NO29G00150.1, NO29G00150.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO29G00150.1
Unique Name	NO29G00150.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1906
Alignment location	chr29:61565..64519 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr29	genome	chr29:61565..64519 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO29G00150.1 vs.
Match: EWM21229.1 (hypothetical protein Naga_100589g2 [Nannochloropsis gaditana])

HSP 1 Score: 132.5 bits (332), Expect = 2.100e-27
Identity = 108/205 (52.68%), Postives = 137/205 (66.83%), Query Frame = 0

Query:   73 QAIPAGMEMEMALMREERERDKELKEKNYSSTSGNRRVWENHEIGVGYQHKTVMRQAVAHHDKVVITDMSKEKKKRKKKSAEEKEAEKEKEREAQAAAETEALRQLRALIWRQLRQRGRLEKREGGKEREGDRRKED-EEEMRSASSPSRSKEEEEEKEEEEVEEEGRKMDGGRDQSRSNSSSFSSSFSSYSSGEDSKRRKSKER 277
            QAIPAG+E+EMALMREER+RDKELKE+N S    +RRVWENHEIGVGYQHK VMRQAV  H+KV I DM+KE  KRKKKSA E++AE +KE E +AAAE EA ++LRALIWR+LR R RL+      E E   R+   EE + S  S S          +  +EE+G+       Q++S+ S   SS SS    + SK++K K++
Sbjct:    9 QAIPAGLELEMALMREERQRDKELKERNTSIV--DRRVWENHEIGVGYQHKNVMRQAVVQHEKVRIKDMTKE--KRKKKSAAEQDAEAKKEEEVKAAAELEAFKRLRALIWRELRGRKRLD----ALEMEYSMREHGCEETLPSVRSSS----------DRFLEEDGQ-------QTKSHRSISPSSLSSARKDKRSKKKKKKQK 188

The following BLAST results are available for this feature:

BLAST of NO29G00150.1 vs.

BLAST of NO29G00150.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM21229.1	2.100e-27	52.68	hypothetical protein Naga_100589g2 [Nannochloropsi...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO29G00150	NO29G00150	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO29G00150.1	NO29G00150.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO29G00150.1.cds1	NO29G00150.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO29G00150.1.cds2	NO29G00150.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO29G00150.1.cds3	NO29G00150.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO29G00150.1.cds4	NO29G00150.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO29G00150.1.cds5	NO29G00150.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr29:61565..64519-
coding sequence from alignment at chr29:61565..64519-

mRNA sequence

>NO29G00150.1 ID=NO29G00150.1|Name=NO29G00150.1|organism=Nannochloropsis oceanica|type=mRNA|length=1906bp
AAGAAAGAAGCTGTGTTATCGTTAAACGTTATTTCATTTATCTTCGCTGT
GCTTTAGGACCAGCTACAAGGCATAAAGGTACTCATAAACTTCATGAGAC
AAGGTCAAGATGTACAATTTGAATGATCTGATAGATTATGCGAATGGTGC
TACTGGCTGATGCCGGCAGCTAAACCGTCATGCGGGGCGGGCTTATTCTG
GTGCTCAAAATATGATAGAGGGAGATGTCACCGTACCGGTGGCAAGGCTC
GTAATAGTAATTGAAACCCCAAAAAGGTAAAAAGAGCAAAAAACTTACAT
AACTTTCTGTATAGTCAGTCGTAAGGGTTGGACAGCCTTGACATTAGAAA
CTACACTTTGCCAGGGCTAACAGGGTTAGCGCTTTATCGCTTTCAATCGC
ATTCAAATAATGCGCACTTCCTATTCGCTTCTCCCAGAATATTTCAATTT
CGCTGCCTACCTCTGCCTTCATTCCACCAACCGTCATGTGAGGCCTGAGG
CGCAACTAAGTGTTGGACGATCAACTTTCCGGAGCGTATCGCAGGCAAGG
GCTGCTGTATCAGCGCTATGAATAAAAAACTTGGGCGTAGACACGAAAGA
ATAGTATTGGTTTCGGAATGGAACTGATCCATCCCCCAGCTACGATCCAT
CTTATCCAGGAGCTTAATAAGTCCATTCTCCGGGCTGGAGAGGTACAGAG
GGAACGGATGGAGGGATGCTTTGTGTGTAAAGGTCGCAGAGAGAAGAATC
AAAACTACAAGAGGGAAAAGTTGTGGCATTTATATTTACACCAATTTGTC
CCAATTAGACACTATTGCGTTCATCCCTCCAAAGTTGGCTCTTCTTCTAG
CCATTTTTACTTTTAAGGAGATGGGCCTGCGACAAGAGCTGGTCGCATTA
CAGACCACCACACTACCGCCTTGCATGCACTCAGCCTCGATGACACAAGC
TTACACACACTTTTCTATGGTTGATTGGTTGGTTGATTATTATGTAAACG
CGCACACACTAGCGCCTGTGTAAGGCAATGTCCCTGTCCAACCTCCCCGT
CCGACTTGCCTCCTCAGCCTCCCTCACTCTCCTCCTCCCCCTCTGTCAAC
AACTCAGCCCAACCATGGAGGACAGCGGCATGCCAGGCACCATCGAGGCT
TTTGCTCGGGCCTCCCGGCATGGGCGGTTCGGTGGGGACGAGGAAGAAGA
GGAGGAAGTCGACGACGTGGTTGGTAGCAATTTCTTCAGAAAGCAGGCAA
TCCCGGCGGGTATGGAAATGGAGATGGCCTTGATGCGAGAAGAGCGAGAA
AGGGACAAAGAGCTCAAGGAAAAGAATTATTCCTCCACTAGTGGTAATCG
GCGGGTGTGGGAAAACCATGAGATCGGTGTGGGTTATCAGCACAAGACGG
TGATGCGACAGGCAGTAGCCCATCACGACAAGGTTGTAATAACGGATATG
AGCAAGGAGAAGAAGAAGAGGAAGAAGAAGAGTGCCGAAGAAAAAGAAGC
AGAGAAGGAGAAGGAGCGAGAGGCGCAAGCGGCGGCGGAGACGGAGGCCC
TACGCCAACTCCGAGCCCTTATATGGCGGCAATTGCGACAACGAGGGCGA
TTGGAGAAGAGGGAGGGAGGGAAGGAGAGGGAAGGAGACAGACGGAAGGA
GGATGAGGAAGAAATGAGATCGGCGTCTTCTCCATCGCGGTCAAAGGAGG
AGGAGGAGGAGAAGGAGGAGGAGGAGGTGGAGGAGGAGGGAAGAAAAATG
GACGGAGGAAGGGACCAGTCACGTTCTAACTCCTCTTCGTTCTCGTCGTC
TTTTTCATCGTACTCATCGGGGGAAGACAGCAAAAGGAGAAAGTCGAAGG
AAAGGGAAGGTCCAGGGCTATAAAGCTAAAGAAAAAATAAGGACGTGCAC
ACGAGA

protein sequence of NO29G00150.1

>NO29G00150.1-protein ID=NO29G00150.1-protein|Name=NO29G00150.1|organism=Nannochloropsis oceanica|type=polypeptide|length=282bp
MSLSNLPVRLASSASLTLLLPLCQQLSPTMEDSGMPGTIEAFARASRHGR
FGGDEEEEEEVDDVVGSNFFRKQAIPAGMEMEMALMREERERDKELKEKN
YSSTSGNRRVWENHEIGVGYQHKTVMRQAVAHHDKVVITDMSKEKKKRKK
KSAEEKEAEKEKEREAQAAAETEALRQLRALIWRQLRQRGRLEKREGGKE
REGDRRKEDEEEMRSASSPSRSKEEEEEKEEEEVEEEGRKMDGGRDQSRS
NSSSFSSSFSSYSSGEDSKRRKSKEREGPGL*

mRNA from alignment at chr29:61565..64519-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO29G00150.1 ID=NO29G00150.1|Name=NO29G00150.1|organism=Nannochloropsis oceanica|type=mRNA|length=2955bp|location=Sequence derived from alignment at chr29:61565..64519- (Nannochloropsis oceanica)
AAGAAAGAAGCTGTGTTATCGTTAAACGTTATTTCATTTATCTTCGCTGT
GCTTTAGGACCAGCTACAAGGCATAAAGGTACTCATAAACTTCATGAGAC
AAGGTCAAGATGTACAATTTGAATGATCTGATAGATTATGCGAATGGTGC
TACTGGCTGATGCCGGCAGCTAAACCGTCATGCGGGGCGGGCTTATTCTG
GTGCTCAAAATATGATAGAGGGAGATGTCACCGTACCGGTGGCAAGGCTC
GTAATAGTAATTGAAACCCCAAAAAGGTAAAAAGAGCAAAAAACTTACAT
AACTTTCTGTATAGTCAGTCGTAAGGGTTGGACAGCCTTGACATTAGAAA
CTACACTTTGCCAGGGCTAACAGGGTTAGCGCTTTATCGCTTTCAATCGC
ATTCAAATAATGCGCACTTCCTATTCGCTTCTCCCAGAATATTTCAATTT
CGCTGCCTACCTCTGCCTTCATTCCACCAACCGTCATGTGAGGCCTGAGG
CGCAACTAAGTGTTGGACGATCAACTTTCCGGAGCGTATCGCAGGCAAGG
GCTGCTGTATCAGCGCTATGAATAAAAAACTTGGGCGTAGACACGAAAGA
ATAGTATTGGTTTCGGAATGGAACTGATCCATCCCCCAGCTACGATCCAT
CTTATCCAGGAGCTTAATAAGTCCATTCTCCGGGCTGGAGAGGTACAGAG
GGAACGGATGGAGGGATGCTTTGTGTGTAAAGGTCGCAGAGAGAAGAATC
AAAACTACAAGAGGGAAAAGTTGTGGCATTTATATTTACACCAATTTGTC
CCAATTAGACACTATTGCGTTCATCCCTCCAAAGTTGGCTCTTCTTCTAG
CCATTTTTACTTTTAAGGAGATGGGCCTGCGACAAGAGCTGGTCGCATTA
CAGACCACCACACTACCGCCTTGCATGCACTCAGCCTCGATGACACAAGC
TTACACACACTTTTCTATGGTTGATTGGTTGGTTGATTATTATGTAAACG
CGCACACACTAGCGCCTGTGTAAGGCAATGTCCCTGTCCAACCTCCCCGT
CCGACTTGCCTCCTCAGCCTCCCTCACTCTCCTCCTCCCCCTCTGTCAAC
AACTCAGCCCAACCATGGAGGACAGCGGCATGCCAGGCACCATCGAGGCT
TTTGCTCGGGCCTCCCGGCATGGGCGGTTCGGTGGGGACGAGGAAGAAGA
GGAGGAAGTCGACGACGTGGTTGGTAGCAATTTCTTCAGAAAGCAGGTGG
GTTGAGGGCAAGCATCATAGAAAGAGAGAAATGGAGGAGGGGCGGGATGG
ACTGGAAAGGATGGAGAGTCAAGAATATGCGAATAGGATGGGTGTGGAGG
AAGGATGCATGGTATTGGTCGGTCAGAAGGAGGAATGATCGAGGAATGGA
AGGGGATGACGCGGTGGAAGAAAGGGTGGATAAAAGAGGTGAAGAGAGGA
GATGCGGCGAGTACGCTGGGTAGATCGAAGATGGAAGGGAGTAACGCTGG
TTTTTCGCGCTCTCATAGAGACACCCAAGCTTGTCTCACGCTCGATATCT
TTCCTTCCACCATCCCTCCCTCCCTCCATGCTTCCCTCCTATTCCACTTT
CCTTCCTCAGGCAATCCCGGCGGGTATGGAAATGGAGATGGCCTTGATGC
GAGAAGAGCGAGAAAGGGACAAAGAGCTCAAGGAAAAGTGAGTGCAGAGT
CGATGGTGAAGGGGGGCATTGCTTGAGCCTGAACATAAGGCTCAGAACTA
GCTTTGGAAGATTGATTGGTTGATCGATCGGTTCATCGATTCTTAAGTGA
AATTGACATTGACCTTAAGGACCTCAAGGCTCATAGTTTATCAGAATAGC
TTTGAAGGAGGGTGGGGTGCTCGTCGTCTCGTGGGTGATTTCTCTCCTCC
TTCCCCCCTCCCTTCTTCCCTCCTTTCCTCACCTCCCTCATTCTCACTGC
TCGACTGTCTATGTTCCTTTTCCAACACAGGAATTATTCCTCCACTAGTG
GTAATCGGCGGGTGTGGGAAAACCATGAGATCGGTGTGGGGTAAGTGCAT
GGGGCCGGGAAAGACGAGCGAAAGAGGGAGCGAAAGAGGGAGCGAAGGAG
GGAGGGAGGGAGGGAAGATAAATGACAATTCAGAAAAGGGGGATGGAAGG
GAAAGGTGTGACTCAAAAGAATGACCTGTCTCATTCCACGTATATTACCC
CCCCATCATTCCTCTCCTCCCTCTCAAGTTATCAGCACAAGACGGTGATG
CGACAGGCAGTAGCCCATCACGACAAGGTTGTAATAACGGATATGAGCAA
GGAGAAGAAGAAGAGGAAGAAGAAGAGTGCCGAAGAAAAAGAAGCAGAGA
AGGAGAAGGAGCGAGAGGCGGTACGTCCTTTCTCCCCTTTTCTCTTAGTT
ATGGGGGGGGAGGGAGGATGAGGATCTACCTCTTCTCCTCCCTCCGCCCT
AGGCCTCTTTCGGCTTGATTCACAGCTTTTATAACATGTCCCTGATTTCC
CCTTCATTCCTACTTCTGCTTATTCCTCTTCCTTTTTCTTCCCTCCCCCT
TTACATCTTATCGTGTAACGATAGCAAGCGGCGGCGGAGACGGAGGCCCT
ACGCCAACTCCGAGCCCTTATATGGCGGCAATTGCGACAACGAGGGCGAT
TGGAGAAGAGGGAGGGAGGGAAGGAGAGGGAAGGAGACAGACGGAAGGAG
GATGAGGAAGAAATGAGATCGGCGTCTTCTCCATCGCGGTCAAAGGAGGA
GGAGGAGGAGAAGGAGGAGGAGGAGGTGGAGGAGGAGGGAAGAAAAATGG
ACGGAGGAAGGGACCAGTCACGTTCTAACTCCTCTTCGTTCTCGTCGTCT
TTTTCATCGTACTCATCGGGGGAAGACAGCAAAAGGAGAAAGTCGAAGGA
AAGGGAAGGTCCAGGGCTATAAAGCTAAAGAAAAAATAAGGACGTGCACA
CGAGA

Coding sequence (CDS) from alignment at chr29:61565..64519-

>NO29G00150.1 ID=NO29G00150.1|Name=NO29G00150.1|organism=Nannochloropsis oceanica|type=CDS|length=846bp|location=Sequence derived from alignment at chr29:61565..64519- (Nannochloropsis oceanica)
ATGTCCCTGTCCAACCTCCCCGTCCGACTTGCCTCCTCAGCCTCCCTCAC
TCTCCTCCTCCCCCTCTGTCAACAACTCAGCCCAACCATGGAGGACAGCG
GCATGCCAGGCACCATCGAGGCTTTTGCTCGGGCCTCCCGGCATGGGCGG
TTCGGTGGGGACGAGGAAGAAGAGGAGGAAGTCGACGACGTGGTTGGTAG
CAATTTCTTCAGAAAGCAGGCAATCCCGGCGGGTATGGAAATGGAGATGG
CCTTGATGCGAGAAGAGCGAGAAAGGGACAAAGAGCTCAAGGAAAAGAAT
TATTCCTCCACTAGTGGTAATCGGCGGGTGTGGGAAAACCATGAGATCGG
TGTGGGTTATCAGCACAAGACGGTGATGCGACAGGCAGTAGCCCATCACG
ACAAGGTTGTAATAACGGATATGAGCAAGGAGAAGAAGAAGAGGAAGAAG
AAGAGTGCCGAAGAAAAAGAAGCAGAGAAGGAGAAGGAGCGAGAGGCGCA
AGCGGCGGCGGAGACGGAGGCCCTACGCCAACTCCGAGCCCTTATATGGC
GGCAATTGCGACAACGAGGGCGATTGGAGAAGAGGGAGGGAGGGAAGGAG
AGGGAAGGAGACAGACGGAAGGAGGATGAGGAAGAAATGAGATCGGCGTC
TTCTCCATCGCGGTCAAAGGAGGAGGAGGAGGAGAAGGAGGAGGAGGAGG
TGGAGGAGGAGGGAAGAAAAATGGACGGAGGAAGGGACCAGTCACGTTCT
AACTCCTCTTCGTTCTCGTCGTCTTTTTCATCGTACTCATCGGGGGAAGA
CAGCAAAAGGAGAAAGTCGAAGGAAAGGGAAGGTCCAGGGCTATAA

Synonyms

Publications