NO29G00150, NO29G00150 (gene) Nannochloropsis oceanica

Overview
NameNO29G00150
Unique NameNO29G00150
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2955
Alignment locationchr29:61565..64519 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr29genomechr29:61565..64519 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO29G00150 vs. NCBI_GenBank
Match: EWM21229.1 (hypothetical protein Naga_100589g2 [Nannochloropsis gaditana])

HSP 1 Score: 109.4 bits (272), Expect = 1.900e-20
Identity = 94/124 (75.81%), Postives = 105/124 (84.68%), Query Frame = 0 
Query:   73 QAIPAGMEMEMALMREERERDKELKEKNYSSTSGNRRVWENHEIGVGYQHKTVMRQAVAHHDKVVITDMSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRQLRALIWRQLRQRGRLEKRE 197
            QAIPAG+E+EMALMREER+RDKELKE+N S    +RRVWENHEIGVGYQHK VMRQAV  H+KV I DM+   XXXXXXXXXXXXXXXXXXXXXXXXXXXX  ++LRALIWR+LR R RL+  E
Sbjct:    9 QAIPAGLELEMALMREERQRDKELKERNTSIV--DRRVWENHEIGVGYQHKNVMRQAVVQHEKVRIKDMT--KXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFKRLRALIWRELRGRKRLDALE 128
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BLAST of NO29G00150 vs. NCBI_GenBank
Match: XP_005856186.1 (hypothetical protein NGA_0319500 [Nannochloropsis gaditana CCMP526] >EKU20166.1 hypothetical protein NGA_0319500 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 97.1 bits (240), Expect = 9.600e-17
Identity = 58/101 (57.43%), Postives = 71/101 (70.30%), Query Frame = 0 
Query:   30 MEDSGM---PGTIEAFARASRHGRFG--XXXXXXXXXXXXXGSNFFRKQAIPAGMEMEMALMREERERDKELKE------KNYSSTSGNRRVWENHEIGVG 120
            MED+ M   PGT+EAFARASRHGRF           X    G+ FFR++AIPAG+E+EMALMREER+RDKELKE      +  +++  +RRVWENHEIGVG
Sbjct:    1 MEDANMDMLPGTVEAFARASRHGRFAGDEGQEEGGDXEEETGNAFFRQKAIPAGLELEMALMREERQRDKELKESFPLRDRIRNTSIVDRRVWENHEIGVG 101
The following BLAST results are available for this feature:
BLAST of NO29G00150 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM21229.11.900e-2075.81hypothetical protein Naga_100589g2 [Nannochloropsi... [more]
XP_005856186.19.600e-1757.43hypothetical protein NGA_0319500 [Nannochloropsis ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL064nonsL064Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR079ncniR079Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR081ngnoR081Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR080ngnoR080Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO29G00150.2NO29G00150.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO29G00150.1NO29G00150.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|353617gene_10450Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100589g2gene9195Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO29G00150.2NO29G00150.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO29G00150.1NO29G00150.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO29G00150 ID=NO29G00150|Name=NO29G00150|organism=Nannochloropsis oceanica|type=gene|length=2955bp
AAGAAAGAAGCTGTGTTATCGTTAAACGTTATTTCATTTATCTTCGCTGT
GCTTTAGGACCAGCTACAAGGCATAAAGGTACTCATAAACTTCATGAGAC
AAGGTCAAGATGTACAATTTGAATGATCTGATAGATTATGCGAATGGTGC
TACTGGCTGATGCCGGCAGCTAAACCGTCATGCGGGGCGGGCTTATTCTG
GTGCTCAAAATATGATAGAGGGAGATGTCACCGTACCGGTGGCAAGGCTC
GTAATAGTAATTGAAACCCCAAAAAGGTAAAAAGAGCAAAAAACTTACAT
AACTTTCTGTATAGTCAGTCGTAAGGGTTGGACAGCCTTGACATTAGAAA
CTACACTTTGCCAGGGCTAACAGGGTTAGCGCTTTATCGCTTTCAATCGC
ATTCAAATAATGCGCACTTCCTATTCGCTTCTCCCAGAATATTTCAATTT
CGCTGCCTACCTCTGCCTTCATTCCACCAACCGTCATGTGAGGCCTGAGG
CGCAACTAAGTGTTGGACGATCAACTTTCCGGAGCGTATCGCAGGCAAGG
GCTGCTGTATCAGCGCTATGAATAAAAAACTTGGGCGTAGACACGAAAGA
ATAGTATTGGTTTCGGAATGGAACTGATCCATCCCCCAGCTACGATCCAT
CTTATCCAGGAGCTTAATAAGTCCATTCTCCGGGCTGGAGAGGTACAGAG
GGAACGGATGGAGGGATGCTTTGTGTGTAAAGGTCGCAGAGAGAAGAATC
AAAACTACAAGAGGGAAAAGTTGTGGCATTTATATTTACACCAATTTGTC
CCAATTAGACACTATTGCGTTCATCCCTCCAAAGTTGGCTCTTCTTCTAG
CCATTTTTACTTTTAAGGAGATGGGCCTGCGACAAGAGCTGGTCGCATTA
CAGACCACCACACTACCGCCTTGCATGCACTCAGCCTCGATGACACAAGC
TTACACACACTTTTCTATGGTTGATTGGTTGGTTGATTATTATGTAAACG
CGCACACACTAGCGCCTGTGTAAGGCAATGTCCCTGTCCAACCTCCCCGT
CCGACTTGCCTCCTCAGCCTCCCTCACTCTCCTCCTCCCCCTCTGTCAAC
AACTCAGCCCAACCATGGAGGACAGCGGCATGCCAGGCACCATCGAGGCT
TTTGCTCGGGCCTCCCGGCATGGGCGGTTCGGTGGGGACGAGGAAGAAGA
GGAGGAAGTCGACGACGTGGTTGGTAGCAATTTCTTCAGAAAGCAGGTGG
GTTGAGGGCAAGCATCATAGAAAGAGAGAAATGGAGGAGGGGCGGGATGG
ACTGGAAAGGATGGAGAGTCAAGAATATGCGAATAGGATGGGTGTGGAGG
AAGGATGCATGGTATTGGTCGGTCAGAAGGAGGAATGATCGAGGAATGGA
AGGGGATGACGCGGTGGAAGAAAGGGTGGATAAAAGAGGTGAAGAGAGGA
GATGCGGCGAGTACGCTGGGTAGATCGAAGATGGAAGGGAGTAACGCTGG
TTTTTCGCGCTCTCATAGAGACACCCAAGCTTGTCTCACGCTCGATATCT
TTCCTTCCACCATCCCTCCCTCCCTCCATGCTTCCCTCCTATTCCACTTT
CCTTCCTCAGGCAATCCCGGCGGGTATGGAAATGGAGATGGCCTTGATGC
GAGAAGAGCGAGAAAGGGACAAAGAGCTCAAGGAAAAgtgagtgcagagt
cgatggtgaaggggggcattgcttgagcctgaacataaggctcagaacta
gctttggaagattgattggttgatcgatcggttcatcgattcttaagtga
aattgacattgaccttaaggacctcaaggctcatagtttatcagaatagc
tttgaaggagggtggggtgctcgtcgtctcgtgggtgatttctctcctcc
ttcccccctcccttcttccctcctttcctcacctccctcattctcactgc
tcgactgtctatgttccttttccaacacagGAATTATTCCTCCACTAGTG
GTAATCGGCGGGTGTGGGAAAACCATGAGATCGGTGTGGGgtaagtgcat
ggggccgggaaagacgagcgaaagagggagcgaaagagggagcgaaggag
ggagggagggagggaagataaatgacaattcagaaaagggggatggaagg
gaaaggtgtgactcaaaagaatgacctgtctcattccacgtatattaccc
ccccatcattcctctcctccctctcaagTTATCAGCACAAGACGGTGATG
CGACAGGCAGTAGCCCATCACGACAAGGTTGTAATAACGGATATGAGCAA
GGAGAAGAAGAAGAGGAAGAAGAAGAGTGCCGAAGAAAAAGAAGCAGAGA
AGGAGAAGGAGCGAGAGGCGgtacgtcctttctccccttttctcttagtt
atggggggggagggaggatgaggatctacctcttctcctccctccgccct
aggcctctttcggcttgattcacagcttttataacatgtccctgatttcc
ccttcattcctacttctgcttattcctcttcctttttcttccctccccct
ttacatcttatcgtgtaacgatagCAAGCGGCGGCGGAGACGGAGGCCCT
ACGCCAACTCCGAGCCCTTATATGGCGGCAATTGCGACAACGAGGGCGAT
TGGAGAAGAGGGAGGGAGGGAAGGAGAGGGAAGGAGACAGACGGAAGGAG
GATGAGGAAGAAATGAGATCGGCGTCTTCTCCATCGCGGTCAAAGGAGGA
GGAGGAGGAGAAGGAGGAGGAGGAGGTGGAGGAGGAGGGAAGAAAAATGG
ACGGAGGAAGGGACCAGTCACGTTCTAACTCCTCTTCGTTCTCGTCGTCT
TTTTCATCGTACTCATCGGGGGAAGACAGCAAAAGGAGAAAGTCGAAGGA
AAGGGAAGGTCCAGGGCTATAAAGCTAAAGAAAAAATAAGGACGTGCACA
CGAGA
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protein sequence of NO29G00150.2

>NO29G00150.2-protein ID=NO29G00150.2-protein|Name=NO29G00150.2|organism=Nannochloropsis oceanica|type=polypeptide|length=262bp
MRRVRWVDRRWKGVTLVFRALIETPKLVSRSISFLPPSLPPSMLPSYSTF
LPQAIPAGMEMEMALMREERERDKELKEKNYSSTSGNRRVWENHEIGVGY
QHKTVMRQAVAHHDKVVITDMSKEKKKRKKKSAEEKEAEKEKEREAQAAA
ETEALRQLRALIWRQLRQRGRLEKREGGKEREGDRRKEDEEEMRSASSPS
RSKEEEEEKEEEEVEEEGRKMDGGRDQSRSNSSSFSSSFSSYSSGEDSKR
RKSKEREGPGL*
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protein sequence of NO29G00150.1

>NO29G00150.1-protein ID=NO29G00150.1-protein|Name=NO29G00150.1|organism=Nannochloropsis oceanica|type=polypeptide|length=282bp
MSLSNLPVRLASSASLTLLLPLCQQLSPTMEDSGMPGTIEAFARASRHGR
FGGDEEEEEEVDDVVGSNFFRKQAIPAGMEMEMALMREERERDKELKEKN
YSSTSGNRRVWENHEIGVGYQHKTVMRQAVAHHDKVVITDMSKEKKKRKK
KSAEEKEAEKEKEREAQAAAETEALRQLRALIWRQLRQRGRLEKREGGKE
REGDRRKEDEEEMRSASSPSRSKEEEEEKEEEEVEEEGRKMDGGRDQSRS
NSSSFSSSFSSYSSGEDSKRRKSKEREGPGL*
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Synonyms
Publications