLPSGGHLTHGFYTYNKAEGTRKAVSATSIYFESLPYRVHPDTGLIDYDQMEVNAALFKPAMIISGGSAYPREWDYARIRAIADANGSLMMVDMAHISGLVAAQEAANPFEYADVVTTTTHKSLRGPRAGLIFFRKDDRNFEGRINQAVFPALQGGPHEHQIAGVATQLKEVMTPEFKEYAIQVKKNAQAIGKALMAKGYKMATGGTVNHLVLWDLRPQGLTGSKMEKLCDVLNITLNKNAVVGDRSALTPGGVRIGAPALTSRGFKEADFEQVADFLDRALKIGLRVQAASGPKLVDFAKAVADDAEVKALKAEVNAFAKGFPMPGIV
Sbjct:   19 PTGTTSAHSLSSSTTMSLAQNKSLKEHDPVLYDLIQQEKNRQATSLELIASENFTSAAVMECLGSVLTNKYAEGLPGARYYGGNEVVDQVENLCRDRALQAYRLDPEKWGVNVQPYSGSPANFAVYTALLRPHDRIMGLDLPSGGHLTHGFYTYNKAEGTRKAVSATSIYFESLPYRVHPDTGLIDYDQMEVNAALFKPAMIISGGSAYPREWDYARIRAIADANGSLMMVDMAHISGLVAAQEAANPFEYADVVTTTTHKSLRGPRAGLIFFRKDDRNFEGRINQAVFPALQGGPHEHQIAGVATQLKEVMTPEFKEYAIQVKKNAQAIGKALMAKGYKMATGGTVNHLVLWDLRPQGLTGSKMEKLCDVLNITLNKNAVVGDRSALTPGGVRIGAPALTSRGFKEADFEQVADFLDRALKIGLRVQAASGPKLVDFAKAVADDAEVKALKAEVNAFAKGFPMPGIV 486          
BLAST of EWM29153.1 vs. NCBI_GenBank
Match: gi|813171984|ref|XP_012204747.1| (serine hydroxymethyltransferase 2 [Saprolegnia parasitica CBS 223.65] >gi|641530356|gb|KDO24481.1| serine hydroxymethyltransferase 2 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 728.013 bits (1878), Expect = 0.000e+0
Identity = 338/452 (74.78%), Postives = 390/452 (86.28%), Query Frame = 0
Query:   18 MSLAQNKSLKEHDPVLYDLIQQEKNRQATSLELIASENFTSAAVMECLGSVLTNKYAEGLPGARYYGGNEVVDQVENLCRDRALQAYRLDPEKWGVNVQPYSGSPANFAVYTALLRPHDRIMGLDLPSGGHLTHGFYTYNKAEGTRKAVSATSIYFESLPYRVHPDTGLIDYDQMEVNAALFKPAMIISGGSAYPREWDYARIRAIADANGSLMMVDMAHISGLVAAQEAANPFEYADVVTTTTHKSLRGPRAGLIFFRKDDRNFEGRINQAVFPALQGGPHEHQIAGVATQLKEVMTPEFKEYAIQVKKNAQAIGKALMAKGYKMATGGTVNHLVLWDLRPQGLTGSKMEKLCDVLNITLNKNAVVGDRSALTPGGVRIGAPALTSRGFKEADFEQVADFLDRALKIGLRVQAASGPKLVDFAKAVADDAEVKALKAEVNAFAKGFPMPGI 469
            MS + N SL++HDP +++LI+ EKNRQ   LELIASENFTS AVM+CLGS LTNKYAEG+P ARYYGGNEV+D++E LC+ RAL+AY L+PE+WGVNVQPYSGSPANFAVYTALLRPHDRIMGLDLPSGGHLTHGFYTY+KAE TRKAVSATS+YFESLPYRVHP+TGL+D++++   AALFKPAMI+ GGSAYPR+WDYA  R IAD NGSL+M DMAH SGLVAAQE A+PFE+ DVVTTTTHKSLRGPRAG+IFFRKD R FE +INQAVFPALQGGPHEHQIA +ATQLKEVMTPEFK YA QVK N +AI  AL+  GY ++TGGT NHL+LWDLRP G+TGSKMEKLCD + ITLNKN+V+GDRSA+TPGGVR+G PALTSRGFKEADF  VA FL RA+++ L +QA +G K+VDF KA+   A VKAL+A+VNAFA  F MPG 
Sbjct:    1 MSASGNISLEQHDPEMFNLIEAEKNRQWKCLELIASENFTSRAVMDCLGSCLTNKYAEGIPSARYYGGNEVIDKIETLCQTRALKAYGLNPEEWGVNVQPYSGSPANFAVYTALLRPHDRIMGLDLPSGGHLTHGFYTYSKAENTRKAVSATSVYFESLPYRVHPETGLVDFEKLAETAALFKPAMIVCGGSAYPRDWDYAAFRKIADDNGSLLMCDMAHYSGLVAAQEHASPFEFCDVVTTTTHKSLRGPRAGMIFFRKDTRGFENKINQAVFPALQGGPHEHQIAAIATQLKEVMTPEFKAYAKQVKSNCRAIAAALVEYGYVLSTGGTDNHLLLWDLRPVGITGSKMEKLCDEVCITLNKNSVLGDRSAVTPGGVRVGTPALTSRGFKEADFVTVAGFLHRAVQLCLEIQATTGKKIVDFNKALESHAGVKALRADVNAFATKFNMPGF 452          
BLAST of EWM29153.1 vs. NCBI_GenBank
Match: gi|299115431|emb|CBN75596.1| (serine hydroxymethyltransferase 2 [Ectocarpus siliculosus])

HSP 1 Score: 727.628 bits (1877), Expect = 0.000e+0
Identity = 337/451 (74.72%), Postives = 388/451 (86.03%), Query Frame = 0
Query:   19 SLAQNKSLKEHDPVLYDLIQQEKNRQATSLELIASENFTSAAVMECLGSVLTNKYAEGLPGARYYGGNEVVDQVENLCRDRALQAYRLDPEKWGVNVQPYSGSPANFAVYTALLRPHDRIMGLDLPSGGHLTHGFYTYNKAEGTRKAVSATSIYFESLPYRVHPDTGLIDYDQMEVNAALFKPAMIISGGSAYPREWDYARIRAIADANGSLMMVDMAHISGLVAAQEAANPFEYADVVTTTTHKSLRGPRAGLIFFRKDDRNFEGRINQAVFPALQGGPHEHQIAGVATQLKEVMTPEFKEYAIQVKKNAQAIGKALMAKGYKMATGGTVNHLVLWDLRPQGLTGSKMEKLCDVLNITLNKNAVVGDRSALTPGGVRIGAPALTSRGFKEADFEQVADFLDRALKIGLRVQAASGPKLVDFAKAVADDAEVKALKAEVNAFAKGFPMPGI 469
            +L  N SL +HDP ++DLI++EK RQ +SLELIASENFTS AVM+CLGS LTNKYAEG+PGARYYGGN+VVDQ+E LC+ RAL+AY LDPEKWGVNVQPYSGSPANFA YTALLRPHDRIMGLDLPSGGHLTHGFYTY+K EGTRKAVSATS+YFESLPYRVHPDTGLID+D +   A LFKPAM+I GGSAYPREWDYA+ R IADANG+L++ DMAHISGLV  +EAA+PF++ DVVTTTTHKSLRGPRAGLIF+RKD+R FE +INQAVFPALQGGPHEHQIAGVATQLKE MTPEFKEY IQVKKNA A    L+  GY + TGGT NHL+LWDLRP+ LTGSKMEK+CD ++ITLNKNAV GDRSA++PGGVRIGAPALT+RG KE +F Q+A F+DRA ++ +++Q  SG  L DFA A+  D EVKAL  +V AFA+ +PMPG 
Sbjct:    9 TLPGNVSLADHDPAMFDLIEKEKTRQWSSLELIASENFTSRAVMDCLGSALTNKYAEGVPGARYYGGNQVVDQIEGLCQSRALEAYGLDPEKWGVNVQPYSGSPANFAAYTALLRPHDRIMGLDLPSGGHLTHGFYTYSKKEGTRKAVSATSVYFESLPYRVHPDTGLIDHDDLARLAGLFKPAMVICGGSAYPREWDYAKFREIADANGALLLCDMAHISGLVVTKEAASPFDHCDVVTTTTHKSLRGPRAGLIFYRKDERGFESKINQAVFPALQGGPHEHQIAGVATQLKEAMTPEFKEYIIQVKKNASACADELVKLGYTICTGGTENHLLLWDLRPKALTGSKMEKICDKVHITLNKNAVQGDRSAMSPGGVRIGAPALTTRGMKEPEFRQIAAFMDRAAQLAIKIQQGSGKMLKDFAIALESDEEVKALGDDVKAFARRWPMPGF 459          
BLAST of EWM29153.1 vs. NCBI_GenBank
Match: gi|224010070|ref|XP_002293993.1| (serine hydroxymethyltransferase [Thalassiosira pseudonana CCMP1335] >gi|220970665|gb|EED89002.1| serine hydroxymethyltransferase [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 724.161 bits (1868), Expect = 0.000e+0
Identity = 335/446 (75.11%), Postives = 386/446 (86.55%), Query Frame = 0
Query:   24 KSLKEHDPVLYDLIQQEKNRQATSLELIASENFTSAAVMECLGSVLTNKYAEGLPGARYYGGNEVVDQVENLCRDRALQAYRLDPEKWGVNVQPYSGSPANFAVYTALLRPHDRIMGLDLPSGGHLTHGFYTYNKAEGTRKAVSATSIYFESLPYRVHPDTGLIDYDQMEVNAALFKPAMIISGGSAYPREWDYARIRAIADANGSLMMVDMAHISGLVAAQEAANPFEYADVVTTTTHKSLRGPRAGLIFFRKDDRNFEGRINQAVFPALQGGPHEHQIAGVATQLKEVMTPEFKEYAIQVKKNAQAIGKALMAKGYKMATGGTVNHLVLWDLRPQGLTGSKMEKLCDVLNITLNKNAVVGDRSALTPGGVRIGAPALTSRGFKEADFEQVADFLDRALKIGLRVQAASGPKLVDFAKAVADDAEVKALKAEVNAFAKGFPMPGI 469
            K L EHDP+L+DLI++EK RQ TSLELIASENFTS AVM+CLGS LTNKY+EGLP ARYYGGNE+VDQVE LC+ RAL+AY LD ++WGVNVQPYSGSPANFAVYT LLRPHDRIMGLDLPSGGHLTHGFYTY+K EGTRKAVSATS+YFESLPY+V   TG+I+YDQ+E +A+LFKPAMII+GGSAYPR+WDYAR R IAD NG+L+++DMAHISGLVA +E  +PFEY DVVTTTTHKSLRGPRAG+IFFR+D+R FE +INQAVFPALQGGPHEHQIAGVATQL EVMTPEF +Y+ QV+KNAQA+G  L++ GY +ATGGT NHLVLWDL+PQ LTGSK EK+CD ++ITLNKN V GDRSA+TPGGVRIGAPALT+R   EADFEQ+A FL  AL I L++Q  SGPKLVDF K +  + EV+ L+  VN FA GFPMPG 
Sbjct:   22 KPLSEHDPLLFDLIEKEKLRQYTSLELIASENFTSRAVMDCLGSALTNKYSEGLPHARYYGGNEIVDQVEELCQKRALEAYGLDEKEWGVNVQPYSGSPANFAVYTGLLRPHDRIMGLDLPSGGHLTHGFYTYSKKEGTRKAVSATSVYFESLPYQVDQTTGIINYDQLERDASLFKPAMIIAGGSAYPRDWDYARFRKIADENGALLIMDMAHISGLVATKEQKSPFEYCDVVTTTTHKSLRGPRAGMIFFRRDERGFEHKINQAVFPALQGGPHEHQIAGVATQLLEVMTPEFHQYSAQVRKNAQALGNKLISLGYSLATGGTENHLVLWDLKPQKLTGSKFEKVCDAVSITLNKNCVPGDRSAVTPGGVRIGAPALTTRKMVEADFEQIAMFLHEALTIALKIQEESGPKLVDFVKCLEQNGEVEGLRKRVNEFASGFPMPGF 467          
BLAST of EWM29153.1 vs. NCBI_GenBank
Match: gi|1173953382|gb|OQS00929.1| (serine hydroxymethyltransferase 1, mitochondrial precursor [Thraustotheca clavata])

HSP 1 Score: 721.079 bits (1860), Expect = 0.000e+0
Identity = 334/452 (73.89%), Postives = 388/452 (85.84%), Query Frame = 0
Query:   18 MSLAQNKSLKEHDPVLYDLIQQEKNRQATSLELIASENFTSAAVMECLGSVLTNKYAEGLPGARYYGGNEVVDQVENLCRDRALQAYRLDPEKWGVNVQPYSGSPANFAVYTALLRPHDRIMGLDLPSGGHLTHGFYTYNKAEGTRKAVSATSIYFESLPYRVHPDTGLIDYDQMEVNAALFKPAMIISGGSAYPREWDYARIRAIADANGSLMMVDMAHISGLVAAQEAANPFEYADVVTTTTHKSLRGPRAGLIFFRKDDRNFEGRINQAVFPALQGGPHEHQIAGVATQLKEVMTPEFKEYAIQVKKNAQAIGKALMAKGYKMATGGTVNHLVLWDLRPQGLTGSKMEKLCDVLNITLNKNAVVGDRSALTPGGVRIGAPALTSRGFKEADFEQVADFLDRALKIGLRVQAASGPKLVDFAKAVADDAEVKALKAEVNAFAKGFPMPGI 469
            MS + N SL++HDP +++LI+ EKNRQ   LELIASENFTS AVM+CLGS LTNKYAEG+P ARYYGGNEV+D++E LC+ RAL+AY L+PE+WGVNVQPYSGSPANFAVYTALLRPHDRIMGLDLPSGGHLTHGFYTY+KAE TRKAVSATS+YFESLPYRVHP TGLID+D++  +AALFKPA+I+ GGSAYPR+WDYA  R IAD NG+L+M DMAH SGLVA QE A+PFEY DVVTTTTHKSLRGPRAG+IF+RKD R+FE +INQAVFPALQGGPHEHQIA +ATQLKEVMTPEFK+YA QVK N +A+ KAL+  GY ++TGGT NHL+LWDLRP G+TGSKMEKLCD   ITLNKN+V+GDRSA+TPGGVR+G PALTSRGFKEADF  VA FL RA+++ + +Q  SG K+VDF  A+   A VK L+A+VNAFA  F MPG 
Sbjct:    1 MSASGNISLEQHDPEMFNLIENEKNRQWKCLELIASENFTSRAVMDCLGSALTNKYAEGIPNARYYGGNEVIDKIETLCQTRALKAYGLNPEEWGVNVQPYSGSPANFAVYTALLRPHDRIMGLDLPSGGHLTHGFYTYSKAENTRKAVSATSVYFESLPYRVHPQTGLIDFDKLAESAALFKPALIVCGGSAYPRDWDYASFRKIADDNGTLLMCDMAHYSGLVATQEHASPFEYCDVVTTTTHKSLRGPRAGMIFYRKDARSFENKINQAVFPALQGGPHEHQIAAIATQLKEVMTPEFKQYAKQVKANCRALAKALVEYGYVLSTGGTDNHLLLWDLRPAGITGSKMEKLCDEACITLNKNSVLGDRSAVTPGGVRVGTPALTSRGFKEADFITVAGFLHRAVQLCIEIQKTSGKKIVDFNNALHSHAGVKTLRADVNAFATKFNMPGF 452          
BLAST of EWM29153.1 vs. NCBI_GenBank
Match: gi|1173931397|gb|OQR83827.1| (serine hydroxymethyltransferase 1, mitochondrial precursor [Achlya hypogyna])

HSP 1 Score: 721.079 bits (1860), Expect = 0.000e+0
Identity = 335/452 (74.12%), Postives = 389/452 (86.06%), Query Frame = 0
Query:   18 MSLAQNKSLKEHDPVLYDLIQQEKNRQATSLELIASENFTSAAVMECLGSVLTNKYAEGLPGARYYGGNEVVDQVENLCRDRALQAYRLDPEKWGVNVQPYSGSPANFAVYTALLRPHDRIMGLDLPSGGHLTHGFYTYNKAEGTRKAVSATSIYFESLPYRVHPDTGLIDYDQMEVNAALFKPAMIISGGSAYPREWDYARIRAIADANGSLMMVDMAHISGLVAAQEAANPFEYADVVTTTTHKSLRGPRAGLIFFRKDDRNFEGRINQAVFPALQGGPHEHQIAGVATQLKEVMTPEFKEYAIQVKKNAQAIGKALMAKGYKMATGGTVNHLVLWDLRPQGLTGSKMEKLCDVLNITLNKNAVVGDRSALTPGGVRIGAPALTSRGFKEADFEQVADFLDRALKIGLRVQAASGPKLVDFAKAVADDAEVKALKAEVNAFAKGFPMPGI 469
            MS + N SL++HDP +++LI+ EKNRQ   LELIASENFTS AVM+CLGS LTNKYAEG+P ARYYGGNEV+D++E LC+ RAL+AY L+PE+WGVNVQPYSGSPANFAVYT LLRPHDRIMGLDLPSGGHLTHGFYTY+KAE TRKAVSATS+YFESLPYRVHP+TGLID+D++  +AALFKPA+I+ GGSAYPR+WDYA  R IAD NG+L+M DMAH SGLVAA E A+PFE+ DVVTTTTHKSLRGPRAG+IFFRKD R FE +INQAVFPALQGGPHEHQIA +ATQLKEVMTPEFK YA QVK N +AI  AL+  GY ++TGGT NHL+LWDLRP G+TGSKMEKLCD + ITLNKN+V+GDRSA+TPGGVRIG PALTSRGFKEADF  VA FL RA+++ + +Q  +G K+ DF KA+  +A+VKALKA+VNAFA  F MPG 
Sbjct:    1 MSASGNISLEQHDPEMFNLIENEKNRQWKCLELIASENFTSRAVMDCLGSCLTNKYAEGIPNARYYGGNEVIDKIETLCQTRALKAYGLNPEEWGVNVQPYSGSPANFAVYTGLLRPHDRIMGLDLPSGGHLTHGFYTYSKAENTRKAVSATSVYFESLPYRVHPETGLIDFDKLAESAALFKPALIVCGGSAYPRDWDYASFRKIADDNGALLMCDMAHYSGLVAAGEHASPFEFCDVVTTTTHKSLRGPRAGMIFFRKDARGFENKINQAVFPALQGGPHEHQIAAIATQLKEVMTPEFKAYAKQVKANCRAIAAALVEYGYVLSTGGTDNHLLLWDLRPAGITGSKMEKLCDEVCITLNKNSVLGDRSAVTPGGVRIGTPALTSRGFKEADFITVAGFLHRAVQLCVEIQKTTGKKIADFNKALESNADVKALKADVNAFATKFNMPGF 452          
BLAST of EWM29153.1 vs. NCBI_GenBank
Match: gi|669154906|ref|XP_008613015.1| (serine hydroxymethyltransferase 2 [Saprolegnia diclina VS20] >gi|530735133|gb|EQC33375.1| serine hydroxymethyltransferase 2 [Saprolegnia diclina VS20])

HSP 1 Score: 721.079 bits (1860), Expect = 0.000e+0
Identity = 335/452 (74.12%), Postives = 388/452 (85.84%), Query Frame = 0
Query:   18 MSLAQNKSLKEHDPVLYDLIQQEKNRQATSLELIASENFTSAAVMECLGSVLTNKYAEGLPGARYYGGNEVVDQVENLCRDRALQAYRLDPEKWGVNVQPYSGSPANFAVYTALLRPHDRIMGLDLPSGGHLTHGFYTYNKAEGTRKAVSATSIYFESLPYRVHPDTGLIDYDQMEVNAALFKPAMIISGGSAYPREWDYARIRAIADANGSLMMVDMAHISGLVAAQEAANPFEYADVVTTTTHKSLRGPRAGLIFFRKDDRNFEGRINQAVFPALQGGPHEHQIAGVATQLKEVMTPEFKEYAIQVKKNAQAIGKALMAKGYKMATGGTVNHLVLWDLRPQGLTGSKMEKLCDVLNITLNKNAVVGDRSALTPGGVRIGAPALTSRGFKEADFEQVADFLDRALKIGLRVQAASGPKLVDFAKAVADDAEVKALKAEVNAFAKGFPMPGI 469
            MS + N SL++HDP +++LI+ EKNRQ   LELIASENFTS AVM+CLGS LTNKYAEG+P ARYYGGNEV+D++E LC+ RAL+AY L+PE+WGVNVQPYSGSPANFAVYTALLRPHDRIMGLDLPSGGHLTHGFYTY+KAE TRKAVSATS+YFESLPYRVHP+TGL+D++++   AALFKPAMI+ GGSAYPR+WDYA  R IAD NG+L+M DMAH SGLVA QE A+PF+  DVVTTTTHKSLRGPRAG+IFFRKD R FE +INQAVFPALQGGPHEHQIA +ATQLKEVMTPEFK YA QVK N +AI  AL+  GY ++TGGT NHL+LWDLRP G+TGSKMEKLCD + ITLNKN+V+GDRSA+TPGGVR+G PALTSRGFKEADF  VA FL RA+K+ L +QA +G K+VDF KA+   A VKAL+++VNAFA  F MPG 
Sbjct:    1 MSASGNISLEQHDPEMFNLIEAEKNRQWKCLELIASENFTSRAVMDCLGSCLTNKYAEGIPSARYYGGNEVIDKIETLCQTRALKAYGLNPEEWGVNVQPYSGSPANFAVYTALLRPHDRIMGLDLPSGGHLTHGFYTYSKAENTRKAVSATSVYFESLPYRVHPETGLVDFEKLAETAALFKPAMIVCGGSAYPRDWDYASFRKIADDNGALLMCDMAHYSGLVATQEHASPFDLCDVVTTTTHKSLRGPRAGMIFFRKDARGFENKINQAVFPALQGGPHEHQIAAIATQLKEVMTPEFKAYAKQVKANCRAIAAALVEYGYVLSTGGTDNHLLLWDLRPVGITGSKMEKLCDEVCITLNKNSVLGDRSAVTPGGVRVGTPALTSRGFKEADFVTVAGFLHRAVKLCLEIQATTGKKIVDFNKALESHAGVKALRSDVNAFATKFNMPGF 452          
BLAST of EWM29153.1 vs. NCBI_GenBank
Match: gi|219113127|ref|XP_002186147.1| (serine hydroxymethyltransferase [Phaeodactylum tricornutum CCAP 1055/1] >gi|209582997|gb|ACI65617.1| serine hydroxymethyltransferase [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 720.309 bits (1858), Expect = 0.000e+0
Identity = 338/445 (75.96%), Postives = 384/445 (86.29%), Query Frame = 0
Query:   25 SLKEHDPVLYDLIQQEKNRQATSLELIASENFTSAAVMECLGSVLTNKYAEGLPGARYYGGNEVVDQVENLCRDRALQAYRLDPEKWGVNVQPYSGSPANFAVYTALLRPHDRIMGLDLPSGGHLTHGFYTYNKAEGTRKAVSATSIYFESLPYRVHPDTGLIDYDQMEVNAALFKPAMIISGGSAYPREWDYARIRAIADANGSLMMVDMAHISGLVAAQEAANPFEYADVVTTTTHKSLRGPRAGLIFFRKDDRNFEGRINQAVFPALQGGPHEHQIAGVATQLKEVMTPEFKEYAIQVKKNAQAIGKALMAKGYKMATGGTVNHLVLWDLRPQGLTGSKMEKLCDVLNITLNKNAVVGDRSALTPGGVRIGAPALTSRGFKEADFEQVADFLDRALKIGLRVQAASGPKLVDFAKAVADDAEVKALKAEVNAFAKGFPMPGI 469
            SL+EHDP L+DLI+QEK+RQ  SLELIASENFTS AVM+CLGS LTNKYAEGLPGARYYGGNEVVDQVE LC+ RAL+AY LDPEKWGVNVQPYSGSPANFAVYTALL+PHDRIMGLDLPSGGHLTHGFYTY+K EGTRKAVSATS+YFESLPYRVHP+TG IDYDQ+E +A LFKPAMII+GGSAYPR++DY R R IADANG+L+M+DMAH SGLVA  E  +PFEYADVVTTTTHKSLRGPRAG+IFFRKD+R FE RINQAVFPALQGGPHEHQIAGVATQLKEV +P+FK Y+ QVKKNA+A+   L + GY MA+GGT NHLVLWDL+PQG+TGSK EK+CD ++ITLNKN V GD SA+TPGGVRIG PALT+R   E+DFEQ+  FL  AL+I L +Q  SGPKL DF   +  +A+++ALK  V+ FA  FPMPG 
Sbjct:   14 SLEEHDPELFDLIEQEKSRQWRSLELIASENFTSRAVMDCLGSALTNKYAEGLPGARYYGGNEVVDQVEALCQKRALEAYGLDPEKWGVNVQPYSGSPANFAVYTALLKPHDRIMGLDLPSGGHLTHGFYTYSKKEGTRKAVSATSVYFESLPYRVHPETGYIDYDQLERDAGLFKPAMIIAGGSAYPRDYDYKRFREIADANGALLMMDMAHTSGLVATGELDSPFEYADVVTTTTHKSLRGPRAGMIFFRKDERGFESRINQAVFPALQGGPHEHQIAGVATQLKEVCSPDFKVYSQQVKKNAKALADKLTSMGYSMASGGTENHLVLWDLKPQGITGSKFEKVCDAVSITLNKNCVPGDVSAVTPGGVRIGTPALTTRTMVESDFEQIGQFLHEALEITLAIQEKSGPKLKDFLPLLEKNADIEALKVRVHDFATTFPMPGF 458          
BLAST of EWM29153.1 vs. NCBI_GenBank
Match: gi|1072223084|gb|OEU07841.1| (serine hydroxymethyltransferase [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 716.842 bits (1849), Expect = 0.000e+0
Identity = 333/445 (74.83%), Postives = 379/445 (85.17%), Query Frame = 0
Query:   25 SLKEHDPVLYDLIQQEKNRQATSLELIASENFTSAAVMECLGSVLTNKYAEGLPGARYYGGNEVVDQVENLCRDRALQAYRLDPEKWGVNVQPYSGSPANFAVYTALLRPHDRIMGLDLPSGGHLTHGFYTYNKAEGTRKAVSATSIYFESLPYRVHPDTGLIDYDQMEVNAALFKPAMIISGGSAYPREWDYARIRAIADANGSLMMVDMAHISGLVAAQEAANPFEYADVVTTTTHKSLRGPRAGLIFFRKDDRNFEGRINQAVFPALQGGPHEHQIAGVATQLKEVMTPEFKEYAIQVKKNAQAIGKALMAKGYKMATGGTVNHLVLWDLRPQGLTGSKMEKLCDVLNITLNKNAVVGDRSALTPGGVRIGAPALTSRGFKEADFEQVADFLDRALKIGLRVQAASGPKLVDFAKAVADDAEVKALKAEVNAFAKGFPMPGI 469
            SL++HDP L+DLI+QEKNRQ  SLELIASENFTS AVM+CLGS LTNKY+EGLPGARYYGGNEVVDQVE LC+ RAL+AY LDPEKWGVNVQPYSGSPANFAVYT LL+PHDRIMGLDLPSGGHLTHGFYTY+K EGTRKAVSATS+YFES PYRVHP+TG +D+D +  +A +FKPAMII GGSAYPR+WDY + R IADANGSL+M+DMAHISGLVA  E  +PF+Y DVVTTTTHKSLRGPRAG+IFFRKD+R FE +INQAVFPALQGGPHEHQIAGVATQLKEVMTPEFK Y+ QVKKNA A+ + L +KGYKMA+GGT NHLVLWDL+P G+TGSK EK CD +NITLNKN V GDRSA+TPGGVRIGA ALT+R   E DFEQ+A+ L   L+  L++Q  SGPKL DF   +  D  +K+++  VNAFA  FPMPG 
Sbjct:   14 SLEDHDPELFDLIEQEKNRQWRSLELIASENFTSKAVMDCLGSALTNKYSEGLPGARYYGGNEVVDQVETLCQKRALKAYGLDPEKWGVNVQPYSGSPANFAVYTGLLKPHDRIMGLDLPSGGHLTHGFYTYSKKEGTRKAVSATSVYFESFPYRVHPETGYVDHDGLARDAGVFKPAMIICGGSAYPRDWDYGKFREIADANGSLLMMDMAHISGLVATGEQTSPFDYCDVVTTTTHKSLRGPRAGMIFFRKDERGFETKINQAVFPALQGGPHEHQIAGVATQLKEVMTPEFKVYSQQVKKNANALAEKLQSKGYKMASGGTENHLVLWDLKPAGITGSKYEKCCDFVNITLNKNCVPGDRSAITPGGVRIGACALTTRKMCEPDFEQIAELLHEVLEAALKLQEKSGPKLKDFTALLDGDETLKSIRERVNAFATTFPMPGF 458          
The following BLAST results are available for this feature:
BLAST of EWM29153.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111673|gb|EWM29153.1|0.000e+0100.00serine hydroxymethyltransferase [Nannochloropsis g... [more]
gi|585111674|gb|EWM29154.1|0.000e+099.79serine hydroxymethyltransferase [Nannochloropsis g... [more]
gi|813171984|ref|XP_012204747.1|0.000e+074.78serine hydroxymethyltransferase 2 [Saprolegnia par... [more]
gi|299115431|emb|CBN75596.1|0.000e+074.72serine hydroxymethyltransferase 2 [Ectocarpus sili... [more]
gi|224010070|ref|XP_002293993.1|0.000e+075.11serine hydroxymethyltransferase [Thalassiosira pse... [more]
gi|1173953382|gb|OQS00929.1|0.000e+073.89serine hydroxymethyltransferase 1, mitochondrial p... [more]
gi|1173931397|gb|OQR83827.1|0.000e+074.12serine hydroxymethyltransferase 1, mitochondrial p... [more]
gi|669154906|ref|XP_008613015.1|0.000e+074.12serine hydroxymethyltransferase 2 [Saprolegnia dic... [more]
gi|219113127|ref|XP_002186147.1|0.000e+075.96serine hydroxymethyltransferase [Phaeodactylum tri... [more]
gi|1072223084|gb|OEU07841.1|0.000e+074.83serine hydroxymethyltransferase [Fragilariopsis cy... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1527rna1527Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications