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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr29 | genome | chr29:61565..64519 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO29G00150.2 vs.
Match: EWM21229.1 (hypothetical protein Naga_100589g2 [Nannochloropsis gaditana]) HSP 1 Score: 132.1 bits (331), Expect = 2.500e-27 Identity = 108/205 (52.68%), Postives = 137/205 (66.83%), Query Frame = 0
Query: 53 QAIPAGMEMEMALMREERERDKELKEKNYSSTSGNRRVWENHEIGVGYQHKTVMRQAVAHHDKVVITDMSKEKKKRKKKSAEEKEAEKEKEREAQAAAETEALRQLRALIWRQLRQRGRLEKREGGKEREGDRRKED-EEEMRSASSPSRSKEEEEEKEEEEVEEEGRKMDGGRDQSRSNSSSFSSSFSSYSSGEDSKRRKSKER 257
QAIPAG+E+EMALMREER+RDKELKE+N S +RRVWENHEIGVGYQHK VMRQAV H+KV I DM+KE KRKKKSA E++AE +KE E +AAAE EA ++LRALIWR+LR R RL+ E E R+ EE + S S S + +EE+G+ Q++S+ S SS SS + SK++K K++
Sbjct: 9 QAIPAGLELEMALMREERQRDKELKERNTSIV--DRRVWENHEIGVGYQHKNVMRQAVVQHEKVRIKDMTKE--KRKKKSAAEQDAEAKKEEEVKAAAELEAFKRLRALIWRELRGRKRLD----ALEMEYSMREHGCEETLPSVRSSS----------DRFLEEDGQ-------QTKSHRSISPSSLSSARKDKRSKKKKKKQK 188
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO29G00150.2 ID=NO29G00150.2|Name=NO29G00150.2|organism=Nannochloropsis oceanica|type=mRNA|length=2270bp
AAGAAAGAAGCTGTGTTATCGTTAAACGTTATTTCATTTATCTTCGCTGT
GCTTTAGGACCAGCTACAAGGCATAAAGGTACTCATAAACTTCATGAGAC
AAGGTCAAGATGTACAATTTGAATGATCTGATAGATTATGCGAATGGTGC
TACTGGCTGATGCCGGCAGCTAAACCGTCATGCGGGGCGGGCTTATTCTG
GTGCTCAAAATATGATAGAGGGAGATGTCACCGTACCGGTGGCAAGGCTC
GTAATAGTAATTGAAACCCCAAAAAGGTAAAAAGAGCAAAAAACTTACAT
AACTTTCTGTATAGTCAGTCGTAAGGGTTGGACAGCCTTGACATTAGAAA
CTACACTTTGCCAGGGCTAACAGGGTTAGCGCTTTATCGCTTTCAATCGC
ATTCAAATAATGCGCACTTCCTATTCGCTTCTCCCAGAATATTTCAATTT
CGCTGCCTACCTCTGCCTTCATTCCACCAACCGTCATGTGAGGCCTGAGG
CGCAACTAAGTGTTGGACGATCAACTTTCCGGAGCGTATCGCAGGCAAGG
GCTGCTGTATCAGCGCTATGAATAAAAAACTTGGGCGTAGACACGAAAGA
ATAGTATTGGTTTCGGAATGGAACTGATCCATCCCCCAGCTACGATCCAT
CTTATCCAGGAGCTTAATAAGTCCATTCTCCGGGCTGGAGAGGTACAGAG
GGAACGGATGGAGGGATGCTTTGTGTGTAAAGGTCGCAGAGAGAAGAATC
AAAACTACAAGAGGGAAAAGTTGTGGCATTTATATTTACACCAATTTGTC
CCAATTAGACACTATTGCGTTCATCCCTCCAAAGTTGGCTCTTCTTCTAG
CCATTTTTACTTTTAAGGAGATGGGCCTGCGACAAGAGCTGGTCGCATTA
CAGACCACCACACTACCGCCTTGCATGCACTCAGCCTCGATGACACAAGC
TTACACACACTTTTCTATGGTTGATTGGTTGGTTGATTATTATGTAAACG
CGCACACACTAGCGCCTGTGTAAGGCAATGTCCCTGTCCAACCTCCCCGT
CCGACTTGCCTCCTCAGCCTCCCTCACTCTCCTCCTCCCCCTCTGTCAAC
AACTCAGCCCAACCATGGAGGACAGCGGCATGCCAGGCACCATCGAGGCT
TTTGCTCGGGCCTCCCGGCATGGGCGGTTCGGTGGGGACGAGGAAGAAGA
GGAGGAAGTCGACGACGTGGTTGGTAGCAATTTCTTCAGAAAGCAGGTGG
GTTGAGGGCAAGCATCATAGAAAGAGAGAAATGGAGGAGGGGCGGGATGG
ACTGGAAAGGATGGAGAGTCAAGAATATGCGAATAGGATGGGTGTGGAGG
AAGGATGCATGGTATTGGTCGGTCAGAAGGAGGAATGATCGAGGAATGGA
AGGGGATGACGCGGTGGAAGAAAGGGTGGATAAAAGAGGTGAAGAGAGGA
GATGCGGCGAGTACGCTGGGTAGATCGAAGATGGAAGGGAGTAACGCTGG
TTTTTCGCGCTCTCATAGAGACACCCAAGCTTGTCTCACGCTCGATATCT
TTCCTTCCACCATCCCTCCCTCCCTCCATGCTTCCCTCCTATTCCACTTT
CCTTCCTCAGGCAATCCCGGCGGGTATGGAAATGGAGATGGCCTTGATGC
GAGAAGAGCGAGAAAGGGACAAAGAGCTCAAGGAAAAGAATTATTCCTCC
ACTAGTGGTAATCGGCGGGTGTGGGAAAACCATGAGATCGGTGTGGGTTA
TCAGCACAAGACGGTGATGCGACAGGCAGTAGCCCATCACGACAAGGTTG
TAATAACGGATATGAGCAAGGAGAAGAAGAAGAGGAAGAAGAAGAGTGCC
GAAGAAAAAGAAGCAGAGAAGGAGAAGGAGCGAGAGGCGCAAGCGGCGGC
GGAGACGGAGGCCCTACGCCAACTCCGAGCCCTTATATGGCGGCAATTGC
GACAACGAGGGCGATTGGAGAAGAGGGAGGGAGGGAAGGAGAGGGAAGGA
GACAGACGGAAGGAGGATGAGGAAGAAATGAGATCGGCGTCTTCTCCATC
GCGGTCAAAGGAGGAGGAGGAGGAGAAGGAGGAGGAGGAGGTGGAGGAGG
AGGGAAGAAAAATGGACGGAGGAAGGGACCAGTCACGTTCTAACTCCTCT
TCGTTCTCGTCGTCTTTTTCATCGTACTCATCGGGGGAAGACAGCAAAAG
GAGAAAGTCGAAGGAAAGGGAAGGTCCAGGGCTATAAAGCTAAAGAAAAA
ATAAGGACGTGCACACGAGA back to topprotein sequence of NO29G00150.2 >NO29G00150.2-protein ID=NO29G00150.2-protein|Name=NO29G00150.2|organism=Nannochloropsis oceanica|type=polypeptide|length=262bp
MRRVRWVDRRWKGVTLVFRALIETPKLVSRSISFLPPSLPPSMLPSYSTF
LPQAIPAGMEMEMALMREERERDKELKEKNYSSTSGNRRVWENHEIGVGY
QHKTVMRQAVAHHDKVVITDMSKEKKKRKKKSAEEKEAEKEKEREAQAAA
ETEALRQLRALIWRQLRQRGRLEKREGGKEREGDRRKEDEEEMRSASSPS
RSKEEEEEKEEEEVEEEGRKMDGGRDQSRSNSSSFSSSFSSYSSGEDSKR
RKSKEREGPGL* back to topmRNA from alignment at chr29:61565..64519- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO29G00150.2 ID=NO29G00150.2|Name=NO29G00150.2|organism=Nannochloropsis oceanica|type=mRNA|length=2955bp|location=Sequence derived from alignment at chr29:61565..64519- (Nannochloropsis oceanica)
AAGAAAGAAGCTGTGTTATCGTTAAACGTTATTTCATTTATCTTCGCTGT
GCTTTAGGACCAGCTACAAGGCATAAAGGTACTCATAAACTTCATGAGAC
AAGGTCAAGATGTACAATTTGAATGATCTGATAGATTATGCGAATGGTGC
TACTGGCTGATGCCGGCAGCTAAACCGTCATGCGGGGCGGGCTTATTCTG
GTGCTCAAAATATGATAGAGGGAGATGTCACCGTACCGGTGGCAAGGCTC
GTAATAGTAATTGAAACCCCAAAAAGGTAAAAAGAGCAAAAAACTTACAT
AACTTTCTGTATAGTCAGTCGTAAGGGTTGGACAGCCTTGACATTAGAAA
CTACACTTTGCCAGGGCTAACAGGGTTAGCGCTTTATCGCTTTCAATCGC
ATTCAAATAATGCGCACTTCCTATTCGCTTCTCCCAGAATATTTCAATTT
CGCTGCCTACCTCTGCCTTCATTCCACCAACCGTCATGTGAGGCCTGAGG
CGCAACTAAGTGTTGGACGATCAACTTTCCGGAGCGTATCGCAGGCAAGG
GCTGCTGTATCAGCGCTATGAATAAAAAACTTGGGCGTAGACACGAAAGA
ATAGTATTGGTTTCGGAATGGAACTGATCCATCCCCCAGCTACGATCCAT
CTTATCCAGGAGCTTAATAAGTCCATTCTCCGGGCTGGAGAGGTACAGAG
GGAACGGATGGAGGGATGCTTTGTGTGTAAAGGTCGCAGAGAGAAGAATC
AAAACTACAAGAGGGAAAAGTTGTGGCATTTATATTTACACCAATTTGTC
CCAATTAGACACTATTGCGTTCATCCCTCCAAAGTTGGCTCTTCTTCTAG
CCATTTTTACTTTTAAGGAGATGGGCCTGCGACAAGAGCTGGTCGCATTA
CAGACCACCACACTACCGCCTTGCATGCACTCAGCCTCGATGACACAAGC
TTACACACACTTTTCTATGGTTGATTGGTTGGTTGATTATTATGTAAACG
CGCACACACTAGCGCCTGTGTAAGGCAATGTCCCTGTCCAACCTCCCCGT
CCGACTTGCCTCCTCAGCCTCCCTCACTCTCCTCCTCCCCCTCTGTCAAC
AACTCAGCCCAACCATGGAGGACAGCGGCATGCCAGGCACCATCGAGGCT
TTTGCTCGGGCCTCCCGGCATGGGCGGTTCGGTGGGGACGAGGAAGAAGA
GGAGGAAGTCGACGACGTGGTTGGTAGCAATTTCTTCAGAAAGCAGGTGG
GTTGAGGGCAAGCATCATAGAAAGAGAGAAATGGAGGAGGGGCGGGATGG
ACTGGAAAGGATGGAGAGTCAAGAATATGCGAATAGGATGGGTGTGGAGG
AAGGATGCATGGTATTGGTCGGTCAGAAGGAGGAATGATCGAGGAATGGA
AGGGGATGACGCGGTGGAAGAAAGGGTGGATAAAAGAGGTGAAGAGAGGA
GATGCGGCGAGTACGCTGGGTAGATCGAAGATGGAAGGGAGTAACGCTGG
TTTTTCGCGCTCTCATAGAGACACCCAAGCTTGTCTCACGCTCGATATCT
TTCCTTCCACCATCCCTCCCTCCCTCCATGCTTCCCTCCTATTCCACTTT
CCTTCCTCAGGCAATCCCGGCGGGTATGGAAATGGAGATGGCCTTGATGC
GAGAAGAGCGAGAAAGGGACAAAGAGCTCAAGGAAAAGTGAGTGCAGAGT
CGATGGTGAAGGGGGGCATTGCTTGAGCCTGAACATAAGGCTCAGAACTA
GCTTTGGAAGATTGATTGGTTGATCGATCGGTTCATCGATTCTTAAGTGA
AATTGACATTGACCTTAAGGACCTCAAGGCTCATAGTTTATCAGAATAGC
TTTGAAGGAGGGTGGGGTGCTCGTCGTCTCGTGGGTGATTTCTCTCCTCC
TTCCCCCCTCCCTTCTTCCCTCCTTTCCTCACCTCCCTCATTCTCACTGC
TCGACTGTCTATGTTCCTTTTCCAACACAGGAATTATTCCTCCACTAGTG
GTAATCGGCGGGTGTGGGAAAACCATGAGATCGGTGTGGGGTAAGTGCAT
GGGGCCGGGAAAGACGAGCGAAAGAGGGAGCGAAAGAGGGAGCGAAGGAG
GGAGGGAGGGAGGGAAGATAAATGACAATTCAGAAAAGGGGGATGGAAGG
GAAAGGTGTGACTCAAAAGAATGACCTGTCTCATTCCACGTATATTACCC
CCCCATCATTCCTCTCCTCCCTCTCAAGTTATCAGCACAAGACGGTGATG
CGACAGGCAGTAGCCCATCACGACAAGGTTGTAATAACGGATATGAGCAA
GGAGAAGAAGAAGAGGAAGAAGAAGAGTGCCGAAGAAAAAGAAGCAGAGA
AGGAGAAGGAGCGAGAGGCGGTACGTCCTTTCTCCCCTTTTCTCTTAGTT
ATGGGGGGGGAGGGAGGATGAGGATCTACCTCTTCTCCTCCCTCCGCCCT
AGGCCTCTTTCGGCTTGATTCACAGCTTTTATAACATGTCCCTGATTTCC
CCTTCATTCCTACTTCTGCTTATTCCTCTTCCTTTTTCTTCCCTCCCCCT
TTACATCTTATCGTGTAACGATAGCAAGCGGCGGCGGAGACGGAGGCCCT
ACGCCAACTCCGAGCCCTTATATGGCGGCAATTGCGACAACGAGGGCGAT
TGGAGAAGAGGGAGGGAGGGAAGGAGAGGGAAGGAGACAGACGGAAGGAG
GATGAGGAAGAAATGAGATCGGCGTCTTCTCCATCGCGGTCAAAGGAGGA
GGAGGAGGAGAAGGAGGAGGAGGAGGTGGAGGAGGAGGGAAGAAAAATGG
ACGGAGGAAGGGACCAGTCACGTTCTAACTCCTCTTCGTTCTCGTCGTCT
TTTTCATCGTACTCATCGGGGGAAGACAGCAAAAGGAGAAAGTCGAAGGA
AAGGGAAGGTCCAGGGCTATAAAGCTAAAGAAAAAATAAGGACGTGCACA
CGAGA back to topCoding sequence (CDS) from alignment at chr29:61565..64519- >NO29G00150.2 ID=NO29G00150.2|Name=NO29G00150.2|organism=Nannochloropsis oceanica|type=CDS|length=786bp|location=Sequence derived from alignment at chr29:61565..64519- (Nannochloropsis oceanica)
ATGCGGCGAGTACGCTGGGTAGATCGAAGATGGAAGGGAGTAACGCTGGT
TTTTCGCGCTCTCATAGAGACACCCAAGCTTGTCTCACGCTCGATATCTT
TCCTTCCACCATCCCTCCCTCCCTCCATGCTTCCCTCCTATTCCACTTTC
CTTCCTCAGGCAATCCCGGCGGGTATGGAAATGGAGATGGCCTTGATGCG
AGAAGAGCGAGAAAGGGACAAAGAGCTCAAGGAAAAGAATTATTCCTCCA
CTAGTGGTAATCGGCGGGTGTGGGAAAACCATGAGATCGGTGTGGGTTAT
CAGCACAAGACGGTGATGCGACAGGCAGTAGCCCATCACGACAAGGTTGT
AATAACGGATATGAGCAAGGAGAAGAAGAAGAGGAAGAAGAAGAGTGCCG
AAGAAAAAGAAGCAGAGAAGGAGAAGGAGCGAGAGGCGCAAGCGGCGGCG
GAGACGGAGGCCCTACGCCAACTCCGAGCCCTTATATGGCGGCAATTGCG
ACAACGAGGGCGATTGGAGAAGAGGGAGGGAGGGAAGGAGAGGGAAGGAG
ACAGACGGAAGGAGGATGAGGAAGAAATGAGATCGGCGTCTTCTCCATCG
CGGTCAAAGGAGGAGGAGGAGGAGAAGGAGGAGGAGGAGGTGGAGGAGGA
GGGAAGAAAAATGGACGGAGGAAGGGACCAGTCACGTTCTAACTCCTCTT
CGTTCTCGTCGTCTTTTTCATCGTACTCATCGGGGGAAGACAGCAAAAGG
AGAAAGTCGAAGGAAAGGGAAGGTCCAGGGCTATAA back to top
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